HHSEARCH alignment of GI: 254780387 and SCOP domain: d2nwwa1

Alignment
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00  E-value=0  Score=643.32  Aligned_cols=383  Identities=27%  Similarity=0.536  Sum_probs=355.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999995778------999876669999999999999999999999613430246777999999999999
Q gi|254780387|r   21 IQVLVAIFSGMALGHFVPQI------GVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVF   94 (426)
Q Consensus        21 ~~ilig~v~Gi~~G~~~~~~------~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~l~t   94 (426)
                      .|+++|+++|+++|.++++.      ..|++++||+|+|++||+++|+||+|++.|++++++ ++.||++.|++.||+.+
T Consensus         3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~-~~~gkl~~~ti~~~l~t   81 (405)
T d2nwwa1           3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISP-ARLGRVGVKIVVYYLLT   81 (405)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHCCHHHHHHHHHHHHH
T ss_conf             89999999999999997222212789999998999999999999999999999999974550-10020899999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999877302468785434421111100133344308999998852054786321570579999999999952
Q gi|254780387|r   95 SMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLS  174 (426)
Q Consensus        95 t~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~~GiA~~  174 (426)
                      |.+|+.+|+.+++.++||.+.+.+...      .+.+..+..+..+++.+++|+|+|++++++|++|+++||+++|+|+.
T Consensus        82 t~iA~~igl~~~~~~~pg~~~~~~~~~------~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~  155 (405)
T d2nwwa1          82 SAFAVTLGIIMARLFNPGAGIHLAVGG------QQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAIT  155 (405)
T ss_dssp             HHHHHHHHHHHHHHSCSCCCCCCCCCC------CCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHH------CCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             999999999999986013332200000------00143110018999997055878999646786303567888899999


Q ss_pred             CCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1564--------30248989999999999999986545333788999999851074002468999999999998877999
Q gi|254780387|r  175 LVGE--------KSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGV  246 (426)
Q Consensus       175 ~~~~--------k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~~~~~~~~  246 (426)
                      ..++        +.+++.+++|+++++++|+++|+|+++|+|+||++++.++++|.+.+.++++|+.++|.+..++.++.
T Consensus       156 ~~~~~~~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~  235 (405)
T d2nwwa1         156 YLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLV  235 (405)
T ss_dssp             HHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             85022003456678899999999999999998988877788899999987533345555678999999999999998888


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999632866034432000146777642143100799999998448997584467677775337521589999999999
Q gi|254780387|r  247 LGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLATLFIS  326 (426)
Q Consensus       247 ~~l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~~~~~~~iFia  326 (426)
                      ++++.+++|+||++++|+++|++++||+|+||+||+|+++||+||+|+||++++|++|+|+|+||||+|+|++++++|++
T Consensus       236 ~~i~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a  315 (405)
T d2nwwa1         236 YFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIA  315 (405)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHHTTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHH
T ss_conf             89999982898488843223104212001665566178999999759993520102363021003641248999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8509879989999999999999621368432589999999986159989------9999999777764356789987677
Q gi|254780387|r  327 QATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPI------AGMTLILGVDRFMSECRSVTNFIGN  400 (426)
Q Consensus       327 ~~~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~------~~i~ll~~id~~~D~~rT~~NV~gd  400 (426)
                      |.||++++++|++.++++++++|+|++|+||+|++++..++... |+|.      |++++++++||++||+||++||+||
T Consensus       316 ~~~g~~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~-glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd  394 (405)
T d2nwwa1         316 NALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSV-GLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGD  394 (405)
T ss_dssp             HHHTCCCCSSTTHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHH-TCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             87197999899999999999999861786167999999999986-99886410565888887498550550898828776


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999882
Q gi|254780387|r  401 AVMTVVVSRWE  411 (426)
Q Consensus       401 ~~~a~iv~~~~  411 (426)
                      ++++++|+|||
T Consensus       395 ~~~a~iv~k~e  405 (405)
T d2nwwa1         395 LTGTAIVAKTE  405 (405)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHEEECCC
T ss_conf             58884133579


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Proton glutamate symport protein
superfamily: Proton glutamate symport protein
family: Proton glutamate symport protein
domain: Proton glutamate symport protein
species: Pyrococcus horikoshii [TaxId: 53953]