RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter
DctA [Candidatus Liberibacter asiaticus str. psy62]
(426 letters)
>gnl|CDD|31492 COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production
and conversion].
Length = 415
Score = 324 bits (832), Expect = 3e-89
Identities = 179/411 (43%), Positives = 268/411 (65%), Gaps = 12/411 (2%)
Query: 12 RPPLYKILYIQVLVAIFSGMALGHFVPQIG--VQMQPLGDIFVKTTKMLITPVIFLTVST 69
+ LY+QVL+ + G+ +G F+P++G + ++PLGDIF+K KM+I P++F T+
Sbjct: 1 KKSKKLSLYLQVLIGLILGILVGLFLPELGAAIYLKPLGDIFIKLIKMIIIPLVFFTLVL 60
Query: 70 GIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAH 129
GIA + D+K +G++ K + F V + A+ IGL+V N+ +PG G+N+D +L+T + +
Sbjct: 61 GIASLGDLKKLGRLGGKTLIYFLVTTTLAIAIGLVVANVLQPGAGINIDPATLDTGAESE 120
Query: 130 IKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEK-SDTIRKCLE 188
+ S + F+ D+IP AL GN+LQ L A+LFG++L+ +GEK + E
Sbjct: 121 V------SILDFLLDIIPTNIFGALAEGNVLQILFFAILFGLALAALGEKGKPPVENLFE 174
Query: 189 EINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLG 248
++ +F++ + VMR+AP+G FG M+FT+ KYG S+ +L LV +Y F+ VLG
Sbjct: 175 SLSEAMFKVTNFVMRLAPIGVFGLMAFTVAKYGFGSLLSLGKLVLAVYLGLLLFVFVVLG 234
Query: 249 ILAR-FCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEE-AGCHRSIVSMVVPTG 306
+L + FS K + ++ E +LL STSSSE+ LP M+K E+ G +SIVS VVP G
Sbjct: 235 LLLKLLSGFSPFKFLRYISEALLLAFSTSSSEATLPVTMEKAEKSLGVPKSIVSFVVPLG 294
Query: 307 YSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAAT 366
Y+FNLDG+ IY TLA LFI+QA +PLSL QL+LLL+AM++SKGAAGV G + LAAT
Sbjct: 295 YTFNLDGTAIYQTLAALFIAQAYGIPLSLGQQLTLLLVAMLASKGAAGVPGGGLVVLAAT 354
Query: 367 ITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPK 417
++ V LP+ G+ LILG+DRF+ R+ TN G+AV TVVV++WE +
Sbjct: 355 LSSVG-LPLEGLALILGIDRFLDMARTATNVTGDAVATVVVAKWEGEEKAD 404
>gnl|CDD|144095 pfam00375, SDF, Sodium:dicarboxylate symporter family.
Length = 387
Score = 298 bits (766), Expect = 2e-81
Identities = 136/394 (34%), Positives = 235/394 (59%), Gaps = 9/394 (2%)
Query: 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMK 78
L +Q+L+ + G+ LG F P++ ++PLGDIF+ KML+ P++F ++ +GIA + D K
Sbjct: 1 LTLQILIGLVLGVLLGLFFPEVAGWLKPLGDIFINLLKMLVVPLVFFSIVSGIASLGDGK 60
Query: 79 VIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSF 138
+G++ K + F V + A +IGL+V + +PG+G+ + + ++S + S
Sbjct: 61 KLGKLGGKTLLYFLVTTAIAAIIGLLVALLFQPGVGLLISAAA------ESAQASESPSL 114
Query: 139 IGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMV 198
+ F+ ++IP +AL GN+LQ ++ A+LFGI+L+ +GEK + K LE +N + ++V
Sbjct: 115 LDFLLNIIPSNIFAALAEGNVLQVIVFAILFGIALAALGEKGKPLLKFLESLNEIIMKVV 174
Query: 199 SIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARF-CRFS 257
+ VM++AP+G F ++ T+G +GL ++ +L V +Y A + V +L +F +
Sbjct: 175 NWVMKLAPIGVFALIANTVGTFGLGTLGSLGKFVLTVYLALAIHLFVVYPLLLKFLTGLN 234
Query: 258 IIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNI 316
K + + +L ST+SS + LP ++ E+ G +SI S V+P G + N+DG+ I
Sbjct: 235 PFKFLKKILPALLTAFSTASSAATLPVTLECAEKNLGVSKSIASFVLPLGATINMDGTAI 294
Query: 317 YITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIA 376
Y+ +A +FI+QA V LSL L L+L A ++S GAAGV G + LA ++ + LP+
Sbjct: 295 YLAVAAIFIAQAYGVDLSLGQLLLLILTATLASIGAAGVPGGGLVALALVLSALG-LPVE 353
Query: 377 GMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRW 410
G+ LIL +DR + R+ N G+AV V+V++
Sbjct: 354 GIALILAIDRILDMFRTALNVTGDAVAAVIVAKL 387
>gnl|CDD|38991 KOG3787, KOG3787, KOG3787, Glutamate/aspartate and neutral amino
acid transporters [Amino acid transport and metabolism].
Length = 507
Score = 127 bits (320), Expect = 7e-30
Identities = 100/447 (22%), Positives = 195/447 (43%), Gaps = 66/447 (14%)
Query: 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPL------GDIFVKTTKMLITPVIFLTVSTGIA 72
L + + + G+ LG + + + + G++ ++ KM+I P+I ++ +G+A
Sbjct: 18 LLLLTVSGVVLGVLLGFLLRPLSLSPDEIMYISFPGELLMRMLKMMILPLIVSSLISGLA 77
Query: 73 RMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKS 132
+ D K G++ +A+ + ++ A+++G+ + I PG L E +
Sbjct: 78 SL-DAKASGRLGMRAVVYYMSTTIIAVILGIALVLIIHPGDPTKK--NELGREGLIDSNV 134
Query: 133 SHAKSFIGFMQDMIPDTALSA-------------------------------LTSG-NIL 160
S +F+ +++M P+ + A T G N+L
Sbjct: 135 STLDTFLDLIRNMFPENLVQATFQQYQTKYKPVTKASPGNATEEALPKGVPGYTDGMNVL 194
Query: 161 QTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAF---------- 210
++ ++FGI + +GEK + +N + ++VS +M +P+G
Sbjct: 195 GLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVGILFLIAGKILEM 254
Query: 211 ---GAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKE 267
G + +G Y + V F +L ++ + R + + I L +
Sbjct: 255 EDLGVTARQLGMY--------VVTVILGLFIHGFIVLPLIYFV--VTRKNPFRFIAGLLQ 304
Query: 268 EVLLVLSTSSSESALPGLMKKMEEA-GCHRSIVSMVVPTGYSFNLDGSNIYITLATLFIS 326
+ T+SS + LP K +EE G + + V+P G + N+DG+ +Y +A +FI+
Sbjct: 305 ALATAFGTASSSATLPITFKCLEENLGVDKRVTRFVLPVGATINMDGTALYEAVAAIFIA 364
Query: 327 QATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDR 386
Q NV LS +++ + A +S GAAGV + +T+ +T V LP ++LI VD
Sbjct: 365 QLNNVELSFGQIVTISITATAASIGAAGVPQAGLVTMLIVLTAV-GLPTKDISLIFAVDW 423
Query: 387 FMSECRSVTNFIGNAVMTVVVSRWEKK 413
+ R+ N +G+A+ +V KK
Sbjct: 424 LLDRLRTTVNVLGDALGAGIVEHLSKK 450
>gnl|CDD|33431 COG3633, SstT, Na+/serine symporter [Amino acid transport and
metabolism].
Length = 407
Score = 96.1 bits (239), Expect = 2e-20
Identities = 86/373 (23%), Positives = 170/373 (45%), Gaps = 19/373 (5%)
Query: 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIARMKDMK 78
L Q+L+ + G+ L P + LG +FV K + ++F+ V IA K +
Sbjct: 16 LVKQILIGLVLGILLAIISPPAAEAVGLLGTLFVGALKAVAPVLVFILVMASIANHKKGQ 75
Query: 79 VIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSF 138
+ + + + ++ F+ + ++ + A P + L S + S +
Sbjct: 76 ---KTNIRPIIVLYLLGTFSAALVAVIASFAFP---STLVLASSAGDISP--PSGIVEVL 127
Query: 139 IGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMV 198
+ ++ D ++AL + N + L A+ G++L SDT + + +++ V ++V
Sbjct: 128 KSLLMSLV-DNPINALLNANYIGILAWAIGLGLALR---HASDTTKNLVNDLSEAVSKIV 183
Query: 199 SIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARF-CRFS 257
+V+R AP+G FG ++ T+ + G ++ L+ L F L V ++ + R +
Sbjct: 184 KVVIRFAPIGIFGLVASTLAETGFGALWGYAQLLAVLVGCMLFVALVVNPLIVYWKIRRN 243
Query: 258 IIKLI-IFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNI 316
L+ L+E + T SS + +P M ++ G S+ +P G + N+ G+ I
Sbjct: 244 PYPLVLTCLRESGVTAFFTRSSAANIPVNMALCKKLGLDEDTYSVSIPLGATINMAGAAI 303
Query: 317 YITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSA--FITLAATITLVPS-- 372
IT+ TL +P+ L L L ++A V + GA+GV G + I LA ++ + +
Sbjct: 304 TITVLTLAAVHTLGIPVDLPTALLLSVVASVCACGASGVAGGSLLLIPLACSLFGISNDV 363
Query: 373 -LPIAGMTLILGV 384
+ + + I+GV
Sbjct: 364 AMQVVAVGFIIGV 376
>gnl|CDD|32008 COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General
function prediction only].
Length = 458
Score = 89.2 bits (221), Expect = 2e-18
Identities = 81/388 (20%), Positives = 170/388 (43%), Gaps = 17/388 (4%)
Query: 47 LGDIFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVG 106
+G+ +V+ +M++ P++F+++ + IA++ + +G+I + + A +IG++V
Sbjct: 69 VGNGYVRLLQMIVMPLVFISILSAIAKLDNASKLGKISLLTIGTLLFTTAIAALIGILVA 128
Query: 107 N---IAKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGN---IL 160
+ G+ + +E ++ + + +IP + LT N I+
Sbjct: 129 LLFGLTAEGLVQGDAETARISEIQTYVGKVADLTIPQLILSLIPKNPFADLTGANPTSII 188
Query: 161 QTLIVALLFGISLSLVG----EKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFT 216
+I A GI+ + EK + + ++ + V ++V +V+R+ P G M+
Sbjct: 189 AVVIFAAFLGIAALKLSKKDPEKGERFKAAIDTLQSIVMKLVRLVIRLTPYGVLALMTKV 248
Query: 217 IGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVLSTS 276
+ L I L + Y + F + V GIL + IK + + ++
Sbjct: 249 VATSNLEDIIKLGSFIVASYI-AIFIMFVVHGILLALNGVNPIKYFKKVWPVLTFAFTSR 307
Query: 277 SSESALP-GLMKKMEEAGCHRSIVSMVVPTGYSFNLDG-SNIYITLATLFIS-QATNVPL 333
SS + +P + + + G I + G + +G + IY + + ++ PL
Sbjct: 308 SSAATIPLNIETQTRKLGVPEGIANFAASFGATIGQNGCAGIYPAMLAVMVAPTVGINPL 367
Query: 334 SLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVP-SLPIAGMTLILGVDRFMSECR 392
+L+ + +SS G AGV G A T AA I L LP+A + L++ ++ + R
Sbjct: 368 DPHFIATLIGVVTISSFGVAGVGGGA--TFAALIVLSALGLPVALVGLLISIEPLIDMGR 425
Query: 393 SVTNFIGNAVMTVVVSRWEKKLDPKLFN 420
+ N G+ + S+ K+ D +++N
Sbjct: 426 TALNVSGSMTAGTITSKLLKQTDKEIYN 453
>gnl|CDD|29274 cd00222, CollagenBindB, Collagen-binding protein B domain, mediates
bacterial adherence to collagen; the primary sequence
has a non-repetitive, collagen-binding A region,
followed by the repetitive B region; the B region has
one to four 23 kDa repeat units (B1-B4). The B repeat
units have been suggested to serve as a `stalk' that
projects the A region from the bacterial surface and
thus facilitate bacterial adherence to collagen; each B
repeat unit has two domains (D1 and D2) placed
side-by-side; D1 and D2 have similar secondary structure
and exhibit a unique inverse IgG-like domain fold..
Length = 187
Score = 31.2 bits (70), Expect = 0.54
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 296 RSIVSMVVPTGYSFNLDGSNIYITLATLFI 325
S+ + V GY DG++IY T T FI
Sbjct: 157 YSVEEVTVVDGYKTTYDGNDIYNTKETEFI 186
>gnl|CDD|38871 KOG3667, KOG3667, KOG3667, STAT protein [Transcription, Signal
transduction mechanisms].
Length = 682
Score = 30.7 bits (69), Expect = 0.74
Identities = 26/122 (21%), Positives = 38/122 (31%), Gaps = 5/122 (4%)
Query: 265 LKEEVLLVLSTSSSESALPGLMK--KMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLAT 322
L + ++ + P L K++E + + FN + +N
Sbjct: 326 LVAKTRVLFTVKRLLVKNPELNYALKVKEIQDKDLLKPNTLRGSRKFNGEITN---NKVM 382
Query: 323 LFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVPSLPIAGMTLIL 382
+ + LSL I KGA VT L T V L I TL L
Sbjct: 383 MEEESNNGSLSAEFRNLSLKEIKRAERKGAESVTEELHAILFETQFTVGGLVIRLFTLSL 442
Query: 383 GV 384
V
Sbjct: 443 PV 444
>gnl|CDD|29948 cd00955, Transaldolase_like, Transaldolase-like proteins from
plants and bacteria. Transaldolase is found in the
non-oxidative branch of the pentose phosphate pathway,
that catalyze the reversible transfer of a
dihydroxyacetone group from fructose-6-phosphate to
erythrose-4-phosphate yielding sedoheptulose-7-phosphate
and glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates..
Length = 338
Score = 28.3 bits (63), Expect = 4.1
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 367 ITLVPSLPIAGMT---LILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFN 420
+TL+ SL + G++R + ++ +V + VSR + +D KL
Sbjct: 150 VTLIFSLEQYEAVAEAYLRGLERRVEGGGDLSQV--ASVASFFVSRVDTLIDKKLDA 204
>gnl|CDD|37624 KOG2413, KOG2413, KOG2413, Xaa-Pro aminopeptidase [Amino acid
transport and metabolism].
Length = 606
Score = 28.3 bits (63), Expect = 4.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 277 SSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNI 316
S + + L KK++E C +V+ + + NL GS+I
Sbjct: 173 SVDDKVDNLRKKLKEKKCDAFVVTALDEIAWLLNLRGSDI 212
>gnl|CDD|31378 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 27.1 bits (60), Expect = 10.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 201 VMRIAPLGAFGAMSFTIGKYGLSSISNL 228
V+RI GAF + GK GL IS L
Sbjct: 627 VVRIVDFGAF--VELLPGKDGLVHISQL 652
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.327 0.141 0.400
Gapped
Lambda K H
0.267 0.0845 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,904,922
Number of extensions: 268026
Number of successful extensions: 1298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1265
Number of HSP's successfully gapped: 103
Length of query: 426
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 330
Effective length of database: 4,189,273
Effective search space: 1382460090
Effective search space used: 1382460090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.3 bits)