Query gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 426
No_of_seqs 136 out of 2650
Neff 7.2
Searched_HMMs 13730
Date Wed Jun 1 03:36:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780387.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nwwa1 f.49.1.1 (A:12-416) Pr 100.0 0 0 643.3 37.6 383 21-411 3-405 (405)
2 d1fp1d1 a.4.5.29 (D:19-128) Ch 27.9 8.3 0.00061 14.5 0.8 20 280-299 17-36 (110)
3 d1kyza1 a.4.5.29 (A:13-119) Ca 24.1 12 0.00087 13.6 1.0 23 277-299 15-37 (107)
4 d1o26a_ d.207.1.1 (A:) Thy1 ho 16.5 18 0.0013 12.5 0.6 26 290-315 139-164 (219)
5 d1whca_ a.5.2.1 (A:) UBA/UBX 3 9.8 36 0.0026 10.9 1.1 30 275-304 2-31 (64)
6 d1rxwa1 a.60.7.1 (A:220-324) F 7.6 44 0.0032 10.3 2.8 38 333-372 1-38 (105)
7 d1ul1x1 a.60.7.1 (X:218-357) F 5.2 67 0.0049 9.3 3.3 21 349-369 15-35 (140)
8 d1a77a1 a.60.7.1 (A:209-316) F 5.0 70 0.0051 9.2 2.6 37 333-370 1-37 (108)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 4.9 72 0.0052 9.1 4.0 15 23-37 10-24 (32)
10 d2yvxa3 f.57.1.1 (A:276-448) M 4.5 79 0.0058 8.9 7.8 62 3-64 65-137 (173)
No 1
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00 E-value=0 Score=643.32 Aligned_cols=383 Identities=27% Similarity=0.536 Sum_probs=355.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995778------999876669999999999999999999999613430246777999999999999
Q gi|254780387|r 21 IQVLVAIFSGMALGHFVPQI------GVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVF 94 (426)
Q Consensus 21 ~~ilig~v~Gi~~G~~~~~~------~~~l~~~G~lfi~lLkm~viPLVf~sIi~gIa~l~~~~~~gki~~kti~~~l~t 94 (426)
.|+++|+++|+++|.++++. ..|++++||+|+|++||+++|+||+|++.|++++++ ++.||++.|++.||+.+
T Consensus 3 ~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~-~~~gkl~~~ti~~~l~t 81 (405)
T d2nwwa1 3 QKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISP-ARLGRVGVKIVVYYLLT 81 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHCCHHHHHHHHHHHHH
T ss_conf 89999999999999997222212789999998999999999999999999999999974550-10020899999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999877302468785434421111100133344308999998852054786321570579999999999952
Q gi|254780387|r 95 SMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLS 174 (426)
Q Consensus 95 t~iA~~igl~~~~~~~PG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~liP~Nif~a~a~gniL~iivfai~~GiA~~ 174 (426)
|.+|+.+|+.+++.++||.+.+.+... .+.+..+..+..+++.+++|+|+|++++++|++|+++||+++|+|+.
T Consensus 82 t~iA~~igl~~~~~~~pg~~~~~~~~~------~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~ 155 (405)
T d2nwwa1 82 SAFAVTLGIIMARLFNPGAGIHLAVGG------QQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAIT 155 (405)
T ss_dssp HHHHHHHHHHHHHHSCSCCCCCCCCCC------CCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHH------CCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999986013332200000------00143110018999997055878999646786303567888899999
Q ss_pred CCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1564--------30248989999999999999986545333788999999851074002468999999999998877999
Q gi|254780387|r 175 LVGE--------KSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGV 246 (426)
Q Consensus 175 ~~~~--------k~~~l~~~~~~~~~v~~kii~~vi~laPigvf~lia~~~a~~g~~~l~~l~~~v~~~~~~~~~~~~~~ 246 (426)
..++ +.+++.+++|+++++++|+++|+|+++|+|+||++++.++++|.+.+.++++|+.++|.+..++.++.
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~ 235 (405)
T d2nwwa1 156 YLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLV 235 (405)
T ss_dssp HHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85022003456678899999999999999998988877788899999987533345555678999999999999998888
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999632866034432000146777642143100799999998448997584467677775337521589999999999
Q gi|254780387|r 247 LGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLATLFIS 326 (426)
Q Consensus 247 ~~l~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~AtlP~~l~~~e~~gv~~~i~~fviPlG~tinm~G~a~~~~~~~iFia 326 (426)
++++.+++|+||++++|+++|++++||+|+||+||+|+++||+||+|+||++++|++|+|+|+||||+|+|++++++|++
T Consensus 236 ~~i~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a 315 (405)
T d2nwwa1 236 YFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIA 315 (405)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHHTTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHH
T ss_conf 89999982898488843223104212001665566178999999759993520102363021003641248999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8509879989999999999999621368432589999999986159989------9999999777764356789987677
Q gi|254780387|r 327 QATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPI------AGMTLILGVDRFMSECRSVTNFIGN 400 (426)
Q Consensus 327 ~~~gi~l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~glP~------~~i~ll~~id~~~D~~rT~~NV~gd 400 (426)
|.||++++++|++.++++++++|+|++|+||+|++++..++... |+|. |++++++++||++||+||++||+||
T Consensus 316 ~~~g~~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~-glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd 394 (405)
T d2nwwa1 316 NALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSV-GLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGD 394 (405)
T ss_dssp HHHTCCCCSSTTHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHH-TCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 87197999899999999999999861786167999999999986-99886410565888887498550550898828776
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999882
Q gi|254780387|r 401 AVMTVVVSRWE 411 (426)
Q Consensus 401 ~~~a~iv~~~~ 411 (426)
++++++|+|||
T Consensus 395 ~~~a~iv~k~e 405 (405)
T d2nwwa1 395 LTGTAIVAKTE 405 (405)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHEEECCC
T ss_conf 58884133579
No 2
>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=27.85 E-value=8.3 Score=14.49 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHCCCCHHHH
Q ss_conf 00799999998448997584
Q gi|254780387|r 280 SALPGLMKKMEEAGCHRSIV 299 (426)
Q Consensus 280 AtlP~~l~~~e~~gv~~~i~ 299 (426)
.++|..++|+-++|+++-+.
T Consensus 17 ~v~pMaLk~AieLgI~diI~ 36 (110)
T d1fp1d1 17 LVYPAVLNAAIDLNLFEIIA 36 (110)
T ss_dssp THHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHH
T ss_conf 08989999999938799999
No 3
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=24.07 E-value=12 Score=13.60 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 43100799999998448997584
Q gi|254780387|r 277 SSESALPGLMKKMEEAGCHRSIV 299 (426)
Q Consensus 277 SS~AtlP~~l~~~e~~gv~~~i~ 299 (426)
++..++|..++|+-++|+++-+.
T Consensus 15 ~~~~v~pmaLk~AieLgI~DiI~ 37 (107)
T d1kyza1 15 ASASVLPMILKSALELDLLEIIA 37 (107)
T ss_dssp HTTTHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 97528999999999818799998
No 4
>d1o26a_ d.207.1.1 (A:) Thy1 homologue {Thermotoga maritima [TaxId: 2336]}
Probab=16.45 E-value=18 Score=12.53 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=20.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 84489975844676777753375215
Q gi|254780387|r 290 EEAGCHRSIVSMVVPTGYSFNLDGSN 315 (426)
Q Consensus 290 e~~gv~~~i~~fviPlG~tinm~G~a 315 (426)
-+.|++++.+++++|.|+..+.--++
T Consensus 139 l~~Gva~E~AR~vLP~~~~T~~~~t~ 164 (219)
T d1o26a_ 139 IESGVPREVARIVLPLNLYTRFFWTV 164 (219)
T ss_dssp HHTTCCHHHHGGGSBTTBEEEEEEEE
T ss_pred HHCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 97799706677776415545999995
No 5
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.75 E-value=36 Score=10.86 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=18.3
Q ss_pred HCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 214310079999999844899758446767
Q gi|254780387|r 275 TSSSESALPGLMKKMEEAGCHRSIVSMVVP 304 (426)
Q Consensus 275 T~SS~AtlP~~l~~~e~~gv~~~i~~fviP 304 (426)
|++|.+.=|..++.+.++|.+++.+.-.+=
T Consensus 2 ss~~s~~d~~~l~~L~~MGF~~~~a~~AL~ 31 (64)
T d1whca_ 2 SSGSSGAELTALESLIEMGFPRGRAEKALA 31 (64)
T ss_dssp CCCCCCCCCCHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 888775599999999995999999999999
No 6
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.62 E-value=44 Score=10.34 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9989999999999999621368432589999999986159
Q gi|254780387|r 333 LSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPS 372 (426)
Q Consensus 333 l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~~g 372 (426)
+|..|++-+..++. |--.+||||-|-.+..-.+..+..
T Consensus 1 lt~eq~iD~~~L~G--sDn~pGV~GIG~ktA~kli~~~gs 38 (105)
T d1rxwa1 1 LTREQLIDIAILVG--TDYNEGVKGVGVKKALNYIKTYGD 38 (105)
T ss_dssp CCHHHHHHHHHHHC--BTTBCCCTTCCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98999999999958--878889999378999999999399
No 7
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.19 E-value=67 Score=9.30 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=8.1
Q ss_pred HHCCCCCCHHHHHHHHHHHHH
Q ss_conf 621368432589999999986
Q gi|254780387|r 349 SKGAAGVTGSAFITLAATITL 369 (426)
Q Consensus 349 s~g~agvPg~~~v~~~~~~~~ 369 (426)
|-=.+||||-|..+..-.+..
T Consensus 15 sD~~pgv~gIG~ktA~kli~~ 35 (140)
T d1ul1x1 15 SDYCESIRGIGPKRAVDLIQK 35 (140)
T ss_dssp CSSSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHH
T ss_conf 778989998239999999999
No 8
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.03 E-value=70 Score=9.20 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99899999999999996213684325899999999861
Q gi|254780387|r 333 LSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLV 370 (426)
Q Consensus 333 l~~~~~~~~~~~~~i~s~g~agvPg~~~v~~~~~~~~~ 370 (426)
+|..|++-+.+++. ++.-.+||||-|-.+..-.+..+
T Consensus 1 lt~~q~IDl~iL~G-~dyn~pGV~GIGpktA~klIk~~ 37 (108)
T d1a77a1 1 ISLDDLIDIAIFMG-TDYNPGGVKGIGFKRAYELVRSG 37 (108)
T ss_dssp CCHHHHHHHHHHHC-CTTSTTCSTTCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 98899999999958-76887789991789999999983
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.92 E-value=72 Score=9.12 Aligned_cols=15 Identities=40% Similarity=0.815 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999995
Q gi|254780387|r 23 VLVAIFSGMALGHFV 37 (426)
Q Consensus 23 ilig~v~Gi~~G~~~ 37 (426)
++++++.|+.+|..+
T Consensus 10 vfialffgiavgiif 24 (32)
T d2e74e1 10 VFIALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHEE
T ss_conf 999999978863214
No 10
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.55 E-value=79 Score=8.88 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41011000263589999999999999999999995778999-----------876669999999999999999
Q gi|254780387|r 3 ESVQVHGDIRPPLYKILYIQVLVAIFSGMALGHFVPQIGVQ-----------MQPLGDIFVKTTKMLITPVIF 64 (426)
Q Consensus 3 ~~~~~~~~~~~~~~~~L~~~ilig~v~Gi~~G~~~~~~~~~-----------l~~~G~lfi~lLkm~viPLVf 64 (426)
..+....-.++.+++.+......|+..|..+|....-...| +.......+..+--..+|+++
T Consensus 65 R~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~lPlll 137 (173)
T d2yvxa3 65 RALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFLL 137 (173)
T ss_dssp HHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986034330139999999999999999999998999996144508999999999999999999999999999
Done!