RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780386|ref|YP_003064799.1| Type I secretion membrane
fusion protein, HlyD [Candidatus Liberibacter asiaticus str. psy62]
(440 letters)
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
E+ N+ VVEI SP G + + V G+ G L+T +
Sbjct: 36 CEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 76
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 36.1 bits (83), Expect = 0.006
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 59 IKSPFSGIIKKFQVENGSQILQGTPLLTFE 88
I++ SG +K VE+G + PL+ E
Sbjct: 51 IEADKSGTVKAILVESGQPVEFDEPLVVIE 80
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 35.5 bits (82), Expect = 0.009
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFEDIETTDL 95
E+ ++ V I S + G+IKK G PL+ E DL
Sbjct: 40 EVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEALKDL 86
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 34.7 bits (78), Expect = 0.016
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 55 NVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+ E++ +GII K + GS + G L +
Sbjct: 14 RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 48
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 32.8 bits (75), Expect = 0.053
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
EI + V+E+ + GI+ + G+ + L +
Sbjct: 38 EIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 31.4 bits (71), Expect = 0.15
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 48 GEILNEDNVVEIKSPFSGIIKKFQVENGSQILQ-GTPLLTFED 89
EI + + + G + K V G++ + GTPL +
Sbjct: 40 AEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 31.3 bits (71), Expect = 0.16
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLTFED 89
+I + V+E+ + G+I + G +L G L +
Sbjct: 37 DIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 31.0 bits (70), Expect = 0.21
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 49 EILNEDNVVEIKSPFSGIIKKFQVENGSQILQGTPLLT 86
+ EI +P G ++K V+ + G L+
Sbjct: 38 VLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIK 75
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 29.0 bits (64), Expect = 0.81
Identities = 15/169 (8%), Positives = 53/169 (31%), Gaps = 10/169 (5%)
Query: 98 LKKVSIKNLRCHIDTEKSALDFLNNKYDVLEKAFESREEQLLDFLGKYHSTCSKVFNYGI 157
L+ + + L + ++ +S++ Q + + +
Sbjct: 254 LRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD 313
Query: 158 SSVYRSLKMKLTRMRSIYLNRLDLENKSSLLRALLSSHQKDLTMMKNLFEKNAVSQNDLN 217
S +L ++ +L + + L ++ + + + V
Sbjct: 314 SE--PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKT 371
Query: 218 QQERIVYKSTLELRENIHEQKNMLRHINELYDEANLEFANYLKEISRDL 266
+++ V + ++L + ++ N + + E+ +YL+ +
Sbjct: 372 ERDVSVRQRAVDLLYAMCDRSNAQQIVAEM--------LSYLETADYSI 412
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 26.9 bits (59), Expect = 3.7
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 251 ANLEFANYLKEISRDLEQNQ------RTFADEMSKLTILEKTREQKTILSPIAGTIVYNQ 304
A L ++I+ DL + Q E ++ R KT +PI V N+
Sbjct: 23 AGLPLT--AEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPI-TMDVINK 79
Query: 305 SFSSSNYAQQSQPLMKIVPHSKLTYIRAKVTPKQIQHVK 343
++ I K P V
Sbjct: 80 DHQKWLDIMSAED---IEDRLKSKRKITHPRPGHADLVG 115
>d1avca2 a.65.1.1 (A:351-671) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 321
Score = 26.5 bits (58), Expect = 4.3
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 298 GTIVYNQSFSSSNYAQQSQPLMK--IVPHSKLTYIRAKVTPKQIQHVKKGYTATVRFPHY 355
GT+ F+ A+ + MK + I + Q Q +++ + +
Sbjct: 5 GTVRPAGDFNPDADAKALRKAMKGLGTDEDTIIDIITHRSNAQRQQIRQTFKSHFGRDLM 64
Query: 356 ADIREK 361
AD++ +
Sbjct: 65 ADLKSE 70
>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
{Aeromonas hydrophila [TaxId: 644]}
Length = 384
Score = 25.6 bits (56), Expect = 8.5
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 296 IAGTIVYNQSFSSSN-------YAQQSQPLMKIVPHSKLTYIRAKVTPKQI 339
++ I NQS++S N +Q +P + SK+ + ++ I
Sbjct: 171 LSIEIAANQSWASQNGGSTTTSLSQSVRP--TVPARSKIPV-KIELYKADI 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.368
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,583,417
Number of extensions: 74726
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 30
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)