HHsearch results for GI: 254780386 and protein with PDBid: 3fpp_A
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=99.92 E-value=2.7e-24 Score=178.97 Aligned_cols=259 Identities=15% Similarity=0.236 Sum_probs=164.2
Q ss_pred EEEEEEEEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 06712589997999953873898468886899998578989336978999964899888999874343323321001233
Q gi|254780386|r 37 LLPIEISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSA 116 (440)
Q Consensus 37 ~~~~~~~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~ 116 (440)
-..+..++.++|+|.|.... .|.++.+|+|.+++|++||.|++||+|++||+.+....+.+.+..+..++++++..+..
T Consensus 13 ~g~i~~tv~~~G~v~~~~~~-~v~a~~~G~V~~v~v~~G~~V~~G~~L~~id~~~~~~~~~~~~a~~~~~~~~l~~a~~~ 91 (341)
T 3fpp_A 13 PGDLQQSVLATGKLDALRKV-DVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAE 91 (341)
T ss_dssp CCCCCCEEEEEEEEEESSEE-ECCCSSCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEEEEEEEEE-EEECCCCEEEEEEECCCCCEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98724999999999980899-99844778999999899199889998999881999999999999898876548999878
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 33222114555422356888877655467886543336554200112221122100223210112232222221023333
Q gi|254780386|r 117 LDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQ 196 (440)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 196 (440)
++. .+
T Consensus 92 l~~---------------------------------------------------------------------------a~ 96 (341)
T 3fpp_A 92 LKL---------------------------------------------------------------------------AR 96 (341)
T ss_dssp HHH---------------------------------------------------------------------------HT
T ss_pred HHH---------------------------------------------------------------------------HH
T ss_conf 887---------------------------------------------------------------------------44
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22210122222211100001110024666531012233222222222221000122333211233222122222222122
Q gi|254780386|r 197 KDLTMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADE 276 (440)
Q Consensus 197 ~el~~~~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~ 276 (440)
.++...+.+...+..++.++.............+.. ....+...
T Consensus 97 ~~~~r~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~l~~~ 140 (341)
T 3fpp_A 97 VTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGT------------------------------------IDAQIKRN 140 (341)
T ss_dssp HHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHH------------------------------------HHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHH------------------------------------HHHHHHHH
T ss_conf 332012344203765266665554321023567888------------------------------------77799876
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCC---CCCCCCCCCCCCCEEEEEEECHHHHHHCCCCCCEEEEEE
Q ss_conf 23322122222123455541168731212012221244---455421033556504775326223110158983179998
Q gi|254780386|r 277 MSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQ---SQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFP 353 (440)
Q Consensus 277 ~~~l~~l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~---G~~l~~Ivp~~~~l~v~~~v~~~di~~i~~Gq~v~i~~~ 353 (440)
..........+.+..+.||++|.+..... ..|..+.+ +.++++|. +.+.+++.+.+++.++.++++|+.|.++++
T Consensus 141 ~~~~~~~~~~~~~~~i~a~~~~~~~~~~~-~~G~~v~~~~~~~~~~~i~-~~~~~~~~~~v~e~~~~~v~~g~~v~i~~~ 218 (341)
T 3fpp_A 141 QASLDTAKTNLDYTRIVAPMAGEVTQITT-LQGQTVIAAQQAPNILTLA-DMSAMLVKAQVSEADVIHLKPGQKAWFTVL 218 (341)
T ss_dssp HHHHTTTTTTTTSSEEECSSSEEEEEESS-CTTCEECCTTSCCCCEEEE-CCSEEEEEEECCGGGSTTCCTTCCCEECCS
T ss_pred HHHHHHHHHCCCCEEEECCCCCEEEEEEE-CCCCEEECCCCCCEEEEEE-CCCCEEEEEEECHHHHHHHHCCCEEEEEEE
T ss_conf 66555555113550684686762778982-5798883378761478992-388537998658999997314753789870
Q ss_pred ECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEECEEE
Q ss_conf 12887544399999997133444677765511899999935011256785152377569999922054
Q gi|254780386|r 354 HYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAKNTT 421 (440)
Q Consensus 354 a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~~~~ 421 (440)
.++.. .+.|+|..|+|.+..... ...|.+.+.++. .+..++|||++++.|.++.+.
T Consensus 219 ~~~~~---~~~g~v~~i~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~G~~v~v~i~~~~~~ 274 (341)
T 3fpp_A 219 GDQLT---RYEGQIKDVLPTPEKVND----AIFYYARFEVPN-----PNGLLRLDMTAQVHIQLTDVK 274 (341)
T ss_dssp SSSSS---CBCCCEEEECSSCCBSSS----CBCCEEEEEEEC-----SSSCCCTTCEEEEEEESCCCC
T ss_pred CCCEE---EEEEEEEEEECCEEECCC----EEEEEEEEEECC-----CCCCCCCCEEEEEEEEECCCC
T ss_conf 22101---211599999632230576----199999997259-----765555533899999935758