RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780386|ref|YP_003064799.1| Type I secretion membrane
fusion protein, HlyD [Candidatus Liberibacter asiaticus str. psy62]
(440 letters)
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha;
biotin-requiring enzyme, biotin, actyl COA carboxylase,
fatty acid synthesis, structural genomics; NMR {Homo
sapiens} (A:)
Length = 99
Score = 43.7 bits (103), Expect = 5e-05
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTD 94
++ IKSP G +KK G+Q + TPL+ FE+ E+
Sbjct: 43 MVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEESDK 89
Score = 38.7 bits (90), Expect = 0.002
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 45 SSSGEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
S S + +++ +P +G I+K V+ G ++ G L+
Sbjct: 3 SGSSGVSSQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI 46
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} (A:)
Length = 81
Score = 42.8 bits (101), Expect = 1e-04
Identities = 7/42 (16%), Positives = 23/42 (54%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+ + +++ + +G++K+ +V+ G +I +G ++ E
Sbjct: 36 ITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77
>1k8m_A E2 component of branched-chain ahpha-ketoacid
dehydrogenase; lipoyl acid bearing, human BCKD,
experimental DATA, average structure, transferase; NMR
{Homo sapiens} (A:)
Length = 93
Score = 42.1 bits (99), Expect = 1e-04
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTD 94
E+ ++ V I S + G+IKK G PL+ E D
Sbjct: 40 EVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALKD 85
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; misfolded dimer,
acyltransferase, glycolysis; NMR {Escherichia coli}
(A:)
Length = 85
Score = 42.0 bits (99), Expect = 1e-04
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTD 94
+ + +E+ +PF+G++K+ +V G ++ G+ ++ FE
Sbjct: 31 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAP 77
Score = 32.8 bits (75), Expect = 0.086
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 57 VEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
E+ P + + V+ G ++ L+T E
Sbjct: 3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVE 34
>2qf7_A Pyruvate carboxylase protein; multi-domain,
multi-functional, biotin-dependent, ligase; HET: KCX
COA SAP; 2.00A {Rhizobium etli cfn 42} (A:1087-1165)
Length = 79
Score = 41.6 bits (98), Expect = 2e-04
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
I I + G I + V+ G QI L +
Sbjct: 38 VSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 78
Score = 35.9 bits (83), Expect = 0.011
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 53 EDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
N + +P G+I + V +G + G L++ E
Sbjct: 6 PGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 41
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component
of 2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
(A:)
Length = 79
Score = 42.0 bits (99), Expect = 2e-04
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+I + V+E+ + G+I + G +L G L +
Sbjct: 36 VDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of
pyruvate dehydrogenase complex; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
(A:)
Length = 79
Score = 41.6 bits (98), Expect = 2e-04
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+ + +E+ SP +G++K V+ G ++ +G ++ E
Sbjct: 33 VVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74
>1z6h_A Biotin/lipoyl attachment protein; solution structure,
biosynthetic protein; HET: BTI; NMR {Bacillus subtilis}
PDB: 1z7t_A 2b8f_A 2b8g_A* (A:)
Length = 72
Score = 41.6 bits (98), Expect = 2e-04
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+ + + I + SGI+K+ + + G + +G LL +
Sbjct: 28 AILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial;
ligase, biotin, ATP-binding, polymorphism, disease
mutation, nucleotide-binding; HET: PG4; 1.5A {Homo
sapiens} (A:)
Length = 94
Score = 41.4 bits (97), Expect = 2e-04
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
I + + +G +K + G + +G L+ E
Sbjct: 54 CVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP;
2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A*
3ho8_A* 3hb9_A* (A:1069-1150)
Length = 82
Score = 41.3 bits (97), Expect = 2e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
I++PF G+IK+ V NG I G L+ E
Sbjct: 46 ETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 79
Score = 35.9 bits (83), Expect = 0.012
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 53 EDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
+ N I + G + + +V G + PLL E
Sbjct: 6 KSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITE 41
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel,
ATP-binding, biotin, disease mutation, gluconeogenesis,
ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A
{Homo sapiens} PDB: 3bg9_A (A:644-718)
Length = 75
Score = 40.9 bits (96), Expect = 3e-04
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
+ + SP G ++K V + +L E
Sbjct: 36 VLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 75
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate
dehydrogenase, lipoyl domain, complex, glycolysis; NMR
{Escherichia coli} (A:)
Length = 80
Score = 40.8 bits (96), Expect = 3e-04
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
V+E+ + GI+ + G+ + L +
Sbjct: 45 VLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase,
fatty acid biosynthesis, hammerhead structure,
selenomethionine, ligase; HET: BTN; 1.80A {Escherichia
coli} (A:)
Length = 80
Score = 40.9 bits (96), Expect = 4e-04
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
+ + +I++ SG +K VE+G + PL+ E
Sbjct: 40 CIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain,
pyruvate dehydrogenase; NMR {Escherichia coli} (A:)
Length = 80
Score = 40.5 bits (95), Expect = 4e-04
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+ + +E+ +PF+G++K+ +V G ++ G+ ++ FE
Sbjct: 35 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; pyruvate dehydrogenase kinase
3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo
sapiens} (B:)
Length = 128
Score = 40.3 bits (94), Expect = 4e-04
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQ-GTPLLTFEDIETTD 94
+ + G + K V G++ + GTPL + E
Sbjct: 70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADI 109
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; lipoyl domain, lipoic acid,
2-oxoacid dehydrogenase; NMR {Homo sapiens} (A:)
Length = 108
Score = 39.4 bits (92), Expect = 8e-04
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQ-GTPLLTFEDIETTD 94
V +S + K V G++ + G +
Sbjct: 50 TVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDI 89
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli} (A:30-190)
Length = 161
Score = 39.6 bits (91), Expect = 8e-04
Identities = 13/128 (10%), Positives = 38/128 (29%), Gaps = 1/128 (0%)
Query: 200 TMMKNLFEKNAVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYL 259
K + + +R ++ L+L + ++ L + + A +
Sbjct: 35 PEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEM 94
Query: 260 KEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLM 319
+ + L + + I++P+AG + + +Q
Sbjct: 95 AVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVT-QITTLQGQTVIAAQQAP 153
Query: 320 KIVPHSKL 327
I+ + +
Sbjct: 154 NILTLADM 161
Score = 36.1 bits (82), Expect = 0.010
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIET 92
I +P +G + + G ++ +
Sbjct: 126 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 160
Score = 34.6 bits (78), Expect = 0.025
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 55 NVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
V++ + SG +K V G ++ + L +
Sbjct: 1 RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 35
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin,
domain, BCCP, X-RAY diffraction, structural genomics,
NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C*
2ejg_C* 2evb_A (A:)
Length = 74
Score = 39.3 bits (92), Expect = 0.001
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTF 87
+ EI SP G++K+ V+ G + G PL+
Sbjct: 35 VLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
Score = 35.1 bits (81), Expect = 0.017
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 54 DNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
+ + +P G + + V G ++ G LL E
Sbjct: 3 VSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE 37
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet,
hammerhead, biocytin; NMR {Propionibacterium
freudenreichiisubsp} (A:)
Length = 77
Score = 38.9 bits (91), Expect = 0.001
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTF 87
+ EI +P G ++K V+ + G L+
Sbjct: 37 LVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
Score = 36.2 bits (84), Expect = 0.008
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 53 EDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
+ EI +P +G + K V+ G + G +L E
Sbjct: 5 KAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid,
lipoyl domain, 2-oxoacid dehydrogenase, structural
genomics, NPPSFA; NMR {Homo sapiens} (A:)
Length = 98
Score = 39.0 bits (91), Expect = 0.001
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQ-GTPLLTFEDIETTD 94
EI + VV + + GI+ K VE GS+ ++ G+ + +
Sbjct: 43 EIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGEDW 89
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; pyruvate dehydrogenase
kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A
{Homo sapiens} PDB: 3crl_C* (C:)
Length = 87
Score = 38.5 bits (90), Expect = 0.002
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQ-GTPLLTFED 89
+ + G + K V G++ + GTPL +
Sbjct: 48 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta
barrel, copper, copper transport, ION transport,
transport, transport protein; 3.40A {Escherichia coli
k-12} PDB: 3h94_A 3h9t_B (A:119-241)
Length = 123
Score = 37.4 bits (86), Expect = 0.004
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 57 VEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDI 90
+K+P G+I F + G I + + + +
Sbjct: 90 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 123
Score = 30.1 bits (67), Expect = 0.58
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 270 QRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQSQPLMKIV 322
++ +L +K + + T+ +PI G I + + + KI
Sbjct: 70 AGMPEADIRRLIATQKIQTRFTLKAPIDGVIT-AFDLRAGMNIAKDNVVAKIQ 121
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens} (A:)
Length = 84
Score = 36.6 bits (85), Expect = 0.006
Identities = 5/39 (12%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTD 94
++ + G +K G+ + G + E +
Sbjct: 42 IMTLNVQERGRVKYI-KRPGAVLEAGCVVARLELDDLEH 79
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl
domain, beta barrel, transport protein; 2.71A
{Escherichia coli} (A:21-166)
Length = 146
Score = 34.1 bits (77), Expect = 0.033
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 58 EIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
++ SP SG I K V G+ + G
Sbjct: 112 KVTSPISGRIGKSNVTEGALVQNGQATALAT 142
Score = 32.1 bits (72), Expect = 0.14
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 56 VVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
+ E++ SGII K + GS I G L +
Sbjct: 2 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQID 34
Score = 27.1 bits (59), Expect = 4.1
Identities = 13/116 (11%), Positives = 27/116 (23%), Gaps = 3/116 (2%)
Query: 210 AVSQNDLNQQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQN 269
Q K L + + + + + D +Q
Sbjct: 31 YQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQA 90
Query: 270 QRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQ--QSQPLMKIVP 323
+ + + SPI+G I + + Q Q+ L +
Sbjct: 91 NAAVTAAKAAVETARINLAYTKVTSPISGRIG-KSNVTEGALVQNGQATALATVQQ 145
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta
barrel, membrane protein; 2.40A {Pseudomonas
aeruginosa} (A:41-173)
Length = 133
Score = 34.0 bits (77), Expect = 0.034
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 55 NVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIE 91
+ E++ +GII K + GS + G L +
Sbjct: 2 RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPAT 38
Score = 32.1 bits (72), Expect = 0.13
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 58 EIKSPFSGIIKKFQVENGSQIL--QGTPLLTFEDI 90
++ SP SG I + V G+ + Q + T + +
Sbjct: 99 KVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL 133
Score = 27.1 bits (59), Expect = 4.2
Identities = 10/102 (9%), Positives = 26/102 (25%), Gaps = 7/102 (6%)
Query: 228 LELRENIHEQKNMLRHINELYDEANLEFANYLKEI----SRDLEQNQRTFADEMSKLTIL 283
++ +E N + + L + + + +
Sbjct: 32 YQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQA 91
Query: 284 EKTREQKTILSPIAGTIVYNQSFSSSNYAQ--QSQPLMKIVP 323
+LSPI+G I + + Q+ + +
Sbjct: 92 RINLRYTKVLSPISGRIG-RSAVTEGALVTNGQANAMATVQQ 132
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* (A:)
Length = 116
Score = 30.5 bits (68), Expect = 0.45
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 57 VEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIE 91
V IK SG+I + G ++ +G L E +
Sbjct: 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQ 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 29.7 bits (67), Expect = 0.66
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 17/32 (53%)
Query: 136 EQLLDFLGKYHSTCSKVFNYGISSVYRSLKMK 167
E L++ VF YR + M+
Sbjct: 9 ESLVEV----------VF-------YRGMTMQ 23
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 29.1 bits (65), Expect = 1.1
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 29/98 (29%)
Query: 228 LELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTR 287
L R I + + LE E ++Q F E ++ E
Sbjct: 33 LVTR---------EAQIKDWVENE-LEALKL--EAEEIPSEDQNEFLLERTREIHNEAES 80
Query: 288 EQKTIL--------------SPIAGTIVYNQSFSSSNY 311
+ + +P+ G + ++S +Y
Sbjct: 81 QLRAAQQQWGNDFYKRDPRIAPLRGALA---TYSKDSY 115
Score = 29.1 bits (65), Expect = 1.3
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 14/72 (19%)
Query: 83 PLLTFEDIE-TTDLIDLKKVSIKNLRCH----IDTEKSAL------DFLNNKYDVLEKAF 131
P L +++ + ++ IK+ + + E + +FL + +
Sbjct: 22 PNL---NMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEA 78
Query: 132 ESREEQLLDFLG 143
ES+ G
Sbjct: 79 ESQLRAAQQQWG 90
>1gr0_A MYO-inositol-1-phosphate synthase; oxidoreductase, PSI,
protein structure initiative, TB structural genomics
consortium, TB, TBSGC; HET: NAD; 1.95A {Mycobacterium
tuberculosis} (A:1-201,A:313-367)
Length = 256
Score = 28.6 bits (64), Expect = 1.5
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 321 IVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHYADIREKKFKAIIEKID 371
I T A V V++G T +YAD E ++ +
Sbjct: 83 IFASENNTIKIADV-APTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQ 132
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural
genomics, PSI, protein structure initiative, midwest
center for structural genomics; 2.05A {Aquifex aeolicus}
(A:)
Length = 401
Score = 27.5 bits (61), Expect = 3.2
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 261 EISRDLEQNQR------TFADEMSKLTILEKTREQKTILSPIAGTIVYNQSFSSSNYAQQ 314
EI+ +L + QR E IL R KT+ SPIA I N+ + +
Sbjct: 39 EINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFI-RNRDWENWKEKMA 97
Query: 315 SQPL------MKIVP---HSKLTY 329
+ P H+ L+
Sbjct: 98 IEGEPSPSVVPFTRPRPGHADLSG 121
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination,
helicase, hydrolase, DNA repair; HET: DNA; 3.1A
{Escherichia coli} (B:886-964,B:1014-1180)
Length = 246
Score = 26.9 bits (59), Expect = 4.9
Identities = 12/65 (18%), Positives = 21/65 (32%)
Query: 62 PFSGIIKKFQVENGSQILQGTPLLTFEDIETTDLIDLKKVSIKNLRCHIDTEKSALDFLN 121
P S + +L+G L F L+D K + + A
Sbjct: 111 PLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQA 170
Query: 122 NKYDV 126
++YD+
Sbjct: 171 HRYDL 175
>2j8s_A ACRB, acriflavine resistance protein B; membrane
protein/complex, designed ankyrin repeat protein,
multidrug resistance protein; HET: LMT LMU; 2.54A
{Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A*
2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A*
1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A*
1t9t_A* 1t9v_A* ... (A:38-134,A:674-721,A:814-867)
Length = 199
Score = 26.5 bits (58), Expect = 6.6
Identities = 9/111 (8%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 246 ELYDEANLEFANYLKEISRDLEQNQRTFADEMSKLTILEKTREQKTILSPIAGTIVYNQS 305
+ + A ++ L+ E+ + + + E+ + L G
Sbjct: 56 TFESGTDADIA--QVQVQNKLQLAMPLLPQEVQQQGV---SVEKSSSLGTATGFDFELID 110
Query: 306 FSS----SNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVKKGYTATVRF 352
+ ++Q L + H + +++ + +
Sbjct: 111 QAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLPRLERYNGLPSMEILG 161
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- terminal
domain); FAD-binding protein, GR-fold, oxidoreductase;
HET: FAD; 2.10A {Clostridium acetobutylicum}
(A:303-385)
Length = 83
Score = 26.6 bits (59), Expect = 7.1
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 42 ISVSSSGEILNEDNVVEIKSPFSGIIKKFQVENG 75
IS+ S G+I N +S ++
Sbjct: 10 ISIISCGDIENNKPSKVFRSTQEDKYIVCMLKEN 43
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural
genomics, JCSG, PSI, protein structure initiative; HET:
U5P; 2.30A {Thermotoga maritima} (A:)
Length = 221
Score = 26.0 bits (56), Expect = 9.2
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 308 SSNYAQQSQPLMK---IVPH----SKLTYIRAKVTPKQIQ 340
S+ MK +V H KLT +R K T +
Sbjct: 2 GSDKIHHHHHHMKNLVVVDHPLIKHKLTIMRDKNTGPKEF 41
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.133 0.368
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,146,077
Number of extensions: 140038
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 66
Length of query: 440
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 349
Effective length of database: 1,879,794
Effective search space: 656048106
Effective search space used: 656048106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)