Query gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 426
No_of_seqs 136 out of 2650
Neff 7.2
Searched_HMMs 39220
Date Sun May 29 18:31:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780387.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01663 C4-dicarboxylate tran 100.0 0 0 786.6 45.8 416 11-426 1-417 (428)
2 PRK13027 C4-dicarboxylate tran 100.0 0 0 786.4 45.4 416 11-426 1-418 (442)
3 PRK11283 gltP glutamate/aspart 100.0 0 0 747.3 42.5 411 13-424 2-425 (436)
4 COG1301 GltP Na+/H+-dicarboxyl 100.0 0 0 702.4 40.0 402 14-422 3-410 (415)
5 pfam00375 SDF Sodium:dicarboxy 100.0 0 0 684.4 41.6 385 19-410 1-387 (387)
6 PRK13628 serine/threonine tran 100.0 0 0 651.9 38.2 394 6-412 3-402 (402)
7 KOG3787 consensus 100.0 0 0 642.3 19.7 409 5-420 7-458 (507)
8 COG1823 Predicted Na+/dicarbox 100.0 0 0 506.5 33.2 407 17-425 28-458 (458)
9 COG3633 SstT Na+/serine sympor 100.0 0 0 366.6 20.7 389 14-415 11-405 (407)
10 PRK01663 C4-dicarboxylate tran 95.4 0.16 4E-06 27.0 23.0 96 9-106 3-100 (428)
11 TIGR00832 acr3 arsenical-resis 93.6 0.43 1.1E-05 24.5 16.6 241 15-305 4-271 (375)
12 pfam03812 KdgT 2-keto-3-deoxyg 88.7 1.3 3.3E-05 21.7 5.5 87 20-111 12-98 (314)
13 PRK12460 2-keto-3-deoxyglucona 86.8 1.9 4.9E-05 20.8 5.4 86 21-111 10-95 (308)
14 COG3105 Uncharacterized protei 66.0 8.1 0.00021 17.2 3.5 25 14-38 2-26 (138)
15 TIGR02170 thyX thymidylate syn 54.0 3.6 9.2E-05 19.2 -0.0 22 293-314 189-210 (259)
16 PRK11677 cytochrome d ubiquino 48.3 17 0.00043 15.4 3.2 17 21-37 4-20 (134)
17 PRK05274 2-keto-3-deoxyglucona 45.2 19 0.00048 15.1 6.7 87 20-111 14-101 (305)
18 pfam07271 Cytadhesin_P30 Cytad 45.0 19 0.00048 15.1 4.1 19 158-176 75-93 (279)
19 TIGR00791 gntP transporter, gl 41.8 21 0.00054 14.8 16.0 186 8-202 88-316 (458)
20 TIGR01726 HEQRo_perm_3TM amino 37.5 25 0.00064 14.4 6.3 55 21-75 18-72 (99)
21 TIGR00804 nupC nucleoside tran 36.8 26 0.00065 14.3 8.1 22 90-111 198-219 (425)
22 COG1271 CydA Cytochrome bd-typ 35.2 27 0.0007 14.1 10.1 105 9-114 49-156 (457)
23 COG3329 Predicted permease [Ge 32.3 30 0.00078 13.9 7.2 38 165-202 221-260 (372)
24 COG0798 ACR3 Arsenite efflux p 32.0 31 0.00079 13.8 22.1 273 12-360 9-308 (342)
25 pfam03806 ABG_transport AbgT p 31.9 31 0.00079 13.8 22.1 63 280-343 406-470 (502)
26 pfam06295 DUF1043 Protein of u 31.6 31 0.0008 13.8 2.5 12 25-36 4-15 (128)
27 TIGR01083 nth endonuclease III 30.1 20 0.0005 15.0 0.6 28 280-307 100-128 (192)
28 PRK10617 cytochrome c-type pro 27.9 36 0.00093 13.4 2.9 24 10-33 17-40 (200)
29 PRK09695 glycolate transporter 27.4 37 0.00095 13.4 5.5 43 66-111 102-153 (560)
30 pfam09546 Spore_III_AE Stage I 25.7 40 0.001 13.2 14.5 58 27-93 24-81 (328)
31 pfam03313 SDH_alpha Serine deh 25.4 35 0.00088 13.6 1.2 33 267-299 98-130 (269)
32 TIGR00974 3a0107s02c phosphate 25.3 41 0.001 13.2 2.3 28 281-308 150-179 (302)
33 pfam03672 UPF0154 Uncharacteri 25.2 41 0.001 13.1 1.8 16 22-37 2-17 (64)
34 pfam03605 DcuA_DcuB Anaerobic 25.0 41 0.0011 13.1 12.2 14 62-75 48-61 (364)
35 COG4986 ABC-type anion transpo 24.5 42 0.0011 13.1 4.7 85 20-109 15-103 (523)
36 COG0370 FeoB Fe2+ transport sy 22.9 46 0.0012 12.9 14.6 138 157-306 270-419 (653)
37 PRK00523 hypothetical protein; 20.8 50 0.0013 12.6 3.0 17 21-37 9-25 (73)
38 TIGR00653 GlnA glutamine synth 20.7 51 0.0013 12.6 1.7 92 227-337 304-406 (486)
39 pfam11070 DUF2871 Protein of u 20.4 51 0.0013 12.6 8.5 76 11-92 1-78 (131)
No 1
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=100.00 E-value=0 Score=786.57 Aligned_cols=416 Identities=52% Similarity=0.918 Sum_probs=400.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 26358999999999999999999999577899987666999999999999999999999961343024677799999999
Q gi|254780387|r 11 IRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFL 90 (426)
Q Consensus 11 ~~~~~~~~L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~ 90 (426)
|||+++|+|+.|+++|+++|+++|.++|+++.+++++||+|+|+|||+++||||+|++.||+++++.+++||+++|++.|
T Consensus 1 m~~~~~~~L~~~iligivlGi~~G~~~p~~~~~l~~iG~lFl~lLkmiVvPLIf~sii~gIa~l~~~~~lGrig~~~l~~ 80 (428)
T PRK01663 1 MKKPLYKSLYFQVLVAIIIGILLGHFYPELGVQMKPLGDGFIKLIKMIIAPIIFCTVVTGIAGMEDMKKVGRVGGKALLY 80 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 98728999999999999999999997188888875679999999999999999999999998370505330689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999999999998773024687854344211111001-333443089999988520547863215705799999999
Q gi|254780387|r 91 FFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHI-KSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLF 169 (426)
Q Consensus 91 ~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~~ 169 (426)
|+.+|.+|+.+|+.++.+++||.|.+.+.+..+.+..+.. +..+..++.+++.+++|+|+++++++||+||+++||+++
T Consensus 81 ~~~tt~iA~~igl~~~~~i~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~a~a~gnvL~iI~fAii~ 160 (428)
T PRK01663 81 FEIVSTIALIIGLIVANVVQPGAGMNIDPATLDAKAVAQYAAKAKEQGIVDFLMDIIPTTVVGAFASGDILQVLLFAVLF 160 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999999963375557675541045554103554446699999997876389996658709999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99952156430248989999999999999986545333788999999851074002468999999999998877999999
Q gi|254780387|r 170 GISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGI 249 (426)
Q Consensus 170 GiA~~~~~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~~~~~~~~~~l 249 (426)
|+|+.+.+||++++.+++++++++++|+++|+|+++|+|+||++|++++++|.+.+.++++|+.++|+++.+|.++++++
T Consensus 161 Gial~~~~ek~~~l~~~~~~~~~v~~kii~~Im~laPigVf~lia~~v~~~g~~~l~~l~~~v~~v~~~~~i~~~iv~~~ 240 (428)
T PRK01663 161 GFALARLGEKGKPVFDFIESLSHVLFGIVNMIMKLAPIGAFGAMAFTIGKYGVGSLVQLGQLIGCFYLTCILFVFVVLGA 240 (428)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987414012079999999999999999999998899999999999997148999999999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99632866034432000146777642143100799999998448997584467677775337521589999999999850
Q gi|254780387|r 250 LARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQAT 329 (426)
Q Consensus 250 ~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~~~~~~~iFia~~~ 329 (426)
+.+++|+||++|+|+++|++++||+|+||+||+|+++||+||+|+||++++|++|+|+|+||||+|+|++++++|++|.|
T Consensus 241 i~~~~~~np~~f~k~~~~a~~~Af~T~SSaATlPvt~~~~e~lGv~~~ia~FvlPLGaTinmdGtaiy~~~~~iFiaq~~ 320 (428)
T PRK01663 241 IARLTGFSIFKFIRYIKEELLIVLGTSSSESALPRMMEKMEKLGCKKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQAT 320 (428)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99981998899999989989998641673114079999999769692405466205213189834999999999989985
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98799899999999999996213684325899999999861599899999999777764356789987677999999998
Q gi|254780387|r 330 NVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSR 409 (426)
Q Consensus 330 gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~~i~ll~~id~~~D~~rT~~NV~gd~~~a~iv~~ 409 (426)
|+|+++++++.++++++++|+|+||+||+|++++..+++...++|.|++++++++||++||+||++||+||++++.+|+|
T Consensus 321 Gi~l~~~~~~~i~~~~~l~s~G~aGVPg~~lv~l~~vl~~~g~lP~e~i~li~~id~~~Dm~rT~~NV~Gd~~~a~iV~~ 400 (428)
T PRK01663 321 NTPLSIGHQITLLAVLLLTSKGAAGVTGSGFIVLAATLSAVPHIPVAGLALILGIDRFMSEARALTNLVGNGVATVVVAK 400 (428)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999992345688587999999999975888697899999899662365999857877799999888
Q ss_pred HHCCCCHHHHHHHHCCC
Q ss_conf 82510489888763789
Q gi|254780387|r 410 WEKKLDPKLFNKYIGIE 426 (426)
Q Consensus 410 ~~~~~d~~~~~~~~~~~ 426 (426)
+||++|||+||++.++.
T Consensus 401 ~e~~ld~~~~~~~~~~~ 417 (428)
T PRK01663 401 WEKELDREKLDRVLNGR 417 (428)
T ss_pred HCCCCCHHHHHHHHCCC
T ss_conf 50754799999884789
No 2
>PRK13027 C4-dicarboxylate transporter DctA; Reviewed
Probab=100.00 E-value=0 Score=786.36 Aligned_cols=416 Identities=45% Similarity=0.800 Sum_probs=399.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 26358999999999999999999999577899987666999999999999999999999961343024677799999999
Q gi|254780387|r 11 IRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFL 90 (426)
Q Consensus 11 ~~~~~~~~L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~ 90 (426)
|+||++|+|+.||++|+++|+++|.++|++..+++++||+|+|+|||+++||||+|++.|+++++|.++.||++.|++.|
T Consensus 1 m~k~~~~~L~~~IligivlGi~~G~~~p~~~~~i~~~G~lFl~lLkmiVvPLIf~sIi~gIa~l~~~~~lGrig~kti~~ 80 (442)
T PRK13027 1 MMKKFLRSLFGQVVIALVLGVALGAFFPHFAESLKPLGDGFIKLIKMLIGPIVFCVVVSGIAGAGDLKKVGRVGLKAVIY 80 (442)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 97528898999999999999999997388899997789999999999999999999999996384625213699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999999999998773024687854344211111001--33344308999998852054786321570579999999
Q gi|254780387|r 91 FFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHI--KSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALL 168 (426)
Q Consensus 91 ~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~ 168 (426)
|+.+|.+|+.+|+.++++++||.|.+.+....+.+..... +..+..+..|++.+++|+|+++++++||+||+++||++
T Consensus 81 fl~tt~iA~~igl~~~~l~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Ni~~a~a~gnvL~vIvFAil 160 (442)
T PRK13027 81 FEVMTTIALVIGLVLAYLTGPGVGMNIDLRSLDAASLAGYAKNAQSLKGTAGFLMKLIPTTAVDAFAKGDILQVLLFSVL 160 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999999999965564456683220145543211455344669999999678758988655770999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99995215643024898999999999999998654533378899999985107400246899999999999887799999
Q gi|254780387|r 169 FGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLG 248 (426)
Q Consensus 169 ~GiA~~~~~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~~~~~~~~~~ 248 (426)
+|+|+.+.+||++++.+++++++++++|+++|+|+++|+|+||++|++++++|.+.+.++++|+.++|+++++|.+++++
T Consensus 161 ~Gial~~~~e~~~~l~~~~~~l~~v~~kii~~Ii~laPigVfaliA~~v~~~g~~~l~~l~~~v~~~~~~~~i~~~i~~~ 240 (442)
T PRK13027 161 FGSALSLVGEKAKRVNSLIDELSHVFFRIMGFIIKLAPLGVLGAIAFTTGKYGVGSLKQLGMLVAVFYLTCFVFVVVVLG 240 (442)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998742744446999999999999999999997999999999999999701899999999999999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99963286603443200014677764214310079999999844899758446767777533752158999999999985
Q gi|254780387|r 249 ILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQA 328 (426)
Q Consensus 249 l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~~~~~~~iFia~~ 328 (426)
++.+++|+||++|+|+++|++++||+|+||+||+|+++||+||+|+||++++|++|+|+|+||||||+|++++++|+||+
T Consensus 241 ~i~~~~~~~p~~f~k~~~~~~~~Af~T~SSaATLPvt~~~~eklGV~~~ia~fvlPLGaTiNmdGtAiy~~~~~iFiAq~ 320 (442)
T PRK13027 241 AVMRLAGFSVFKLIRYLREELLIVLGTASSDAVLPQVMRKLEHMGIKDSTVGLVIPTGYSFNLDGFSIYLTLAVVFIAQA 320 (442)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99998199888988750167888863242011456999999975979200335555545038860499999999998998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 09879989999999999999621368432589999999986159989999999977776435678998767799999999
Q gi|254780387|r 329 TNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVS 408 (426)
Q Consensus 329 ~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~~i~ll~~id~~~D~~rT~~NV~gd~~~a~iv~ 408 (426)
||++++++|++.++++++++|+|+|||||+|++++..++++.+++|.|++++++++||++||+||++||+||++++.+|+
T Consensus 321 ~Gi~ls~~~~~~i~~~a~lasiG~aGVPg~g~v~l~~vL~~~g~lP~e~i~lil~iD~~lDm~RT~~NV~Gd~~~a~iV~ 400 (442)
T PRK13027 321 TNTPLSMHDLITILLVSLVTSKGAHGIPGSAIVILAATLSAIPAIPVLGLVLILPVDWFMGIARALTNLIGNCVATVVVA 400 (442)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 28999999999999999999623578863789999999997577759789999858966305389874466658999987
Q ss_pred HHHCCCCHHHHHHHHCCC
Q ss_conf 882510489888763789
Q gi|254780387|r 409 RWEKKLDPKLFNKYIGIE 426 (426)
Q Consensus 409 ~~~~~~d~~~~~~~~~~~ 426 (426)
|||||+|||.||+.+++|
T Consensus 401 ~~e~~lD~~~~~~~~~~~ 418 (442)
T PRK13027 401 RWENDIDRARAQAVLNGE 418 (442)
T ss_pred HHCCHHHHHHHHHHHCCC
T ss_conf 841632099999985799
No 3
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=100.00 E-value=0 Score=747.25 Aligned_cols=411 Identities=36% Similarity=0.645 Sum_probs=379.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 3589999999999999999999995778--------99987666999999999999999999999961343024677799
Q gi|254780387|r 13 PPLYKILYIQVLVAIFSGMALGHFVPQI--------GVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIF 84 (426)
Q Consensus 13 ~~~~~~L~~~ilig~v~Gi~~G~~~~~~--------~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~ 84 (426)
|+...+|..||++|+++|+++|.++++. ..|++++||+|+|+|||+++||||+|++.|+++++|.++.||++
T Consensus 2 kk~k~sL~~qIliglvlGi~~G~~~~~~~~~~~~~~~~~l~~~G~lFl~lLkmlVvPLVf~Sii~gIa~l~~~~~lgkig 81 (436)
T PRK11283 2 KNIKFSLAWQILIALVLGILLGAYLHYHSDSRDWLVSNLLSPAGDIFIRLIKMIVVPIVISTLIVGIAGVGDAKKLGRIG 81 (436)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHH
T ss_conf 85125789999999999999999861124202589988873249999999999999999999999998541504103599
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH----HHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCH
Q ss_conf 999999999999999999999877302468785434421111----1001333443089999988520547863215705
Q gi|254780387|r 85 WKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTES----IAHIKSSHAKSFIGFMQDMIPDTALSALTSGNIL 160 (426)
Q Consensus 85 ~kti~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL 160 (426)
.|++.||+.+|.+|+.+|+.++++++||.|.+.+.......+ ..+.......++.+++.+++|+|+|+++++||+|
T Consensus 82 ~~tl~~f~~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~liP~Ni~~ala~gn~L 161 (436)
T PRK11283 82 AKTIIYFEVITTVAIILGITLANVFQPGAGIDMSQLATVDISKYQSTTEEVQSHSHGLMGTILSLIPTNIFASMAKGEML 161 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHCCCCH
T ss_conf 99999999999999999999999918775777001100014544310111045664399999996899779997567727
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7999999999995215643-024898999999999999998654533378899999985107400246899999999999
Q gi|254780387|r 161 QTLIVALLFGISLSLVGEK-SDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATS 239 (426)
Q Consensus 161 ~iivfai~~GiA~~~~~~k-~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~ 239 (426)
|+++||++||+|+.+.++| ++|+.+++++++++++|+++|+|+++|+|+||++|+.++++|++.+.++++++.++|.++
T Consensus 162 ~vIvfAi~fGial~~l~~~~~~~l~~~~~~l~~v~~kiv~~Vi~laPigVfaLiA~~~a~~g~~~l~~l~~~v~~v~~~~ 241 (436)
T PRK11283 162 PIIFFSVLFGLGLSSLPATHREPLVTVFRSVSETMFKVTHMVMRYAPVGVFALIAVTVANFGFASLWPLAKLVLLVYFAI 241 (436)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999724110058999999999999999999999869999999999999715999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 88779999999963286603443200014677764214310079999999844899758446767777533752158999
Q gi|254780387|r 240 AFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYIT 319 (426)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~~~~ 319 (426)
.+|.+++++++.++.|+||++|+|+++|++++||+|+||+||+|+++||+||+|+||++++|++|+|+|+||||+|+|++
T Consensus 242 ~~~~~v~~~li~~~~~~~p~~f~~~~~~~~~~Af~T~SS~AtLPvtm~~~e~lGv~~~ia~fvlPLGatinmdGtaiy~~ 321 (436)
T PRK11283 242 LFFALVVLGIVARLCGLSIWILIRILKDELILAYSTASSETVLPRIIEKMEAYGAPKSITSFVVPTGYSFNLDGSTLYQS 321 (436)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHEECCCCCEECCCCHHHHHH
T ss_conf 99999999999999576689999998999999973466200557999999873988002212202531237872889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998509879989999999999999621368432589999999986159989999999977776435678998767
Q gi|254780387|r 320 LATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIG 399 (426)
Q Consensus 320 ~~~iFia~~~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~~i~ll~~id~~~D~~rT~~NV~g 399 (426)
++++|+||+||+|++++|++.++++++++|+|+|||||+|++++..++... |+|.|++++++++||++||+||++||+|
T Consensus 322 ~~~iFiaq~~Gi~l~~~~~~~i~l~~~l~s~G~aGVPg~~~v~~~~vl~~~-GlP~e~i~li~~id~~~Dm~rT~~NV~G 400 (436)
T PRK11283 322 IAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSV-GIPLEGLAFIAGVDRILDMARTALNVVG 400 (436)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 999999999489998899999999999995334688687999999999977-9989899999999977356389885577
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 7999999998825104898887637
Q gi|254780387|r 400 NAVMTVVVSRWEKKLDPKLFNKYIG 424 (426)
Q Consensus 400 d~~~a~iv~~~~~~~d~~~~~~~~~ 424 (426)
|++++.+|+||||++|||+++-..+
T Consensus 401 d~~~a~ivak~e~~~d~e~~~a~~~ 425 (436)
T PRK11283 401 NALAVLVIAKWEHKFDRKKALAYER 425 (436)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 7899999877417326999987688
No 4
>COG1301 GltP Na+/H+-dicarboxylate symporters [Energy production and conversion]
Probab=100.00 E-value=0 Score=702.36 Aligned_cols=402 Identities=45% Similarity=0.797 Sum_probs=381.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 5899999999999999999999957789--99876669999999999999999999999613430246777999999999
Q gi|254780387|r 14 PLYKILYIQVLVAIFSGMALGHFVPQIG--VQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLF 91 (426)
Q Consensus 14 ~~~~~L~~~ilig~v~Gi~~G~~~~~~~--~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~ 91 (426)
+..++++.|+++|+++|+++|.++|+.. .+++++||+|+|++||+++|+||++++.||++++|.++.||+++|++.||
T Consensus 3 ~~~~~l~~qv~iglilGi~~Gl~~~~~~~~~~l~plg~~Fi~Likmii~PlVf~tlv~gIa~~~~~k~~gr~g~ktl~yf 82 (415)
T COG1301 3 SKKLSLYLQVLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVLGIASLGDLKKLGRLGGKTLIYF 82 (415)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 30224999999999999999853565331256503889999999999999999999999974103277799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999877302468785434421111100133344308999998852054786321570579999999999
Q gi|254780387|r 92 FVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGI 171 (426)
Q Consensus 92 l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~~Gi 171 (426)
+.+|.+|..+|+.+++.+|||.|.+.+..+.+..... ..++.+++.+++|+|+|+++++||+||+++||+++|+
T Consensus 83 ~~tt~~A~~iGl~~~~~~~Pg~g~~~~~~~~~~~~~~------~~~~~~~l~~iiP~ni~~a~a~g~vLqil~fail~G~ 156 (415)
T COG1301 83 LVTTTLAIAIGLVVANVLQPGAGINIDPATLDTGAES------EVSILDFLLDIIPTNIFGALAEGNVLQILFFAILFGL 156 (415)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC------CCHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999999808887777771015764212------1039999886168974777257981999999999999
Q ss_pred HHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 95215643024-89899999999999999865453337889999998510740024689999999999988779999999
Q gi|254780387|r 172 SLSLVGEKSDT-IRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGIL 250 (426)
Q Consensus 172 A~~~~~~k~~~-l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~~~~~~~~~~l~ 250 (426)
|+...+||+++ +.+++|+++++++|+++|+|+++|+|+|+++|..++++|++.+.++++++.++|.++.++.+++|+.+
T Consensus 157 al~~~~~~~~~~v~~~~~~~~~~m~~v~~~vm~laPigvf~~~a~~v~~~G~~~L~~l~~~v~~~~~~~~l~~~vvl~~~ 236 (415)
T COG1301 157 ALAALGEKGKPPVENLFESLSEAMFKVTNFVMRLAPIGVFGLMAFTVAKYGFGSLLSLGKLVLAVYLGLLLFVFVVLGLL 236 (415)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99875422423799999999999999999999971499999999999984776799999999999999999999999999
Q ss_pred HH-HCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 96-328660344320001467776421431007999999984-4899758446767777533752158999999999985
Q gi|254780387|r 251 AR-FCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEE-AGCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQA 328 (426)
Q Consensus 251 ~~-~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~-~gv~~~i~~fviPlG~tinm~G~a~~~~~~~iFia~~ 328 (426)
.+ ++|+||+|++|.++|++++||+|+||.||+|++|||+|| +|++|++++|++|+|+|+||||+++|++++++|++|.
T Consensus 237 ~~~~~g~s~~~~~r~~~~~~~~Af~T~SS~atLPv~m~~~e~~~Gv~~~i~~fvvPlG~t~nldGtaiy~~~a~~FIAq~ 316 (415)
T COG1301 237 LKLLSGFSPFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPKSIVSFVVPLGYTFNLDGTAIYQTLAALFIAQA 316 (415)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEECCCCHHHHHHHHHHHHHHH
T ss_conf 99954888899999988999999853204356689999999856998434679953574258861199999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 09879989999999999999621368432589999999986159989999999977776435678998767799999999
Q gi|254780387|r 329 TNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVS 408 (426)
Q Consensus 329 ~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~~i~ll~~id~~~D~~rT~~NV~gd~~~a~iv~ 408 (426)
||+|+++.|++.++++++++|+|+|||||+++++++.+++++ |+|.|++++++++||++||+||++||+||++++.+|+
T Consensus 317 ~g~~Ls~~~~l~~~~~~~l~S~G~AGVpg~~~v~l~~~L~~v-glp~~g~aLi~gid~~ld~~rT~~Nv~Gd~~~~~iva 395 (415)
T COG1301 317 YGIPLSLGQQLTLLLVAMLASKGAAGVPGGGLVVLAATLSSV-GLPLEGLALILGIDRFLDMARTATNVTGDAVATVVVA 395 (415)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 489988999999999999995035899842999999999982-7808789999999999988899999875578988753
Q ss_pred HHHCC-CCHHHHHHH
Q ss_conf 88251-048988876
Q gi|254780387|r 409 RWEKK-LDPKLFNKY 422 (426)
Q Consensus 409 ~~~~~-~d~~~~~~~ 422 (426)
|||++ .++++++++
T Consensus 396 ~~e~~~~~~~v~~~~ 410 (415)
T COG1301 396 KWEGEEKADAVLSEE 410 (415)
T ss_pred HHCCCCCHHHHHHCC
T ss_conf 130543177887244
No 5
>pfam00375 SDF Sodium:dicarboxylate symporter family.
Probab=100.00 E-value=0 Score=684.35 Aligned_cols=385 Identities=35% Similarity=0.650 Sum_probs=366.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999957789998766699999999999999999999996134302467779999999999999999
Q gi|254780387|r 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFA 98 (426)
Q Consensus 19 L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~l~tt~iA 98 (426)
|..|+++|+++|+++|.++|+...|++++||+|+|++||+++|+||+|++.|++++++.++.||++.|++.||+.++.+|
T Consensus 1 L~~~il~alvlGi~~G~~~~~~~~~l~~iG~lFi~lLkm~vvPLIf~sii~gI~~l~~~~~~g~i~~~~~~~~l~tt~iA 80 (387)
T pfam00375 1 LTLQILIGLVLGVLLGLFFPEVAGWLKPLGDIFINLLKMLVVPLVFFSIVSGIASLGDGKKLGKLGGKTLLYFLVTTAIA 80 (387)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999869999999889999999999999999999999999826360322468999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999998773024687854344211111001333443089999988520547863215705799999999999521564
Q gi|254780387|r 99 LVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGE 178 (426)
Q Consensus 99 ~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~~GiA~~~~~~ 178 (426)
+.+|+.++++++||.+.+.+... .+.+..+.+++.|++.+++|+|+++++++||+||+++||+++|+|+.+++|
T Consensus 81 ~~igl~~~~~~~pg~~~~~~~~~------~~~~~~~~~~~~~~i~~~iP~Ni~~a~~~gniL~iivfai~~Gia~~~~~~ 154 (387)
T pfam00375 81 AIIGLLVALLFQPGVGLLISAAA------ESAQASESPSLLDFLLNIIPSNIFAALAEGNVLQVIVFAILFGIALAALGE 154 (387)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCC------CCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999981888665544100------135655555499999997889689997658819999999999999997342
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCC
Q ss_conf 30248989999999999999986545333788999999851074002468999999999998877999999996-32866
Q gi|254780387|r 179 KSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILAR-FCRFS 257 (426)
Q Consensus 179 k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~~~~~~~~~~l~~~-~~~~~ 257 (426)
|++++++++|+++++++|+++|+|+++|+|+||++|+.++++|.+.+.++++|+.++|.++++|.+++++++.+ ++|+|
T Consensus 155 k~~~l~~~~~~~~~v~~~ii~~ii~l~Pigvf~lia~~~~~~g~~~l~~l~~~~~~~~~~~~i~~~v~~~~i~~~~~~~n 234 (387)
T pfam00375 155 KGKPLLKFLESLNEIIMKVVNWVMKLAPIGVFALIANTVGTFGLGTLGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGLN 234 (387)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 24359999999999999999999998899999999999997129999999999999999999999999999999981788
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 0344320001467776421431007999999984-489975844676777753375215899999999998509879989
Q gi|254780387|r 258 IIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEE-AGCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQATNVPLSLT 336 (426)
Q Consensus 258 p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~-~gv~~~i~~fviPlG~tinm~G~a~~~~~~~iFia~~~gi~l~~~ 336 (426)
|+|++|+++|++++||+|+||+||+|+++||+|| +|+||+++||++|+|+|+||||+|+|++++++|++|.||+|++++
T Consensus 235 p~~~~k~~~~~~~~Af~T~SS~atlP~~l~~~~~~lgv~~~i~~fv~PlG~t~n~~G~al~~~~~~if~a~~~g~~l~~~ 314 (387)
T pfam00375 235 PFKFLKKILPALLTAFSTASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTAIYLAVAAIFIAQAYGVDLSLG 314 (387)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999986788898730043203678999999985696802145774033013899744899999999999909999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999962136843258999999998615998999999997777643567899876779999999988
Q gi|254780387|r 337 DQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRW 410 (426)
Q Consensus 337 ~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~~i~ll~~id~~~D~~rT~~NV~gd~~~a~iv~~~ 410 (426)
+++.++++++++|+|++|+||++++.+..++.. .|+|.|++++++++||++||+||++||+||++++.+|+|+
T Consensus 315 ~~~~~~~~~~l~s~g~agvPg~~~v~~~~vl~~-~glP~e~i~ll~~id~~~D~~rT~~Nv~gd~~~a~iv~~~ 387 (387)
T pfam00375 315 QLLLLILTATLASIGAAGVPGGGLVALALVLSA-LGLPVEGIALILAIDRILDMFRTALNVTGDAVAAVIVAKL 387 (387)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999864368846799999999986-6999999999999998716638999675368899998459
No 6
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=100.00 E-value=0 Score=651.88 Aligned_cols=394 Identities=21% Similarity=0.314 Sum_probs=348.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 11000263589999999999999999999995778999876669999999999999999999999613430246777999
Q gi|254780387|r 6 QVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFW 85 (426)
Q Consensus 6 ~~~~~~~~~~~~~L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~ 85 (426)
+++..+|+-...+|+.|+++|+++|+++|.++|+++.|++++||+|+|++||+++|+||++++.++++.++.++ ++++
T Consensus 3 ~~~~~~~~~~k~sL~~~IligivlGi~~G~~~~~~~~~i~~~G~iFl~lLkmiv~plvf~~Iv~~i~~~~~~~~-~~~~- 80 (402)
T PRK13628 3 QMSSLLRRLARGSLVKQILIGLVLGILLALLSPPAAEAVGLLGTLFVGALKAVAPILVFVLVMASIANHKKGQK-TNIR- 80 (402)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHH-
T ss_conf 68999999985887999999999999999963899999956999999999999999999999999827614463-5599-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHH
Q ss_conf 99999999999999999999877302468785434421111100133344308999998852054786321570579999
Q gi|254780387|r 86 KAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIV 165 (426)
Q Consensus 86 kti~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivf 165 (426)
+.+.+|+.+|.+|+..++..+.++.|+.+.+....+ .....+..+..+.+.+.+|+|+++++++||+||+++|
T Consensus 81 ~~~~~~~~tT~~a~~~~~~~~~l~p~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~i~~N~i~a~a~gn~L~vi~F 153 (402)
T PRK13628 81 PILVLYLLGTFLAALVAVVASFLFPTTLVLVASAAD-------ISPPQGIGEVLKTLLLKLVDNPINALLNANYIGILAW 153 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH-------CCCCCCHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHH
T ss_conf 999999999999999999999991765555531110-------1476225789999887437867999871357999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999995215643024898999999999999998654533378899999985107400246899999999999887799
Q gi|254780387|r 166 ALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILG 245 (426)
Q Consensus 166 ai~~GiA~~~~~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~~~~~~~ 245 (426)
|+++|+|+++.+|+. ++++++++++++|+++|||+++|+|+||++|++++++|++.+.++++++.++|.+++++.++
T Consensus 154 ai~~Gial~~~~~~~---~~~~~~~~~~~~kiv~~Vm~laPigVfalia~~v~~~G~~~l~~l~~~~~v~~~~~~~~~~v 230 (402)
T PRK13628 154 AIGLGLALRHASDTT---KNVVNDLSEAVSQIVKFVIRFAPIGIFGLVASTLAETGFSALAGYAQLLAVLVGCMLFVALV 230 (402)
T ss_pred HHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998602768---99999999999999999999878999999999999821999999999999999999999999
Q ss_pred HHHHHHH-HCCCCHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999996-328660344-32000146777642143100799999998448997584467677775337521589999999
Q gi|254780387|r 246 VLGILAR-FCRFSIIKL-IIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLATL 323 (426)
Q Consensus 246 ~~~l~~~-~~~~~p~~~-~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~~~~~~~i 323 (426)
+++++.+ ..|+||+++ +|+++|++++||+|+||+||+|+++||+||+|+||+++||++|+|+|+||||+|+|++++++
T Consensus 231 ~~~li~~~~~~~np~~~~~k~~~~~~l~Af~T~SS~AtLPvtm~~~eklGV~~~ia~FvlPLGaTiNmdGtaiy~~v~~i 310 (402)
T PRK13628 231 VNPLIVFWKIRRNPYPLVFTCLRESGVTAFFTRSSAANIPVNMALCEKLGLDEDTYSVSIPLGATINMAGAAITITVLTL 310 (402)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 99999999981583899999988999999983563114578999999749895536787205430089708999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_conf 99985098799899999999999996213684325899999999861599899999999777764----35678998767
Q gi|254780387|r 324 FISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFM----SECRSVTNFIG 399 (426)
Q Consensus 324 Fia~~~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~~i~ll~~id~~~----D~~rT~~NV~g 399 (426)
|++|.||+|++++|++.++++++++|+|+|||||++++.+..++... |+|.|...+++++|+++ ||+||++||+|
T Consensus 311 Fiaq~~Gi~ls~~~~i~iv~~~~l~s~G~aGVPg~~lv~l~~vl~~~-GlP~e~~~~i~~i~~ii~~~~Dm~rTa~NV~G 389 (402)
T PRK13628 311 AAVHTLGIPVDLPTALLLSVVAAISACGASGVAGGSLLLIPLACSLF-GISNDIAMQVVAVGFIIGVLQDSAETALNSST 389 (402)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999689999999999999999982775787366999999999964-99915678999999999986251057887656
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 7999999998825
Q gi|254780387|r 400 NAVMTVVVSRWEK 412 (426)
Q Consensus 400 d~~~a~iv~~~~~ 412 (426)
|++++++|+|.|+
T Consensus 390 D~~~t~iv~~~e~ 402 (402)
T PRK13628 390 DVLFTAAACQAED 402 (402)
T ss_pred HHHHHHHHHHCCC
T ss_conf 6899998742369
No 7
>KOG3787 consensus
Probab=100.00 E-value=0 Score=642.29 Aligned_cols=409 Identities=25% Similarity=0.421 Sum_probs=361.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 01100026358999999999999999999999577------899987666999999999999999999999961343024
Q gi|254780387|r 5 VQVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQ------IGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMK 78 (426)
Q Consensus 5 ~~~~~~~~~~~~~~L~~~ilig~v~Gi~~G~~~~~------~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~ 78 (426)
-+...++|+++. ..-.+.|+++|..+|...++ ...+++++|++|+|+|||+++|||++|+++|.+++ |.+
T Consensus 7 ~~~~~~l~~N~L---lllTv~~Vv~G~~lGf~LR~~~ls~~~i~yi~FPGElfmrmLkmmILPLI~SSlisgla~L-Da~ 82 (507)
T KOG3787 7 ERVRSFLRENLL---LLLTVSGVVLGVLLGFLLRPLSLSPDEIMYISFPGELLMRMLKMMILPLIVSSLISGLASL-DAK 82 (507)
T ss_pred HHHHHHHHHCHH---HHHHHHHHHHHHHHHHEECCCCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 899999862636---7899999999885530403788993126656177799999999999999999998877631-830
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHH----
Q ss_conf 6777999999999999999999999998773024687854344211111001333443089999988520547863----
Q gi|254780387|r 79 VIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSAL---- 154 (426)
Q Consensus 79 ~~gki~~kti~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~---- 154 (426)
..||+|.|++.||..||++|+++|+.+...+|||.+..... ...+...+.+.+...++.|.++|++|+|+++|-
T Consensus 83 ~sGrlg~~av~YY~~TT~~Av~lGI~lV~~IhPG~~~~~~~--~~~~~~~~~~vs~~DtfLDLiRNmFPeNlvqAtf~q~ 160 (507)
T KOG3787 83 ASGRLGMRAVVYYMSTTIIAVILGIALVLIIHPGDPTKKNE--LGREGLIDSNVSTLDTFLDLIRNMFPENLVQATFQQY 160 (507)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 02430488999999999999999884068863898454044--6756666665441889999998618288999999877
Q ss_pred ---------------------------HH-CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------------------21-57057999999999995215643024898999999999999998654533
Q gi|254780387|r 155 ---------------------------TS-GNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAP 206 (426)
Q Consensus 155 ---------------------------a~-gniL~iivfai~~GiA~~~~~~k~~~l~~~~~~~~~v~~kii~~vi~laP 206 (426)
.+ -|+|++++|++.||++++++|||++.+.+||+++++++||++.|+||++|
T Consensus 161 ~T~y~~~~~~~~~~~t~~~~~~~~~~~~~GmNvLGlVvF~~~fGivig~lG~~g~~lv~FF~~L~e~iMklV~~iMWy~P 240 (507)
T KOG3787 161 QTKYKPVTKASPGNATEEALPKGVPGYTDGMNVLGLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSP 240 (507)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 04788602568887642211367643036864034899999899999852300179999999999999999999999803
Q ss_pred HHHHHHHHHHHHHC-CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 37889999998510-74002-468999999999998877999999996-3286603443200014677764214310079
Q gi|254780387|r 207 LGAFGAMSFTIGKY-GLSSI-SNLIFLVFCLYATSAFFILGVLGILAR-FCRFSIIKLIIFLKEEVLLVLSTSSSESALP 283 (426)
Q Consensus 207 igvf~lia~~~a~~-g~~~l-~~l~~~v~~~~~~~~~~~~~~~~l~~~-~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP 283 (426)
+||.+|+|..+-+. +.... ..|++|+++++++..+|.++++|++++ ++|+||++|++.+..++++||+|+||.||||
T Consensus 241 vGI~fLIagkIlem~Dl~~~~~~Lg~Yv~TVi~GL~iH~~i~lPliYF~~TrkNP~~f~~Gm~Qal~TA~gTsSSsATLP 320 (507)
T KOG3787 241 VGILFLIAGKILEMEDLGVTARQLGMYVVTVILGLFIHGFIVLPLIYFVVTRKNPFRFIAGLLQALATAFGTASSSATLP 320 (507)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 54899997766123569999999889999999999999988865304778746818999989999999975045545422
Q ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999998-448997584467677775337521589999999999850987998999999999999962136843258999
Q gi|254780387|r 284 GLMKKME-EAGCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFIT 362 (426)
Q Consensus 284 ~~l~~~e-~~gv~~~i~~fviPlG~tinm~G~a~~~~~~~iFia~~~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~ 362 (426)
+++||+| ++|++|++++||+|+|+|+||||+|+|++++++|+||++|++++++|.+.+.++++.+|+|+||||.+|+++
T Consensus 321 itfkCleEn~gVD~RiTRFVLPvGATINMDGtALYEAVAaIFIAQln~~~Ls~gqivTIsiTAT~ASIGaAgiP~AGLVT 400 (507)
T KOG3787 321 ITFKCLEENLGVDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQLNNVELSFGQIVTISITATAASIGAAGVPQAGLVT 400 (507)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHCCEECCCEEEEEEEEHHHHHCCCCCCCCCCHHH
T ss_conf 77999987189872302365035754357748999999999999971741010108998744355641034787445322
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHH
Q ss_conf 99999861599899999999777764356789987677999999998825-10489888
Q gi|254780387|r 363 LAATITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEK-KLDPKLFN 420 (426)
Q Consensus 363 ~~~~~~~~~glP~~~i~ll~~id~~~D~~rT~~NV~gd~~~a~iv~~~~~-~~d~~~~~ 420 (426)
|..++.++ |+|.+.+.+++++||++||.||++||.||+.+|.+|.|..+ ++|++.-.
T Consensus 401 m~iVLtaV-gLP~~DisLi~aVDWllDR~RT~vNVlGDa~gagiv~hl~~~~l~~~~~~ 458 (507)
T KOG3787 401 MLIVLTAV-GLPTKDISLIFAVDWLLDRLRTTVNVLGDALGAGIVEHLSKKELDAADAQ 458 (507)
T ss_pred HHHHHHHC-CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 23556645-99714135776657788888887774145888999999977653000158
No 8
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=100.00 E-value=0 Score=506.45 Aligned_cols=407 Identities=20% Similarity=0.351 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999999999999999995-----------778999876669999999999999999999999613430246777999
Q gi|254780387|r 17 KILYIQVLVAIFSGMALGHFV-----------PQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFW 85 (426)
Q Consensus 17 ~~L~~~ilig~v~Gi~~G~~~-----------~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~ 85 (426)
.++..++++|+++|+++|... .|...|++.+|+.|+++|||++.||||.||..++.++++.++.||+..
T Consensus 28 ~slskrV~~aL~lG~vfG~~Lq~~~g~~~~~~~~t~~W~nivgnGYV~LLqMivmPLVfiSIlsAi~kl~~~~~lgKis~ 107 (458)
T COG1823 28 ISLSKRVLIALVLGVVFGLALQYIYGTDSPVLKETIDWFNIVGNGYVRLLQMIVMPLVFISILSAIAKLDNASKLGKISL 107 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 77999999999999999999999966996577767789998503999999999999999999999999871344114689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHH-HHHHH-HCCCCCCCCCHHHHHHHHHHCCHHHHHHHC---CC
Q ss_conf 9999999999999999999987730246-878543442-11111-001333443089999988520547863215---70
Q gi|254780387|r 86 KAMFLFFVFSMFALVIGLIVGNIAKPGI-GMNVDLKSL-NTESI-AHIKSSHAKSFIGFMQDMIPDTALSALTSG---NI 159 (426)
Q Consensus 86 kti~~~l~tt~iA~~igl~~~~~~~PG~-g~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~liP~Nif~a~a~g---ni 159 (426)
-++.+.++|+.+|+.+|+..++.+.--. +......+. ..+.. .+.+.....++.+.+.+++|+|||.+++.- ++
T Consensus 108 l~i~~ll~ttaIAA~iGi~~~~~fgLtA~~l~~G~~e~a~~~~i~~~~~~~~~~tipq~ilslIP~NpF~dlTGa~~tSi 187 (458)
T COG1823 108 LTIGTLLFTTAIAALIGILVALLFGLTAEGLVQGDAETARISEIQTYVGKVADLTIPQLILSLIPKNPFADLTGANPTSI 187 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHCCCCCCE
T ss_conf 99999999999999999999998167689886273888889999988736664113799998658992367636896665
Q ss_pred HHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5799999999999521564----302489899999999999999865453337889999998510740024689999999
Q gi|254780387|r 160 LQTLIVALLFGISLSLVGE----KSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCL 235 (426)
Q Consensus 160 L~iivfai~~GiA~~~~~~----k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~ 235 (426)
.++++|+.+.|+|..+.++ +++.+.++.+.++.++|++++.||+++|+||+|+|++..++++++.+..++.|+...
T Consensus 188 IaVVIFa~~lGiAalk~~k~~~~~ge~~~~~I~t~~~ivM~lV~~VirLTPYgV~AlMtkv~ats~~~~I~~Lg~FivAs 267 (458)
T COG1823 188 IAVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLALMTKVVATSNLEDIIKLGSFIVAS 267 (458)
T ss_pred EEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 63059999999999986001667676999999999999999999999716199999999998525699999987699999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 999988779999999963286603443200014677764214310079999999-8448997584467677775337521
Q gi|254780387|r 236 YATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKM-EEAGCHRSIVSMVVPTGYSFNLDGS 314 (426)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~-e~~gv~~~i~~fviPlG~tinm~G~ 314 (426)
|.+ .+..++++.++..+.|.||.|++|+..|.+.+||++|||+||+|.+.|+. +|+|+|+.++||+...|+|++.|||
T Consensus 268 Y~A-i~~MFvvH~iLL~~~g~NPi~Y~Kkv~PvL~FAFtSRSSAatiPlnietQt~klGV~~~IANfaASFG~tiGQNGC 346 (458)
T COG1823 268 YIA-IFIMFVVHGILLALNGVNPIKYFKKVWPVLTFAFTSRSSAATIPLNIETQTRKLGVPEGIANFAASFGATIGQNGC 346 (458)
T ss_pred HHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 999-9999999999999808878999998867876310334533557742799887629918888889874420256771
Q ss_pred H-HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5-8999999999985098-7998999999999999962136843258999999998615998999999997777643567
Q gi|254780387|r 315 N-IYITLATLFISQATNV-PLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSECR 392 (426)
Q Consensus 315 a-~~~~~~~iFia~~~gi-~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~~i~ll~~id~~~D~~r 392 (426)
| +|+++.++++|..-|+ |+++...+.++.+.+++|+|.|||+||+......++.. +|+|++.+++++++||+.||.|
T Consensus 347 AGiyPAmlAvMVAPtvgi~p~d~~fi~tli~vv~IsS~GvAGVGGGATfAAliVLs~-l~lPv~lvgLlIsIEPlIDMgR 425 (458)
T COG1823 347 AGIYPAMLAVMVAPTVGINPLDPHFIATLIGVVTISSFGVAGVGGGATFAALIVLSA-LGLPVALVGLLISIEPLIDMGR 425 (458)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 243199999986433588988889999999999985133166784288999999972-6973999989985126776526
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 899876779999999988251048988876378
Q gi|254780387|r 393 SVTNFIGNAVMTVVVSRWEKKLDPKLFNKYIGI 425 (426)
Q Consensus 393 T~~NV~gd~~~a~iv~~~~~~~d~~~~~~~~~~ 425 (426)
|++||.|.+....+.+|+.|++|+|.||.+.++
T Consensus 426 TAlNV~GSM~aG~iT~k~lk~~d~~~~~~~~~~ 458 (458)
T COG1823 426 TALNVSGSMTAGTITSKLLKQTDKEIYNSEDDA 458 (458)
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 763665415787888999886143444332359
No 9
>COG3633 SstT Na+/serine symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=366.57 Aligned_cols=389 Identities=22% Similarity=0.318 Sum_probs=323.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 58999999999999999999999577899987666999999999999999999999961343024677799999999999
Q gi|254780387|r 14 PLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFV 93 (426)
Q Consensus 14 ~~~~~L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~l~ 93 (426)
-..-+|..||.+|+++|+.+|.+.|+.+...+.+|++|.+.||.+.+-|||.-+..+|++-+..++. + .+-.+..|++
T Consensus 11 ~~~gsLv~qI~iGl~lGi~~a~~s~~~a~~vgllG~lFv~aLkAvAPvLVf~LV~asIan~k~gq~t-~-ir~IivLYl~ 88 (407)
T COG3633 11 LARGSLVKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVAPVLVFILVMASIANHKKGQKT-N-IRPIIVLYLL 88 (407)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CCEEEHHHHH
T ss_conf 9810079999999999999996386578786278999999998888899999999998613314524-6-5333358988
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999987730246878543442111110013334430899999885205478632157057999999999995
Q gi|254780387|r 94 FSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISL 173 (426)
Q Consensus 94 tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~~GiA~ 173 (426)
-|..|+....+.+..+ |.. ...+ .. +.....++...+-+.+.+.++ -+||+.++.+.|.++++.+++.+|+|+
T Consensus 89 GTF~Aal~AVia~f~F-P~~-lvL~--~~--~~~~spP~gi~eVl~~Ll~~~-VdNPinAl~~aNyiGiLaWaiglG~Al 161 (407)
T COG3633 89 GTFSAALVAVIASFAF-PST-LVLA--SS--AGDISPPSGIVEVLKSLLMSL-VDNPINALLNANYIGILAWAIGLGLAL 161 (407)
T ss_pred HHHHHHHHHHHHHHCC-CEE-EEEE--CC--CCCCCCCCCHHHHHHHHHHHH-HCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8889999999986017-616-9983--46--777799732999999999998-537788986177022569998776998
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 2156430248989999999999999986545333788999999851074002468999999999998877999999996-
Q gi|254780387|r 174 SLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILAR- 252 (426)
Q Consensus 174 ~~~~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~~~~~~~~~~l~~~- 252 (426)
+.. ++.-+++++++++.+.|+++|+++++|+|+|++.++++++.|++.+..+.+++.+...++++..+++.|++.+
T Consensus 162 rh~---s~~tk~~~~d~~e~vs~iV~~iI~fAP~GIfgLVasT~a~tG~~aL~gYa~LL~vLvg~Mlfva~VVNpliv~~ 238 (407)
T COG3633 162 RHA---SDTTKNLVNDLSEAVSKIVKVVIRFAPIGIFGLVASTLAETGFGALWGYAQLLAVLVGCMLFVALVVNPLIVYW 238 (407)
T ss_pred HHC---CHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 850---17689999999988887773025436740667878888860178999899999999999999999853224788
Q ss_pred HCCCCHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 328660344-3200014677764214310079999999844899758446767777533752158999999999985098
Q gi|254780387|r 253 FCRFSIIKL-IIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLATLFISQATNV 331 (426)
Q Consensus 253 ~~~~~p~~~-~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~~~~~~~iFia~~~gi 331 (426)
..|+||+.. +++.+|.-.+||.||||+|.+|++|+-|||+|.+|+..+..+|||+|+||.|+|+..++..+-..+..|+
T Consensus 239 kiRrNPyPLV~~ClReSg~tAFFTRSSAANIPVNm~Lc~kl~ldedtYsvSIPLGAtINMaGAAITItvLtLaAvhT~gi 318 (407)
T COG3633 239 KIRRNPYPLVLTCLRESGVTAFFTRSSAANIPVNMALCKKLGLDEDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGI 318 (407)
T ss_pred EECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHCCC
T ss_conf 75278866268876521707998524345786009999872998542157600576110454125679999988886286
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79989999999999999621368432589999999986159989999999977----77643567899876779999999
Q gi|254780387|r 332 PLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGV----DRFMSECRSVTNFIGNAVMTVVV 407 (426)
Q Consensus 332 ~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~~~i~ll~~i----d~~~D~~rT~~NV~gd~~~a~iv 407 (426)
+.++.+-+++-+++.+.++|++||.||++......|+.+ |+|-+.-.-.+++ .-+.|.++|++|-..|...++.+
T Consensus 319 ~vd~~tAlLLSvVA~~~ACGASGVAGGSLLLIPlACslF-gI~~DvAmqvV~VGFIIgvlQDS~ETALNSSTDVLFTAa~ 397 (407)
T COG3633 319 PVDLPTALLLSVVASVCACGASGVAGGSLLLIPLACSLF-GISNDVAMQVVAVGFIIGVLQDSAETALNSSTDVLFTAAA 397 (407)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHC-CCCHHHHHHHHEEEEEEEEEHHHHHHHHCCCCHHHHHHHH
T ss_conf 015889999999999983355666686156446566663-9966888876401068888633577765566127999987
Q ss_pred HHHHCCCC
Q ss_conf 98825104
Q gi|254780387|r 408 SRWEKKLD 415 (426)
Q Consensus 408 ~~~~~~~d 415 (426)
++.|++..
T Consensus 398 c~ae~~k~ 405 (407)
T COG3633 398 CQAEDRKL 405 (407)
T ss_pred HHHHHHHH
T ss_conf 46677632
No 10
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=95.43 E-value=0.16 Score=27.00 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHHHH-HHHHHH
Q ss_conf 002635899999999999999999999957789998766699999999999-999999999996134302467-779999
Q gi|254780387|r 9 GDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLI-TPVIFLTVSTGIARMKDMKVI-GQIFWK 86 (426)
Q Consensus 9 ~~~~~~~~~~L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~v-iPLVf~sIi~gIa~l~~~~~~-gki~~k 86 (426)
-..+|+++.++.+.+++|+++|+.++-........=+.+. -+++++=... ..-+.. =+.+..+.++.++. +|....
T Consensus 3 ~~~~~~L~~~iligivlGi~~G~~~p~~~~~l~~iG~lFl-~lLkmiVvPLIf~sii~-gIa~l~~~~~lGrig~~~l~~ 80 (428)
T PRK01663 3 KPLYKSLYFQVLVAIIIGILLGHFYPELGVQMKPLGDGFI-KLIKMIIAPIIFCTVVT-GIAGMEDMKKVGRVGGKALLY 80 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHH
T ss_conf 7289999999999999999999971888888756799999-99999999999999999-998370505330689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998
Q gi|254780387|r 87 AMFLFFVFSMFALVIGLIVG 106 (426)
Q Consensus 87 ti~~~l~tt~iA~~igl~~~ 106 (426)
.+....+...++..++....
T Consensus 81 ~~~tt~iA~~igl~~~~~i~ 100 (428)
T PRK01663 81 FEIVSTIALIIGLIVANVVQ 100 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999963
No 11
>TIGR00832 acr3 arsenical-resistance protein; InterPro: IPR004706 The arsenical-resistance protein ACR3 is an integral membrane protein involved in resistance to arsenic compounds. This family also includes several bacterial hypothetical proteins.; GO: 0016021 integral to membrane.
Probab=93.62 E-value=0.43 Score=24.48 Aligned_cols=241 Identities=18% Similarity=0.184 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 89999999999999999999995778999876669---------999999999999999999999613430246777999
Q gi|254780387|r 15 LYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGD---------IFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFW 85 (426)
Q Consensus 15 ~~~~L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~---------lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~ 85 (426)
+=|-|..||.++++.|+.+|.++|+...+++-+|+ +=+.++=|+-+||+ +. |=++.+|.+.
T Consensus 4 leryLt~Wi~Lai~~Gv~LG~~~P~~~~~~~~lGhP~~~~vsiPiAi~l~~MmYP~l~---------Kv-~y~~~~~V~~ 73 (375)
T TIGR00832 4 LERYLTLWIFLAIVIGVGLGVLFPSVFQALAALGHPEVATVSIPIAIGLILMMYPPLA---------KV-DYSALGKVFK 73 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC---------EE-CHHHHHHHHH
T ss_conf 4478899999999999999898678999986217875365008999999998600321---------00-2888988765
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHH-HHHHCCCHH
Q ss_conf 9---999999999999999999987730246878543442111110013334430899999885205478-632157057
Q gi|254780387|r 86 K---AMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALS-ALTSGNILQ 161 (426)
Q Consensus 86 k---ti~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~-a~a~gniL~ 161 (426)
+ .=... ++|..-.+++|- ... -+.-.+..-.|..-.. .-+++-+.|
T Consensus 74 ~syi~K~L~---------lsL~~NW~igP~-----~M~----------------~LA~~fL~~~~e~l~~a~~a~~Y~~G 123 (375)
T TIGR00832 74 DSYIPKGLI---------LSLVLNWIIGPF-----LMF----------------ILAWLFLRDLFEPLLDAEQAESYIAG 123 (375)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHH-----HHH----------------HHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 202368899---------999999998899-----999----------------99999996358788886235578899
Q ss_pred HHHHHHHHHHHHHCC-C--CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHH
Q ss_conf 999999999995215-6--4302-489899999999999999865453337889999998510740------02468999
Q gi|254780387|r 162 TLIVALLFGISLSLV-G--EKSD-TIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLS------SISNLIFL 231 (426)
Q Consensus 162 iivfai~~GiA~~~~-~--~k~~-~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~------~l~~l~~~ 231 (426)
+|...+.==+|+.-+ + .++| ..--..-++|+.+|-. -++|++.+-+-.......|.| ....+.+=
T Consensus 124 lIL~G~ArCiAMV~vWn~L~~GD~~~~~vlVa~Nsl~q~~-----~yA~l~~~~l~v~~~d~lG~e~~~~~V~~~~~a~S 198 (375)
T TIGR00832 124 LILLGLARCIAMVLVWNQLAKGDPEYTLVLVAVNSLFQVF-----LYAPLAWLLLTVSPIDWLGLEGTVVTVPWETIAKS 198 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCHHHHCCCCEEEECCHHHHHHH
T ss_conf 9999854567666655332589721125999999999999-----99999999998616234055510265239999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HH-CCCCHHHHHHHHHH
Q ss_conf 9999999988779999999963286-603-443200014677764214310079999999-84-48997584467677
Q gi|254780387|r 232 VFCLYATSAFFILGVLGILARFCRF-SII-KLIIFLKEEVLLVLSTSSSESALPGLMKKM-EE-AGCHRSIVSMVVPT 305 (426)
Q Consensus 232 v~~~~~~~~~~~~~~~~l~~~~~~~-~p~-~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~-e~-~gv~~~i~~fviPl 305 (426)
++.+.+.=++......-...+..|+ ++- +|.++++|-.++|| ..|+=+..--- |. ..-|-++....+||
T Consensus 199 V~iYlgiPl~aG~~~R~~~~~~kG~~~ye~~f~~~i~P~~~~aL-----L~T~vllF~~kG~~I~~~Pl~v~liAiPL 271 (375)
T TIGR00832 199 VLIYLGIPLIAGILTRYILLKRKGREWYEKVFLPKISPIALIAL-----LFTIVLLFALKGETIIELPLDVLLIAIPL 271 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998606801355667404564899999-----99999999858989987289999999999
No 12
>pfam03812 KdgT 2-keto-3-deoxygluconate permease.
Probab=88.71 E-value=1.3 Score=21.71 Aligned_cols=87 Identities=21% Similarity=0.257 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999577899987666999999999999999999999961343024677799999999999999999
Q gi|254780387|r 20 YIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFAL 99 (426)
Q Consensus 20 ~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~l~tt~iA~ 99 (426)
.--+++=+++|.++.-++|+...+++.+-+.+.+ =..|++-.-..+.=+++ +.|+.++..+|.....+.-..+++
T Consensus 12 GG~MlVPLllgalinTf~P~~l~~~G~fT~al~~----G~~~il~~~l~~~Ga~I-~~k~~~~~l~kg~~ll~~K~~i~~ 86 (314)
T pfam03812 12 GGMMLVPLFLGALCNTFAPGAGKYFGSFTNGLIT----GTLPILAVWFFCMGASI-DFRATGTILRKSGTLVVTKIAFAW 86 (314)
T ss_pred CCEEHHHHHHHHHHHHHCCCHHHHCCCHHHHHHC----CCHHHHHHHHHHHCCEE-EHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 7023999999999986076266635726788875----80989999999936753-531033667850568889999999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999877302
Q gi|254780387|r 100 VIGLIVGNIAKP 111 (426)
Q Consensus 100 ~igl~~~~~~~P 111 (426)
.+|+.++.++.+
T Consensus 87 ~lg~~~~~~~g~ 98 (314)
T pfam03812 87 VVAVIAAQFIPD 98 (314)
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998195
No 13
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=86.78 E-value=1.9 Score=20.78 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995778999876669999999999999999999999613430246777999999999999999999
Q gi|254780387|r 21 IQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALV 100 (426)
Q Consensus 21 ~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~l~tt~iA~~ 100 (426)
--|++=+++|.+++-++|+.... |.-+-.+.|-=..|++-.-....=+++ +.|+.++..+|.....+.-..+++.
T Consensus 10 G~MlVPLllgalinTf~P~~l~i----GgfTtalf~~Ga~~il~~~l~~~Ga~I-~lk~~~~~l~kg~~ll~~K~~i~~~ 84 (308)
T PRK12460 10 GMMVVPLVIGALINTFAPQALEI----GGFTTALFKNGAAPLLGAFLLCMGAGI-SVKAAPQALLQGGTITLTKLLVAIG 84 (308)
T ss_pred CEEHHHHHHHHHHHHCCCCCHHH----CCHHHHHHHCCHHHHHHHHHHHHCCEE-EEHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 01299999999997327862041----663178786585989999999917754-5021308789899999999999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999877302
Q gi|254780387|r 101 IGLIVGNIAKP 111 (426)
Q Consensus 101 igl~~~~~~~P 111 (426)
+|+.++.++.|
T Consensus 85 lg~~~~~~~g~ 95 (308)
T PRK12460 85 IGLGVEHFFGA 95 (308)
T ss_pred HHHHHHHHCCC
T ss_conf 99999998296
No 14
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.03 E-value=8.1 Score=17.16 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5899999999999999999999957
Q gi|254780387|r 14 PLYKILYIQVLVAIFSGMALGHFVP 38 (426)
Q Consensus 14 ~~~~~L~~~ilig~v~Gi~~G~~~~ 38 (426)
.|+.-.|....+|+++|+++|.++-
T Consensus 2 nwt~~~W~~a~igLvvGi~IG~li~ 26 (138)
T COG3105 2 NWTFMTWEYALIGLVVGIIIGALIA 26 (138)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5059999999999999999999999
No 15
>TIGR02170 thyX thymidylate synthase, flavin-dependent; InterPro: IPR003669 Thymidylate (dTMP) is an essential DNA precursor. There are two pathways for thymidylate synthesis, each utilising a different thymidylate synthase enzyme: ThyA (2.1.1.45 from EC) and ThyX (2.1.1.148 from EC) . Both enzymes convert dUMP to dTMP, but there is no sequence identity between the two enzymes, and their mechanisms of action differ . Only ThyX uses FAD as cofactor. This entry represents the flavin-dependent enzyme ThyX, which is a homotetramer bound to four FAD molecules. Under oxygen-limiting conditions, thyX can complement a thyA mutation .; GO: 0050660 FAD binding, 0050797 thymidylate synthase (FAD) activity, 0006231 dTMP biosynthetic process.
Probab=53.95 E-value=3.6 Score=19.20 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 8997584467677775337521
Q gi|254780387|r 293 GCHRSIVSMVVPTGYSFNLDGS 314 (426)
Q Consensus 293 gv~~~i~~fviPlG~tinm~G~ 314 (426)
|++++.|++|+|+|+-.++-=+
T Consensus 189 G~a~E~AR~vLP~~~~t~~~~t 210 (259)
T TIGR02170 189 GIAREDARFVLPNALYTNIVVT 210 (259)
T ss_pred CCCHHHHHHHCCCCCCEEEEEE
T ss_conf 8816878764556871679988
No 16
>PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional
Probab=48.29 E-value=17 Score=15.36 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995
Q gi|254780387|r 21 IQVLVAIFSGMALGHFV 37 (426)
Q Consensus 21 ~~ilig~v~Gi~~G~~~ 37 (426)
...++|+++|+++|+++
T Consensus 4 ~~ali~lvvGiiIG~~~ 20 (134)
T PRK11677 4 EYALIGLVVGIIIGAVA 20 (134)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 17
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=45.18 E-value=19 Score=15.07 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999957789998766-699999999999999999999996134302467779999999999999999
Q gi|254780387|r 20 YIQVLVAIFSGMALGHFVPQIGVQMQPL-GDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFA 98 (426)
Q Consensus 20 ~~~ilig~v~Gi~~G~~~~~~~~~l~~~-G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~l~tt~iA 98 (426)
.--+++-+.+|.++.-++|+...+++-+ ..+|.+-- .|++-.-....=+++ +.|+.++..+|....+..-..++
T Consensus 14 Gg~mvVPlllgalinTf~P~~l~~iG~FT~alf~~G~----~~ii~~~l~~~Ga~I-~~k~~~~~l~kg~~l~~~K~~i~ 88 (305)
T PRK05274 14 GGMMLVPLLLGALVNTFAPGALKYIGSFTTALFKTGA----SPILAVFLFCMGASI-NLRAAGVVLKKGGTLLATKIAVA 88 (305)
T ss_pred CCEEHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHCCH----HHHHHHHHHHHCCEE-EECCCCHHHHHHHHHHHHHHHHH
T ss_conf 7124999999999961275055543643088885683----889999999927864-50014266775144667999999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999877302
Q gi|254780387|r 99 LVIGLIVGNIAKP 111 (426)
Q Consensus 99 ~~igl~~~~~~~P 111 (426)
+.+|+.++.++.+
T Consensus 89 ~~lg~~~~~~~g~ 101 (305)
T PRK05274 89 ALLGLIAGKLLGE 101 (305)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999998087
No 18
>pfam07271 Cytadhesin_P30 Cytadhesin P30/P32. This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localized on the tip organelle. It is thought that it is important in cytadherence and virulence.
Probab=45.03 E-value=19 Score=15.06 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHHHCC
Q ss_conf 7057999999999995215
Q gi|254780387|r 158 NILQTLIVALLFGISLSLV 176 (426)
Q Consensus 158 niL~iivfai~~GiA~~~~ 176 (426)
--.+..+.|+++|+++..-
T Consensus 75 ~~~G~~alaiiLGL~IGlP 93 (279)
T pfam07271 75 GGFGFSALAIILGLAIGLP 93 (279)
T ss_pred CCHHHHHHHHHHHHHCCCH
T ss_conf 4201899999987421751
No 19
>TIGR00791 gntP transporter, gluconate:H+ symporter (GntP) family; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter and GntT, a high affinity transporter .; GO: 0015128 gluconate transmembrane transporter activity, 0015725 gluconate transport, 0016020 membrane.
Probab=41.81 E-value=21 Score=14.77 Aligned_cols=186 Identities=16% Similarity=0.200 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_conf 0002635899999999-9999999999999577899------9876669999999999999999999999----------
Q gi|254780387|r 8 HGDIRPPLYKILYIQV-LVAIFSGMALGHFVPQIGV------QMQPLGDIFVKTTKMLITPVIFLTVSTG---------- 70 (426)
Q Consensus 8 ~~~~~~~~~~~L~~~i-lig~v~Gi~~G~~~~~~~~------~l~~~G~lfi~lLkm~viPLVf~sIi~g---------- 70 (426)
|++.|+.+.++....+ +.|+++|+ ..|=|.+- -+..--+.=++++|+.|+=.=-.++.+|
T Consensus 88 ~TL~~~fG~~~vq~avv~~Gli~Gl---ALFfEVg~VLLiPlvF~IA~~~~i~ll~l~iPm~AAl~v~H~fLPPhPGP~~ 164 (458)
T TIGR00791 88 LTLLAKFGKKRVQWAVVLAGLIVGL---ALFFEVGFVLLIPLVFSIAREAKISLLKLGIPMVAALSVAHGFLPPHPGPTA 164 (458)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 9999863700122576678999988---8899999999999999999995787556788899999987413796827899
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCH-HH-HHHHHHHCCCCCCCCCHHH-HHHHHH
Q ss_conf 6134302467779999999999999999999-999987730246878543-44-2111110013334430899-999885
Q gi|254780387|r 71 IARMKDMKVIGQIFWKAMFLFFVFSMFALVI-GLIVGNIAKPGIGMNVDL-KS-LNTESIAHIKSSHAKSFIG-FMQDMI 146 (426)
Q Consensus 71 Ia~l~~~~~~gki~~kti~~~l~tt~iA~~i-gl~~~~~~~PG~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~-~l~~li 146 (426)
+++--+ .+.| +++.|=++.++=+..+ |-+...+.+--.....+. .. .+-.+....++++.|++.- .+..++
T Consensus 165 iA~~~g-AD~G----~vllYG~ivaIPtvi~AGPlf~Kfl~~~~~~~p~k~G~I~~l~~~~~~~e~~mPSFG~S~~t~ll 239 (458)
T TIGR00791 165 IANEYG-ADIG----EVLLYGLIVAIPTVIIAGPLFTKFLKRIVPPKPEKEGNIASLGSEKTFSEEEMPSFGVSLFTALL 239 (458)
T ss_pred HHHHHC-CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999856-6266----89999999998899998788998874104788999986513234466772347502589999999
Q ss_pred H--------------------CCHHHHHHH--CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2--------------------054786321--5705799999999999521564302489899999999999999865
Q gi|254780387|r 147 P--------------------DTALSALTS--GNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVM 202 (426)
Q Consensus 147 P--------------------~Nif~a~a~--gniL~iivfai~~GiA~~~~~~k~~~l~~~~~~~~~v~~kii~~vi 202 (426)
| ||.+-.+.| ||-.=-.+.|+++.+-.-- -+|+++..+..|+..+.+..+-..+.
T Consensus 240 PviLM~~~TIa~~~~~k~~~~~~~~~~~~~FiGnp~~Am~IA~lvA~y~lG-~~rg~~~~~vmd~~~~ai~~IA~~LL 316 (458)
T TIGR00791 240 PVILMAVKTIAELTLPKGGLADSTAYEVVEFIGNPITAMLIAVLVAIYTLG-IRRGMPMDQVMDSCGSAIKSIAMILL 316 (458)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999874542024036999999945858999999999999964-51589988999999878988888646
No 20
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=37.45 E-value=25 Score=14.37 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999999999577899987666999999999999999999999961343
Q gi|254780387|r 21 IQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMK 75 (426)
Q Consensus 21 ~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~ 75 (426)
..+++|.++|+++|..--.-..+++.+...|++..|-+=+-++..-+-.|.-..+
T Consensus 18 ~~~~~g~~~Gl~~al~r~s~~~~l~~~~~~Y~~~~Rg~PlLvqlf~~yfgLP~~G 72 (99)
T TIGR01726 18 LSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIG 72 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999871359999999999999962079999999998435427
No 21
>TIGR00804 nupC nucleoside transporter, NupC family; InterPro: IPR008276 Nucleosides are hydrophilic molecules and require specialised transport proteins for permeation of cell membranes. There are two types of nucleoside transport processes: equilibrative bidirectional processes driven by chemical gradients and inwardly directed concentrative processes driven by an electrochemical gradient . This entry represents a family of Concentrative Nucleoside Transporter (CNT) proteins found in bacteria and eukaryotes. So far, the members found in microorganisms such as bacteria and fungi are H+ symporters, while the mammalian members are Na+ symporters. The microbial proteins include broad specificity transporters, such as the Escherichia coli NupC protein which transports all nucleosides (both ribo- and deoxyribonucleosides) except hypoxanthine and guanine nucleosides . Other proteins have higher specificity, like the Bacillus subtilis NupC transporter which is specific for pyrimidine nucleosides (cytidine and uridine and the corresponding deoxyribonucleosides). A recently characterised fungal protein, the first transporter of this type to be described in eukaryotes, exhibited transport activity for adenosine, uridine, inosine and guanosine but not cytidine, thymidine or the nucleobase hypoxanthine . The characterised mammalian proteins can be divided into three subgroups; CNT1, CNT2 and CNT3 . CNT1 preferentially transports pyrimidines and weakly transports adenosine. Several antiviral and anticancer nucleoside analogues, including AZT and dFdC are also substrates for CNT1. CNT2 selectively transports purines, and the human form has also been shown to facilitate the uptake of some antiviral compounds including ddI and ribavirin. CNT3 has a broader specificity, transporting both purines and pyrimidines. Several anticancer nucleoside analogues such as CdA, dFdC and FdU are also transported by CNT3. Substrate specificity appears to depend on a region containing transmembrane regions 7, 8 and 9. Mutation of just four residues in this region was sufficient to convert the activity of human CNT1 to that of CNT2. At least three other concentrative nucleoside transport activities have been described in mammalian cells, but the proteins responsible for these activities have not yet been identified.; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane.
Probab=36.83 E-value=26 Score=14.31 Aligned_cols=22 Identities=23% Similarity=0.307 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999877302
Q gi|254780387|r 90 LFFVFSMFALVIGLIVGNIAKP 111 (426)
Q Consensus 90 ~~l~tt~iA~~igl~~~~~~~P 111 (426)
|.+.-+..|+--|+.++.++.|
T Consensus 198 Yl~aAs~l~ap~~L~~akl~~P 219 (425)
T TIGR00804 198 YLIAASVLAAPGGLAFAKLIYP 219 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999998999999863267
No 22
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=35.15 E-value=27 Score=14.15 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 002635899999999999999999999957-78999876669999999999-9999999999996134302467779999
Q gi|254780387|r 9 GDIRPPLYKILYIQVLVAIFSGMALGHFVP-QIGVQMQPLGDIFVKTTKML-ITPVIFLTVSTGIARMKDMKVIGQIFWK 86 (426)
Q Consensus 9 ~~~~~~~~~~L~~~ilig~v~Gi~~G~~~~-~~~~~l~~~G~lfi~lLkm~-viPLVf~sIi~gIa~l~~~~~~gki~~k 86 (426)
-.+.|+|.|-..+--.+|.+.|++...-+. .|......+||+|--.|.+= ..-.-+=+...|+-=-+ -++.+|...-
T Consensus 49 ~~~tkfw~kvf~InFa~GvvTGivm~fqfg~nW~~fs~~vG~V~g~PLa~E~l~AFFlEa~FLGi~lfg-wdrv~~~~H~ 127 (457)
T COG1271 49 KRMTKFWGKVFAINFAVGVVTGIVMEFQFGTNWPGFSEYVGDVFGAPLAIEALFAFFLEATFLGIFLFG-WDRVSKKLHL 127 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-CCCCCCHHHH
T ss_conf 999999999999888875300132102146024879999999850488999999999998878530015-2656732689
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -9999999999999999999877302468
Q gi|254780387|r 87 -AMFLFFVFSMFALVIGLIVGNIAKPGIG 114 (426)
Q Consensus 87 -ti~~~l~tt~iA~~igl~~~~~~~PG~g 114 (426)
......+.+.+++..=+.+-..+|--.|
T Consensus 128 ~~t~~VAiGt~~Sa~wIl~aNsWMqtP~G 156 (457)
T COG1271 128 LSTWLVAIGTNLSAFWILAANSWMQTPVG 156 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999998778999999997564238970
No 23
>COG3329 Predicted permease [General function prediction only]
Probab=32.34 E-value=30 Score=13.88 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCC-CCCCCH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999995215-643024-89899999999999999865
Q gi|254780387|r 165 VALLFGISLSLV-GEKSDT-IRKCLEEINFPVFRMVSIVM 202 (426)
Q Consensus 165 fai~~GiA~~~~-~~k~~~-l~~~~~~~~~v~~kii~~vi 202 (426)
+.++-|+++... +|++++ +..|++.++.-...+.-..|
T Consensus 221 ~lllggl~iGlitGe~g~~vl~~F~~~lFqGvL~lflL~M 260 (372)
T COG3329 221 VLLLGGLAIGLITGEQGESVLKPFFDPLFQGVLCLFLLDM 260 (372)
T ss_pred HHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999879986210457603541223789999999999997
No 24
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=32.01 E-value=31 Score=13.85 Aligned_cols=273 Identities=18% Similarity=0.170 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH---HHH
Q ss_conf 63589999999999999999999995778999876669999999999999999999999613430246777999---999
Q gi|254780387|r 12 RPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFW---KAM 88 (426)
Q Consensus 12 ~~~~~~~L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~---kti 88 (426)
.+.+-|.+..++.++++.|+.+|..+|+....++ ..-.+-++-.+.|.++.-+..-..++ |-++.++... ..+
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~---~~~~~~~sipiai~L~~MmYP~m~ki-~~~~~~~v~k~~k~L~ 84 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLG---KLEFGGVSIPIAIGLILMMYPPMLKI-DFEELKNVFKDPKPLI 84 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC---CCEECCEEHHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCHHHH
T ss_conf 5599988899999999999998730444331113---42047663048999999983878548-7999999972406889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999999999999877302468785434421111100133344308999998852054786321570579999999
Q gi|254780387|r 89 FLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALL 168 (426)
Q Consensus 89 ~~~l~tt~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~ 168 (426)
.......++.=.+-...+.++.| ..| +...-.++
T Consensus 85 lsL~~Nwii~P~lm~~la~~fl~---------------------------------~~p-------------ey~~GlIL 118 (342)
T COG0798 85 LSLFVNWIIGPLLMFALAWFFLP---------------------------------DEP-------------EYRAGLIL 118 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC---------------------------------CCH-------------HHHHHHHH
T ss_conf 99999999999999999999957---------------------------------887-------------89998799
Q ss_pred HHHH--------HHCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999--------521564302489-8999999999999998654533378899999985107400246899999999999
Q gi|254780387|r 169 FGIS--------LSLVGEKSDTIR-KCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATS 239 (426)
Q Consensus 169 ~GiA--------~~~~~~k~~~l~-~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~ 239 (426)
.|+| -... .|+++-. ...-..|..++- .-++|++-+-+-.. ..+..+ ..+.+-++.+.+.=
T Consensus 119 lglApC~aMVivw~~L-a~Gd~~~tlv~Va~n~l~qi-----v~y~~~~~~~l~v~-~~~v~~---~~i~~Sv~lyl~iP 188 (342)
T COG0798 119 LGLAPCIAMVIVWSGL-AKGDRELTLVLVAFNSLLQI-----VLYAPLGKFFLGVI-SISVPF---WTIAKSVLLYLGIP 188 (342)
T ss_pred HHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHHHH
T ss_conf 8742168999999865-45867666699999999999-----99999999987101-145549---99999999999899
Q ss_pred HHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH-HHH-CCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 887799999999632866--0344320001467776421431007999999-984-489975844676777753375215
Q gi|254780387|r 240 AFFILGVLGILARFCRFS--IIKLIIFLKEEVLLVLSTSSSESALPGLMKK-MEE-AGCHRSIVSMVVPTGYSFNLDGSN 315 (426)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~--p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~-~e~-~gv~~~i~~fviPlG~tinm~G~a 315 (426)
++......-.+.+.-|++ ..++..+..|-.+.++=. |+=+..-. .|. .+-|.++...++|+ -
T Consensus 189 li~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~-----TivliF~~qg~~Iv~~p~~i~liAIpl---------~ 254 (342)
T COG0798 189 LIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLL-----TIVLIFAFQGEQIVEQPLDILLIAIPL---------L 254 (342)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH-----HHHHHHHHHHHHHHHCHHHHHHHHHHH---------H
T ss_conf 99999999999996262378998886057379999999-----999999975899983869999999999---------9
Q ss_pred HHHHH---HHHHHHHHCCCCCCHHHHHH--------HHHHHHHHHHCCCCCCHHHH
Q ss_conf 89999---99999985098799899999--------99999999621368432589
Q gi|254780387|r 316 IYITL---ATLFISQATNVPLSLTDQLS--------LLLIAMVSSKGAAGVTGSAF 360 (426)
Q Consensus 316 ~~~~~---~~iFia~~~gi~l~~~~~~~--------~~~~~~i~s~g~agvPg~~~ 360 (426)
+|+.. -..|++...|.+.. +... -.-+++-.+.+..|.+++..
T Consensus 255 iy~~~~~~i~~~i~k~lgl~y~--~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA 308 (342)
T COG0798 255 IYFLLMFFISYFIAKALGLPYE--DAAALVFTGASNNFELAIAVAIALFGLTSGAA 308 (342)
T ss_pred HHHHHHHHHHHHHHHHHCCCHH--HHHCEEEEECCCCHHHHHHHHHHHCCCCCCCH
T ss_conf 9999999999999998599855--43043465225518999999999647641012
No 25
>pfam03806 ABG_transport AbgT putative transporter family.
Probab=31.93 E-value=31 Score=13.84 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHH-HCCCCH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 00799999998448997584467677775-337521-58999999999985098799899999999
Q gi|254780387|r 280 SALPGLMKKMEEAGCHRSIVSMVVPTGYS-FNLDGS-NIYITLATLFISQATNVPLSLTDQLSLLL 343 (426)
Q Consensus 280 AtlP~~l~~~e~~gv~~~i~~fviPlG~t-inm~G~-a~~~~~~~iFia~~~gi~l~~~~~~~~~~ 343 (426)
.+.|+-.--...+|++|+.+...--+|-+ .|.--- .-|+.+ ++-.+|-|.-+.+.++.+...+
T Consensus 406 i~aPIfVPm~~llGisP~~tq~AyRiGDs~TNiItPl~~y~~l-il~~~~ky~~~~g~Gtl~s~ml 470 (502)
T pfam03806 406 ILAPIFVPMLMLLGYSPEFTQAAYRIGDSITNIITPLMSYFPL-VLAFAQKYDKRMGIGTLISLML 470 (502)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9988999999973999899999999716510115665568999-9999999565766888999998
No 26
>pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=31.56 E-value=31 Score=13.80 Aligned_cols=12 Identities=17% Similarity=0.653 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780387|r 25 VAIFSGMALGHF 36 (426)
Q Consensus 25 ig~v~Gi~~G~~ 36 (426)
+|+++|+++|++
T Consensus 4 i~lvvG~iiG~~ 15 (128)
T pfam06295 4 IGLIVGLIIGLI 15 (128)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 27
>TIGR01083 nth endonuclease III; InterPro: IPR005759 The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=30.06 E-value=20 Score=14.99 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHC-CCCHHHHHHHHHHHH
Q ss_conf 0079999999844-899758446767777
Q gi|254780387|r 280 SALPGLMKKMEEA-GCHRSIVSMVVPTGY 307 (426)
Q Consensus 280 AtlP~~l~~~e~~-gv~~~i~~fviPlG~ 307 (426)
+-.|-+++.+++| ||-|++||.|+-.+.
T Consensus 100 GeVP~~~~eL~~LPGVGRKTANVVL~~aF 128 (192)
T TIGR01083 100 GEVPEDREELVKLPGVGRKTANVVLNVAF 128 (192)
T ss_pred CCCCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98775537661789987114562433442
No 28
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=27.94 E-value=36 Score=13.44 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=10.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 026358999999999999999999
Q gi|254780387|r 10 DIRPPLYKILYIQVLVAIFSGMAL 33 (426)
Q Consensus 10 ~~~~~~~~~L~~~ilig~v~Gi~~ 33 (426)
+.|+|...+|...+++|.+.|+++
T Consensus 17 ~~~~ps~~~lg~l~~iG~~~Gii~ 40 (200)
T PRK10617 17 WWRTPSRLALGTLLLIGFVGGIIF 40 (200)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 975815779999999999999999
No 29
>PRK09695 glycolate transporter; Provisional
Probab=27.44 E-value=37 Score=13.38 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=17.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCC
Q ss_conf 999996134302467779999999999999---------9999999999877302
Q gi|254780387|r 66 TVSTGIARMKDMKVIGQIFWKAMFLFFVFS---------MFALVIGLIVGNIAKP 111 (426)
Q Consensus 66 sIi~gIa~l~~~~~~gki~~kti~~~l~tt---------~iA~~igl~~~~~~~P 111 (426)
.|-.++.++.+.+ |+-.-.+.|.+..- -.|+.-.+.++.-++|
T Consensus 102 ~Ir~~~~~Is~D~---rvQvliIaw~Fg~fiEGaaGFGTPvAI~aplLvaLGF~p 153 (560)
T PRK09695 102 IIRSSVISITDDQ---RLQVLLIGFSFGALLEGAAGFGAPVAITGALLVGLGFKP 153 (560)
T ss_pred HHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
T ss_conf 9999997439863---789999999999999875246760999999999859966
No 30
>pfam09546 Spore_III_AE Stage III sporulation protein AE (spore_III_AE). This represents the stage III sporulation protein AE, which is encoded in a spore formation operon spoIIIAABCDEFGH under the control of sigma G. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.74 E-value=40 Score=13.20 Aligned_cols=58 Identities=9% Similarity=0.159 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999577899987666999999999999999999999961343024677799999999999
Q gi|254780387|r 27 IFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFV 93 (426)
Q Consensus 27 ~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~l~ 93 (426)
-+...+...++.|.....+.++++ ++--+++++.....+-.+.++.++++.. +.|..+
T Consensus 24 ~i~~~l~~~lf~Ev~~~~~ll~~l--------i~lai~~avl~nl~~aF~~~~vs~iaf~-v~yl~l 81 (328)
T pfam09546 24 EIGKGLLKYLFKELLANLKLLGKL--------IILAVICALLQNLQNAFSSETVSKIAYF-VCYMVL 81 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHH
T ss_conf 999999999999999707799999--------9999999999999988645849899999-999999
No 31
>pfam03313 SDH_alpha Serine dehydratase alpha chain. L-serine dehydratase (EC:4.2.1.13) is a found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein. This enzyme catalyses the deamination of serine to form pyruvate. This enzyme is part of the gluconeogenesis pathway.
Probab=25.38 E-value=35 Score=13.56 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=24.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 146777642143100799999998448997584
Q gi|254780387|r 267 EEVLLVLSTSSSESALPGLMKKMEEAGCHRSIV 299 (426)
Q Consensus 267 ~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~ 299 (426)
-..+.+-.|+-|.+++|..+-..|+++.+++.-
T Consensus 98 g~~ivaaptaGS~gilP~vl~a~e~~~~~~e~l 130 (269)
T pfam03313 98 GGRIVAAPTAGSAGILPAVLYALEELGASEEKL 130 (269)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 994401068737776199999998408999999
No 32
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=25.34 E-value=41 Score=13.16 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=16.4
Q ss_pred CHHHHHHHHHH-CC-CCHHHHHHHHHHHHH
Q ss_conf 07999999984-48-997584467677775
Q gi|254780387|r 281 ALPGLMKKMEE-AG-CHRSIVSMVVPTGYS 308 (426)
Q Consensus 281 tlP~~l~~~e~-~g-v~~~i~~fviPlG~t 308 (426)
.||+.+|+.|| +. ||+++.+=..-||+|
T Consensus 150 ~LP~iirtTeEal~~VP~~~Reas~ALGa~ 179 (302)
T TIGR00974 150 ILPVIIRTTEEALKAVPKDLREASLALGAT 179 (302)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 999999998999972478888999972600
No 33
>pfam03672 UPF0154 Uncharacterized protein family (UPF0154). This family contains a set of short bacterial proteins of unknown function.
Probab=25.17 E-value=41 Score=13.14 Aligned_cols=16 Identities=25% Similarity=0.791 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999995
Q gi|254780387|r 22 QVLVAIFSGMALGHFV 37 (426)
Q Consensus 22 ~ilig~v~Gi~~G~~~ 37 (426)
.++++++.|.+.|+|+
T Consensus 2 ~iil~ll~G~~~Gff~ 17 (64)
T pfam03672 2 GIVLCLLAGFILGYFI 17 (64)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 2289999989999999
No 34
>pfam03605 DcuA_DcuB Anaerobic c4-dicarboxylate membrane transporter.
Probab=25.05 E-value=41 Score=13.13 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999961343
Q gi|254780387|r 62 VIFLTVSTGIARMK 75 (426)
Q Consensus 62 LVf~sIi~gIa~l~ 75 (426)
|+..+++.+++-|+
T Consensus 48 LII~aVI~A~a~lQ 61 (364)
T pfam03605 48 LIIMAVIAAAAAMQ 61 (364)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 35
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=24.52 E-value=42 Score=13.07 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999577899987666999999999--99999999999996--134302467779999999999999
Q gi|254780387|r 20 YIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKM--LITPVIFLTVSTGI--ARMKDMKVIGQIFWKAMFLFFVFS 95 (426)
Q Consensus 20 ~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLkm--~viPLVf~sIi~gI--a~l~~~~~~gki~~kti~~~l~tt 95 (426)
..++++++..-++.|.++...+..-+..-++++..+.- .|+-+=|+.++.-+ .... |-+|.-...-|++.|
T Consensus 15 ~gRm~~ai~iSi~~~~~lAy~A~Ksk~~E~i~ip~ldVlqSVPVlgFfpi~l~~Fv~lfp-----G~lGvElAa~FlvFT 89 (523)
T COG4986 15 AGRMLLAILISILTGWFLAYAAIKSKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLFP-----GPLGVELAADFLVFT 89 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCC-----CCHHHHHHHHHHHHH
T ss_conf 999999999999999999999985205676130499887408512010535544434347-----500389999999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999998773
Q gi|254780387|r 96 MFALVIGLIVGNIA 109 (426)
Q Consensus 96 ~iA~~igl~~~~~~ 109 (426)
..+=-+-......+
T Consensus 90 s~aWNi~fs~YQsF 103 (523)
T COG4986 90 SVAWNIWFSEYQSF 103 (523)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
No 36
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=22.86 E-value=46 Score=12.88 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
Q ss_conf 5705799999999999521564302489899999999999999865453337889999998510---7400246899999
Q gi|254780387|r 157 GNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKY---GLSSISNLIFLVF 233 (426)
Q Consensus 157 gniL~iivfai~~GiA~~~~~~k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~---g~~~l~~l~~~v~ 233 (426)
...+++.+|-.++..-....-.-+.|+.+.+|...+.+..-+++.+. -.++..++....+.- |...+....-++.
T Consensus 270 h~~lG~pifl~vm~l~F~~~f~~g~pl~dlid~~f~~l~~~v~~~l~--~~~i~~~l~~~~~dGii~GvgsVl~f~P~I~ 347 (653)
T COG0370 270 HPVLGLPIFLLVMFLMFQLTFTIGGPLSDLIDGGFGALIEWVAQILP--NLDIPSLLGSFLADGIIGGVGAVLVFLPQIF 347 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHCCCEEECHHHHHHHHHHHH
T ss_conf 52877999999999999999997032089999899999999985246--5326889998711537641113554887999
Q ss_pred HHHHHHHHHHH-HHHHHH-------HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHCCCCHHHHHHHHH
Q ss_conf 99999988779-999999-------963286603443200014677764214310079999999-844899758446767
Q gi|254780387|r 234 CLYATSAFFIL-GVLGIL-------ARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKM-EEAGCHRSIVSMVVP 304 (426)
Q Consensus 234 ~~~~~~~~~~~-~~~~l~-------~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~-e~~gv~~~i~~fviP 304 (426)
+.|+...++-- ++++-. ....|.+.+.| =|++++|+|+ -|..|.+- -+..-+|-++-+++|
T Consensus 348 ilfl~is~LEdSGYmaRaAflmDrlm~~~GL~Gkaf-----IPLilGFGCn-----VPaImaTRtle~~reRllt~lv~p 417 (653)
T COG0370 348 ILFLFLSLLEDSGYMARAAFLMDRLMRKFGLSGKAF-----IPLILGFGCN-----VPAIMATRTLETERERLLTILVIP 417 (653)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCH-----HHHHHCCCCC-----HHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999721879999999999999859997403-----6677615885-----499998877446057889999860
Q ss_pred HH
Q ss_conf 77
Q gi|254780387|r 305 TG 306 (426)
Q Consensus 305 lG 306 (426)
+.
T Consensus 418 fm 419 (653)
T COG0370 418 FM 419 (653)
T ss_pred CC
T ss_conf 36
No 37
>PRK00523 hypothetical protein; Provisional
Probab=20.83 E-value=50 Score=12.63 Aligned_cols=17 Identities=24% Similarity=0.553 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995
Q gi|254780387|r 21 IQVLVAIFSGMALGHFV 37 (426)
Q Consensus 21 ~~ilig~v~Gi~~G~~~ 37 (426)
+.+++++++|.+.|+|.
T Consensus 9 lgiil~li~G~~~Gff~ 25 (73)
T PRK00523 9 LGIPLSLIVGGIIGYFV 25 (73)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999
No 38
>TIGR00653 GlnA glutamine synthetase, type I; InterPro: IPR004809 Glutamine synthetase type I (or glutamate-ammonia ligase) has a dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. Escherichia coli, Synechocystis sp. (strain PCC 6803) , Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon S. acidocaldarius differs from that in E. coli in that it is not regulated by adenylation. ; GO: 0004356 glutamate-ammonia ligase activity, 0009399 nitrogen fixation, 0005737 cytoplasm.
Probab=20.71 E-value=51 Score=12.62 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-C--CCHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHH--HHH--HCCCCHH
Q ss_conf 6899999999999887799999999632-8--660344320001467776421431007--99999--998--4489975
Q gi|254780387|r 227 NLIFLVFCLYATSAFFILGVLGILARFC-R--FSIIKLIIFLKEEVLLVLSTSSSESAL--PGLMK--KME--EAGCHRS 297 (426)
Q Consensus 227 ~l~~~v~~~~~~~~~~~~~~~~l~~~~~-~--~~p~~~~~~~~~~~~~Af~T~SS~Atl--P~~l~--~~e--~~gv~~~ 297 (426)
.|.....-++++.+=|.= -+..+| + =||.|..=..=.|..+|.|-+.-+|.+ |...+ .+. +.+.|+.
T Consensus 304 GLSe~ALyyIGGiLkHA~----AL~A~tNPTvNSYKRLVPGYEAPv~lays~~NRSA~iRIP~~~~n~kA~R~E~R~PDP 379 (486)
T TIGR00653 304 GLSETALYYIGGILKHAK----ALAAFTNPTVNSYKRLVPGYEAPVYLAYSARNRSALIRIPASRGNPKATRIEVRFPDP 379 (486)
T ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCEECCCCEEEEEEECCCC
T ss_conf 435888887520877778----8889765660552236886121023021677875258740164088336998707887
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC--CCHHH
Q ss_conf 84467677775337521589999999999850987--99899
Q gi|254780387|r 298 IVSMVVPTGYSFNLDGSNIYITLATLFISQATNVP--LSLTD 337 (426)
Q Consensus 298 i~~fviPlG~tinm~G~a~~~~~~~iFia~~~gi~--l~~~~ 337 (426)
.+| =|.++||+++|.+=||- +++++
T Consensus 380 s~N---------------PYLAFAA~LmAGLDGIKnKI~Pge 406 (486)
T TIGR00653 380 SAN---------------PYLAFAALLMAGLDGIKNKIDPGE 406 (486)
T ss_pred CCC---------------HHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 656---------------789999999862012001458787
No 39
>pfam11070 DUF2871 Protein of unknown function (DUF2871). This family of proteins has no known function.
Probab=20.40 E-value=51 Score=12.58 Aligned_cols=76 Identities=11% Similarity=0.172 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 2635899999999999999999999957789998766699999999--99999999999999613430246777999999
Q gi|254780387|r 11 IRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTK--MLITPVIFLTVSTGIARMKDMKVIGQIFWKAM 88 (426)
Q Consensus 11 ~~~~~~~~L~~~ilig~v~Gi~~G~~~~~~~~~l~~~G~lfi~lLk--m~viPLVf~sIi~gIa~l~~~~~~gki~~kti 88 (426)
|||-++.++. -.++|.+-|.+.+|+..+-++-|+--++..- ..++=.+++-++....+..+..+.++ ..+..
T Consensus 1 MKkl~~~a~~-----Y~ilgl~~GvFYREfTK~~~f~G~T~L~~vHtH~lvLG~~~fLi~lll~k~f~l~~~k~-f~~f~ 74 (131)
T pfam11070 1 MKKLYNASFF-----YLILGLLSGVFYREFTKANGFTGRTQLSLVHTHLLVLGFFFFLIVLLLEKVFKLSKNKL-FNKFF 74 (131)
T ss_pred CHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHH
T ss_conf 9579999999-----99999996799999998838877241167889999999999999999999850130545-05256
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780387|r 89 FLFF 92 (426)
Q Consensus 89 ~~~l 92 (426)
..|-
T Consensus 75 ~vYn 78 (131)
T pfam11070 75 VVYN 78 (131)
T ss_pred HHHH
T ss_conf 6343
Done!