HHSEARCH alignment of GI: 254780386 and SCOP domain: d1vf7a_

Alignment
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.86  E-value=2.4e-22  Score=164.47  Aligned_cols=221  Identities=13%  Similarity=0.171  Sum_probs=143.2

Q ss_pred             EEEEEEEEEECCCEEEEECCCCCEEEEEECCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             89997999953873898468886899998578989336978999964899888999874343323321001233332221
Q gi|254780386|r   43 SVSSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFLNN  122 (440)
Q Consensus        43 ~v~~~G~i~~~~~~~~I~s~~~G~V~~i~VkeGd~VkkGq~L~~ld~~~~~~~l~~~~~~l~~l~~~l~~~~~~l~~~~~  122 (440)
                      ++..+|.|.|.. ...|.|+++|+|.+++|++||.|+|||+|++||+.+....+...+.++..++++++..+        
T Consensus         3 ~~~~~G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~--------   73 (237)
T d1vf7a_           3 NTELPGRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYK--------   73 (237)
T ss_dssp             EEEEEEECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             EEEEEEEEEEEE-EEEEEEECCEEEEEEECCCCCEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf             799889999637-99998216789999987994998899999998238877665333233333222123454--------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             14555422356888877655467886543336554200112221122100223210112232222221023333222101
Q gi|254780386|r  123 KYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGISSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMM  202 (440)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~el~~~  202 (440)
                                                                                                      
T Consensus        74 --------------------------------------------------------------------------------   73 (237)
T d1vf7a_          74 --------------------------------------------------------------------------------   73 (237)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222211100001110024666531012233222222222221000122333211233222122222222122233221
Q gi|254780386|r  203 KNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTI  282 (440)
Q Consensus       203 ~~l~~~~~~~~~~l~~~~~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~e~~~~l~~~~~~l~~  282 (440)
                       .+.......+.++.                                                  ..+..+.....++..
T Consensus        74 -~l~~~~~~~~~~~~--------------------------------------------------~~~~~~~~a~~~l~~  102 (237)
T d1vf7a_          74 -LLVADQAVSKQQYA--------------------------------------------------DANAAYLQSKAAVEQ  102 (237)
T ss_dssp             -HHHHTTSSCHHHHH--------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred             -HHHHCCCCCCCHHH--------------------------------------------------HHHHHCCHHHHHHHH
T ss_conf             -44430543220012--------------------------------------------------222200126889999


Q ss_pred             CCCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCC-CCCCCEEEEEEECHHHHHHCC-------------CCCCE
Q ss_conf             2222212345554116873121201222124445542103-355650477532622311015-------------89831
Q gi|254780386|r  283 LEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIV-PHSKLTYIRAKVTPKQIQHVK-------------KGYTA  348 (440)
Q Consensus       283 l~~~l~~~~I~AP~~G~V~~l~~~~~G~~v~~G~~l~~Iv-p~~~~l~v~~~v~~~di~~i~-------------~Gq~v  348 (440)
                      ++..+.++.|+||++|+|..... ..|.++.+|.....+. .+...+++.+..++.++..+.             .|..+
T Consensus       103 a~~~l~~~~i~ap~~G~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~v  181 (237)
T d1vf7a_         103 ARINLRYTKVLSPISGRIGRSAV-TEGALVTNGQANAMATVQQLDPIYVDVTQPSTALLRLRRELASGQLERAGDNAAKV  181 (237)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSS-CBTCEECTTCSSCSEEEECCSEEECCEEEEHHHHHHHHHHHHHTSSCEEETTEEEC
T ss_pred             HHHHHCCCCCCCCHHCEEEEEEE-CCCCEECCCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf             75322024210420001125772-04848737863245899338510244150388777776542134200025677347


Q ss_pred             EEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECHHHCCCCCCEECCCCEEEEEEEEC
Q ss_conf             7999812887544399999997133444677765511899999935011256785152377569999922
Q gi|254780386|r  349 TVRFPHYADIREKKFKAIIEKIDPIISQQDNNLQTQEYYEVILKITDLAFSDNNIELRNGFPAEVLFTAK  418 (440)
Q Consensus       349 ~i~~~a~~~~~~~~~~G~V~~Is~~~~~~~~~~~~~~~y~v~i~~~~~~~~~~~~~L~~Gm~~~~~I~~~  418 (440)
                      .+.++..+   ...+.|+|..|++.....+      ..|.|++.+++     ++..|+|||.++|.|.+|
T Consensus       182 ~~~~~~~~---~~~~~g~v~~i~~~vd~~t------~t~~v~~~i~n-----~~~~L~pGm~v~v~i~~g  237 (237)
T d1vf7a_         182 SLKLEDGS---QYPLEGRLEFSEVSVDEGT------GSVTIRAVFPN-----PNNELLPGMFVHAQLQEG  237 (237)
T ss_dssp             CEECTTSC---EESSCCEEESSCSCCCSSS------SEEEECBEEEC-----SSSCCCTTCEEEEEEECC
T ss_pred             EEEECCCC---CCEEEEEEEEEECCCCCCC------CEEEEEEEEEC-----CCCCCCCCCEEEEEEECC
T ss_conf             88603788---7138899999846384888------48999999989-----999688999899999459


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]