RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter DctA [Candidatus Liberibacter asiaticus str. psy62] (426 letters) >gnl|CDD|179317 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed. Length = 428 Score = 542 bits (1400), Expect = e-155 Identities = 218/407 (53%), Positives = 307/407 (75%), Gaps = 1/407 (0%) Query: 12 RPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGI 71 + PLYK LY QVLVAI G+ LGHF P++G QM+PLGD F+K KM+I P+IF TV TGI Sbjct: 2 KKPLYKSLYFQVLVAIIIGILLGHFYPELGAQMKPLGDGFIKLIKMIIAPIIFCTVVTGI 61 Query: 72 ARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIA-HI 130 A M DMK +G++ KA+ F + S AL+IGLIV N+ +PG GMN+D +L+ +++A + Sbjct: 62 AGMGDMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQPGAGMNIDPATLDAKAVAQYA 121 Query: 131 KSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEI 190 +H + + F+ D+IP T + A SG+ILQ L+ A+LFG +L+ +GEK + +E + Sbjct: 122 AQAHEQGTVDFLMDIIPTTVVGAFASGDILQVLLFAVLFGFALARLGEKGKPVFDFIESL 181 Query: 191 NFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGIL 250 + +F +V+++M++AP+GAFGAM+FTIGKYG+ S+ L L+ C Y T F+ VLG + Sbjct: 182 SHVLFGIVNMIMKLAPIGAFGAMAFTIGKYGVGSLVQLGQLIGCFYITCILFVFVVLGAI 241 Query: 251 ARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFN 310 AR FSI K I ++KEE+L+VL TSSSESALP +M+KME+ GC +S+V +V+PTGYSFN Sbjct: 242 ARLTGFSIFKFIRYIKEELLIVLGTSSSESALPRMMEKMEKLGCKKSVVGLVIPTGYSFN 301 Query: 311 LDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLV 370 LDG++IY+T+A +FI+QATN PLS+ Q++LL + +++SKGAAGVTGS FI LAAT++ V Sbjct: 302 LDGTSIYLTMAAVFIAQATNTPLSIGHQITLLAVLLLTSKGAAGVTGSGFIVLAATLSAV 361 Query: 371 PSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPK 417 P +P+AG+ LILG+DRFMSE R++TN IGN V TVVV++WEK+LD + Sbjct: 362 PHIPVAGLALILGIDRFMSEARALTNLIGNGVATVVVAKWEKELDRE 408 >gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed. Length = 421 Score = 458 bits (1181), Expect = e-129 Identities = 184/404 (45%), Positives = 280/404 (69%), Gaps = 2/404 (0%) Query: 14 PLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIAR 73 + L+ QV++A+ G+ALG F P ++PLGD F+K KMLI P++F V +GIA Sbjct: 3 KFLRSLFGQVVIALVLGVALGAFFPHFAESLKPLGDGFIKLIKMLIGPIVFCVVVSGIAG 62 Query: 74 MKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHI--K 131 D+K +G++ KA+ F V + ALVIGL++ + PG+GMN+DL+SL+ S+A Sbjct: 63 AGDLKKVGRVGLKAVIYFEVMTTIALVIGLVLAYLTGPGVGMNIDLRSLDAASLAGYAKN 122 Query: 132 SSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEIN 191 + K GF+ +IP TA+ A G+ILQ L+ ++LFG +LSL+GE++ + + ++E++ Sbjct: 123 AQSLKGTAGFLLKLIPTTAVDAFAKGDILQVLLFSVLFGSALSLLGERAKRVNRLIDELS 182 Query: 192 FPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILA 251 +FR++ ++++APLG GA++FT GKYG+ S+ L LV Y T F++ VLG + Sbjct: 183 HVLFRIMGFIIKLAPLGVLGAIAFTTGKYGVGSLKQLGMLVAVFYLTCFVFVVVVLGAVM 242 Query: 252 RFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNL 311 R FS+ KLI +L+EE+L+VL T+SS++ LP +M+K+E G S V +V+PTGYSFNL Sbjct: 243 RLAGFSVFKLIRYLREELLIVLGTASSDAVLPQVMRKLEHMGIKDSTVGLVIPTGYSFNL 302 Query: 312 DGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVP 371 DG +IY+TLA +FI+QATN PLS+ D +++LL+++V+SKGA G+ GSA + LAAT++ +P Sbjct: 303 DGFSIYLTLAAVFIAQATNTPLSMHDLITILLVSLVTSKGAHGIPGSAIVILAATLSAIP 362 Query: 372 SLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLD 415 ++P+ G+ LIL VD FM R++TN IGN V TVVV+ WE +D Sbjct: 363 AIPVLGLVLILPVDWFMGIARALTNLIGNCVATVVVAVWENDID 406 >gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional. Length = 437 Score = 271 bits (695), Expect = 2e-73 Identities = 151/411 (36%), Positives = 243/411 (59%), Gaps = 18/411 (4%) Query: 22 QVLVAIFSGMALG---HFVPQ-----IGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIAR 73 Q+L+A+ G+ LG H+ + + P GDIF+ KM++ P++ T+ GIA Sbjct: 11 QILIALVLGILLGAYLHYHSDSRDWLVSNLLSPAGDIFIHLIKMIVVPIVISTLIVGIAG 70 Query: 74 MKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKS- 132 + D K +G+I K + F V + A+++G+ + N+ +PG G +D+ L T I+ +S Sbjct: 71 VGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAG--IDMSQLATVDISKYQST 128 Query: 133 -----SHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISL-SLVGEKSDTIRKC 186 SH+ +G + +IP +++ G +L + ++LFG+ L SL + + Sbjct: 129 TEEVQSHSHGLMGTILSLIPTNIFASMAKGEMLPIIFFSVLFGLGLSSLPATHREPLVTV 188 Query: 187 LEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGV 246 ++ +F++ +VMR AP+G F ++ T+ +G +S+ L LV +Y FF L V Sbjct: 189 FRSVSETMFKVTHMVMRYAPVGVFALIAVTVANFGFASLWPLAKLVLLVYFAILFFALVV 248 Query: 247 LGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTG 306 LGI+AR C SI LI LK+E++L ST+SSE+ LP +++KME G +SI S VVPTG Sbjct: 249 LGIVARLCGLSIWILIRILKDELILAYSTASSETVLPRIIEKMEAYGAPKSITSFVVPTG 308 Query: 307 YSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAAT 366 YSFNLDGS +Y ++A +FI+Q + LS+ ++ L+L MV+SKG AGV G +F+ L AT Sbjct: 309 YSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLAT 368 Query: 367 ITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPK 417 + V +P+ G+ I GVDR + R+ N +GNA+ +V+++WE K D K Sbjct: 369 LGSV-GIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRK 418 >gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional. Length = 402 Score = 71.4 bits (176), Expect = 4e-13 Identities = 82/352 (23%), Positives = 158/352 (44%), Gaps = 36/352 (10%) Query: 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPV-IFLTVSTGIARMK-- 75 L Q+L+ + G+ L P + LG +FV K + P+ +F+ V IA K Sbjct: 16 LVKQILIGLVLGILLALLSPPAAEAVGLLGTLFVGALKA-VAPILVFVLVMASIANHKKG 74 Query: 76 ---DMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNT-ESIAHIK 131 +++ I + L+ + + A ++ ++ + + + ++ + I + Sbjct: 75 QKTNIRPI-------LVLYLLGTFLAALVAVVASFLFPSTLVLVASAADISPPQGIVEVL 127 Query: 132 SSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEIN 191 + S + D ++AL + N + L A+ G++L SDT + + +++ Sbjct: 128 KTLLLSLV--------DNPINALLNANYIGILAWAIGLGLALRHA---SDTTKNVVNDLS 176 Query: 192 FPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILA 251 V ++V V+R AP+G FG ++ T+ + G S+++ L+ L F L V ++ Sbjct: 177 EAVSQIVKWVIRFAPIGIFGLVASTLAETGFSALAGYAQLLAVLVGCMLFVALVVNPLIV 236 Query: 252 RFCRFSIIK------LIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPT 305 F I+ + L+E + T SS + +P M E+ G S+ +P Sbjct: 237 ----FWKIRRNPYPLVFTCLRESGVTAFFTRSSAANIPVNMALCEKLGLDEDTYSVSIPL 292 Query: 306 GYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTG 357 G + N+ G+ I IT+ TL +P+ L L L ++A +S+ GA+GV G Sbjct: 293 GATINMAGAAITITVLTLAAVHTLGIPVDLPTALLLSVVAAISACGASGVAG 344 >gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional. Length = 319 Score = 65.5 bits (159), Expect = 3e-11 Identities = 65/267 (24%), Positives = 124/267 (46%), Gaps = 14/267 (5%) Query: 148 DTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPL 207 D+ ++AL + N + L A++FGI++ + S + K + ++ ++V ++ +AP Sbjct: 50 DSPVNALLTANYIGILSWAVIFGIAMREASKNSKELLKTIADVTS---KIVEWIINLAPF 106 Query: 208 GAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARF--CRFSIIKLII-F 264 G G + TI G+ S++N L+ L T+ F+ V+ L F R + L+ Sbjct: 107 GILGLVFKTISDKGVGSLANYGILLVLL-VTTMLFVAPVVNPLIAFFFMRRNPYPLVWNC 165 Query: 265 LKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLATLF 324 L+ + T SS + +P MK + G + S+ +P G + N+ G I I L TL Sbjct: 166 LRVSGVTAFFTRSSATNIPVNMKLCHDLGLNPDTYSVSIPLGSTINMAGVAITINLLTLV 225 Query: 325 ISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVP-----SLPIAGMT 379 +P+ L ++A +S+ GA+G+ G + + + +L ++ I G+ Sbjct: 226 TVNTLGIPVDFATAFVLSVVAAISACGASGIAGGSLLLIPVACSLFGISNDIAIQIVGVG 285 Query: 380 LILGVDRFMSECRSVTNFIGNAVMTVV 406 ++GV C + N + + T V Sbjct: 286 FVIGV--IQDSCETALNSSTDVLFTAV 310 >gnl|CDD|179670 PRK03903, PRK03903, transaldolase; Provisional. Length = 274 Score = 31.5 bits (72), Expect = 0.44 Identities = 12/22 (54%), Positives = 17/22 (77%) Query: 400 NAVMTVVVSRWEKKLDPKLFNK 421 AV++V VSR+++ LDPKL K Sbjct: 130 KAVISVFVSRFDRLLDPKLAPK 151 >gnl|CDD|116036 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein (LMP2) protein. This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus is a human Gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear. Length = 489 Score = 31.0 bits (70), Expect = 0.57 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Query: 339 LSLLLIAMV---SSKGAAGVTGSAFITLAATITLVPSLPIAGMTL 380 L+LLL+A + SS G G+A +TLAA + L+ SL + + L Sbjct: 274 LTLLLLAFLLWLSSPHGMGALGAALLTLAAALALLASLILGDLNL 318 >gnl|CDD|152171 pfam11735, CAP59_mtransfer, Cryptococcal mannosyltransferase 1. The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1, EC:2.4.1.-. Length = 244 Score = 29.9 bits (68), Expect = 1.3 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Query: 228 LIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEE--VLLVL---STSSSESAL 282 +F+ L+ + + + G ++++LI L E + + S ++ AL Sbjct: 1 RVFIALSLHWNNEEILRDLWGD-------AVVELIRLLGPENVFVSIYESGSGDGTKEAL 53 Query: 283 PGLMKKMEEAGCHRSIV 299 L +++ G RSIV Sbjct: 54 RALDPELDALGVRRSIV 70 >gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional. Length = 1560 Score = 29.3 bits (65), Expect = 2.0 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 299 VSMVVPTGYSFNLDGSNIYITLATLFISQA----TNVPLSLTDQLSLLLIAMVSSKGAAG 354 V +++P Y N++ + T I+Q TN +S T +S L+A S G Sbjct: 780 VDIIIPPIYYHNVNKFKLTYTYLNKNINQTAFMITNKIMSFTKHISNSLVANDSKGGNKA 839 Query: 355 VTGSAF 360 + SAF Sbjct: 840 TSASAF 845 >gnl|CDD|162157 TIGR01013, 2a58, Phosphate:Na+ Symporter (PNaS) Family. Length = 456 Score = 29.1 bits (65), Expect = 2.1 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 8/128 (6%) Query: 50 IFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFAL-VIGLIVGNI 108 +FV + +L I L G A D+ + W + L F+ ++ + Sbjct: 6 VFVCSLAVLSAAFILLGAKVGGAIFADILITD-NPWASPLLGFLGTVLLQSSSTSRSIVV 64 Query: 109 AKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALL 168 G+ + L ++ A+I SS + + MQ A VA + Sbjct: 65 GMVSAGLLLVLLAIPLIMGANIGSSVTNAIVAIMQSGDRAWFRRAFIGA------TVADI 118 Query: 169 FGISLSLV 176 F SL+LV Sbjct: 119 FNSSLALV 126 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 28.3 bits (63), Expect = 3.9 Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 8/93 (8%) Query: 204 IAPLGAFGAMSFTIGKY---GLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSII- 259 IA F A I Y GL L+F+V L A F L LG+ R FS+I Sbjct: 107 IASYDPFNAPEREIAYYLALGLC----LLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162 Query: 260 KLIIFLKEEVLLVLSTSSSESALPGLMKKMEEA 292 K + L VL +ST S L + K +E Sbjct: 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEG 195 >gnl|CDD|165708 PLN00140, PLN00140, alcohol acetyltransferase family protein; Provisional. Length = 444 Score = 27.5 bits (61), Expect = 6.0 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 16/61 (26%) Query: 80 IGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFI 139 IG +FW A+ + A I +N +L SL ESIA+ S + KS Sbjct: 294 IGNLFWWAL---------------AAADPADTKIELN-ELVSLTRESIANYNSDYLKSLQ 337 Query: 140 G 140 G Sbjct: 338 G 338 >gnl|CDD|179102 PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated. Length = 666 Score = 27.0 bits (61), Expect = 8.6 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 4/94 (4%) Query: 25 VAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVI-FLTVSTGIARMKDMKVIGQI 83 V I + M LG + + + +I +I V G MK + + Sbjct: 214 VTIVAAMVLGAAAADAAFGVAGVLFPLLIAAVGIIASIIGIFFVRLG-KGGNPMKALNRG 272 Query: 84 FWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNV 117 L V ++G+ A +N+ Sbjct: 273 LIVTAVLSIVL--TYFATYWLLGDGADGFTWLNL 304 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.327 0.141 0.400 Gapped Lambda K H 0.267 0.0836 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,753,231 Number of extensions: 444587 Number of successful extensions: 1549 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1537 Number of HSP's successfully gapped: 82 Length of query: 426 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 330 Effective length of database: 3,920,105 Effective search space: 1293634650 Effective search space used: 1293634650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 58 (25.9 bits)