RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter
DctA [Candidatus Liberibacter asiaticus str. psy62]
(426 letters)
>gnl|CDD|179317 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.
Length = 428
Score = 542 bits (1400), Expect = e-155
Identities = 218/407 (53%), Positives = 307/407 (75%), Gaps = 1/407 (0%)
Query: 12 RPPLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGI 71
+ PLYK LY QVLVAI G+ LGHF P++G QM+PLGD F+K KM+I P+IF TV TGI
Sbjct: 2 KKPLYKSLYFQVLVAIIIGILLGHFYPELGAQMKPLGDGFIKLIKMIIAPIIFCTVVTGI 61
Query: 72 ARMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIA-HI 130
A M DMK +G++ KA+ F + S AL+IGLIV N+ +PG GMN+D +L+ +++A +
Sbjct: 62 AGMGDMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQPGAGMNIDPATLDAKAVAQYA 121
Query: 131 KSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEI 190
+H + + F+ D+IP T + A SG+ILQ L+ A+LFG +L+ +GEK + +E +
Sbjct: 122 AQAHEQGTVDFLMDIIPTTVVGAFASGDILQVLLFAVLFGFALARLGEKGKPVFDFIESL 181
Query: 191 NFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGIL 250
+ +F +V+++M++AP+GAFGAM+FTIGKYG+ S+ L L+ C Y T F+ VLG +
Sbjct: 182 SHVLFGIVNMIMKLAPIGAFGAMAFTIGKYGVGSLVQLGQLIGCFYITCILFVFVVLGAI 241
Query: 251 ARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFN 310
AR FSI K I ++KEE+L+VL TSSSESALP +M+KME+ GC +S+V +V+PTGYSFN
Sbjct: 242 ARLTGFSIFKFIRYIKEELLIVLGTSSSESALPRMMEKMEKLGCKKSVVGLVIPTGYSFN 301
Query: 311 LDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLV 370
LDG++IY+T+A +FI+QATN PLS+ Q++LL + +++SKGAAGVTGS FI LAAT++ V
Sbjct: 302 LDGTSIYLTMAAVFIAQATNTPLSIGHQITLLAVLLLTSKGAAGVTGSGFIVLAATLSAV 361
Query: 371 PSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPK 417
P +P+AG+ LILG+DRFMSE R++TN IGN V TVVV++WEK+LD +
Sbjct: 362 PHIPVAGLALILGIDRFMSEARALTNLIGNGVATVVVAKWEKELDRE 408
>gnl|CDD|183850 PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed.
Length = 421
Score = 458 bits (1181), Expect = e-129
Identities = 184/404 (45%), Positives = 280/404 (69%), Gaps = 2/404 (0%)
Query: 14 PLYKILYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIAR 73
+ L+ QV++A+ G+ALG F P ++PLGD F+K KMLI P++F V +GIA
Sbjct: 3 KFLRSLFGQVVIALVLGVALGAFFPHFAESLKPLGDGFIKLIKMLIGPIVFCVVVSGIAG 62
Query: 74 MKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHI--K 131
D+K +G++ KA+ F V + ALVIGL++ + PG+GMN+DL+SL+ S+A
Sbjct: 63 AGDLKKVGRVGLKAVIYFEVMTTIALVIGLVLAYLTGPGVGMNIDLRSLDAASLAGYAKN 122
Query: 132 SSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEIN 191
+ K GF+ +IP TA+ A G+ILQ L+ ++LFG +LSL+GE++ + + ++E++
Sbjct: 123 AQSLKGTAGFLLKLIPTTAVDAFAKGDILQVLLFSVLFGSALSLLGERAKRVNRLIDELS 182
Query: 192 FPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILA 251
+FR++ ++++APLG GA++FT GKYG+ S+ L LV Y T F++ VLG +
Sbjct: 183 HVLFRIMGFIIKLAPLGVLGAIAFTTGKYGVGSLKQLGMLVAVFYLTCFVFVVVVLGAVM 242
Query: 252 RFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNL 311
R FS+ KLI +L+EE+L+VL T+SS++ LP +M+K+E G S V +V+PTGYSFNL
Sbjct: 243 RLAGFSVFKLIRYLREELLIVLGTASSDAVLPQVMRKLEHMGIKDSTVGLVIPTGYSFNL 302
Query: 312 DGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVP 371
DG +IY+TLA +FI+QATN PLS+ D +++LL+++V+SKGA G+ GSA + LAAT++ +P
Sbjct: 303 DGFSIYLTLAAVFIAQATNTPLSMHDLITILLVSLVTSKGAHGIPGSAIVILAATLSAIP 362
Query: 372 SLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLD 415
++P+ G+ LIL VD FM R++TN IGN V TVVV+ WE +D
Sbjct: 363 AIPVLGLVLILPVDWFMGIARALTNLIGNCVATVVVAVWENDID 406
>gnl|CDD|183075 PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.
Length = 437
Score = 271 bits (695), Expect = 2e-73
Identities = 151/411 (36%), Positives = 243/411 (59%), Gaps = 18/411 (4%)
Query: 22 QVLVAIFSGMALG---HFVPQ-----IGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIAR 73
Q+L+A+ G+ LG H+ + + P GDIF+ KM++ P++ T+ GIA
Sbjct: 11 QILIALVLGILLGAYLHYHSDSRDWLVSNLLSPAGDIFIHLIKMIVVPIVISTLIVGIAG 70
Query: 74 MKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKS- 132
+ D K +G+I K + F V + A+++G+ + N+ +PG G +D+ L T I+ +S
Sbjct: 71 VGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAG--IDMSQLATVDISKYQST 128
Query: 133 -----SHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISL-SLVGEKSDTIRKC 186
SH+ +G + +IP +++ G +L + ++LFG+ L SL + +
Sbjct: 129 TEEVQSHSHGLMGTILSLIPTNIFASMAKGEMLPIIFFSVLFGLGLSSLPATHREPLVTV 188
Query: 187 LEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGV 246
++ +F++ +VMR AP+G F ++ T+ +G +S+ L LV +Y FF L V
Sbjct: 189 FRSVSETMFKVTHMVMRYAPVGVFALIAVTVANFGFASLWPLAKLVLLVYFAILFFALVV 248
Query: 247 LGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTG 306
LGI+AR C SI LI LK+E++L ST+SSE+ LP +++KME G +SI S VVPTG
Sbjct: 249 LGIVARLCGLSIWILIRILKDELILAYSTASSETVLPRIIEKMEAYGAPKSITSFVVPTG 308
Query: 307 YSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAAT 366
YSFNLDGS +Y ++A +FI+Q + LS+ ++ L+L MV+SKG AGV G +F+ L AT
Sbjct: 309 YSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLAT 368
Query: 367 ITLVPSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPK 417
+ V +P+ G+ I GVDR + R+ N +GNA+ +V+++WE K D K
Sbjct: 369 LGSV-GIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRK 418
>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.
Length = 402
Score = 71.4 bits (176), Expect = 4e-13
Identities = 82/352 (23%), Positives = 158/352 (44%), Gaps = 36/352 (10%)
Query: 19 LYIQVLVAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPV-IFLTVSTGIARMK-- 75
L Q+L+ + G+ L P + LG +FV K + P+ +F+ V IA K
Sbjct: 16 LVKQILIGLVLGILLALLSPPAAEAVGLLGTLFVGALKA-VAPILVFVLVMASIANHKKG 74
Query: 76 ---DMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNT-ESIAHIK 131
+++ I + L+ + + A ++ ++ + + + ++ + I +
Sbjct: 75 QKTNIRPI-------LVLYLLGTFLAALVAVVASFLFPSTLVLVASAADISPPQGIVEVL 127
Query: 132 SSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEIN 191
+ S + D ++AL + N + L A+ G++L SDT + + +++
Sbjct: 128 KTLLLSLV--------DNPINALLNANYIGILAWAIGLGLALRHA---SDTTKNVVNDLS 176
Query: 192 FPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILA 251
V ++V V+R AP+G FG ++ T+ + G S+++ L+ L F L V ++
Sbjct: 177 EAVSQIVKWVIRFAPIGIFGLVASTLAETGFSALAGYAQLLAVLVGCMLFVALVVNPLIV 236
Query: 252 RFCRFSIIK------LIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPT 305
F I+ + L+E + T SS + +P M E+ G S+ +P
Sbjct: 237 ----FWKIRRNPYPLVFTCLRESGVTAFFTRSSAANIPVNMALCEKLGLDEDTYSVSIPL 292
Query: 306 GYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTG 357
G + N+ G+ I IT+ TL +P+ L L L ++A +S+ GA+GV G
Sbjct: 293 GATINMAGAAITITVLTLAAVHTLGIPVDLPTALLLSVVAAISACGASGVAG 344
>gnl|CDD|173158 PRK14695, PRK14695, serine/threonine transporter SstT; Provisional.
Length = 319
Score = 65.5 bits (159), Expect = 3e-11
Identities = 65/267 (24%), Positives = 124/267 (46%), Gaps = 14/267 (5%)
Query: 148 DTALSALTSGNILQTLIVALLFGISLSLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPL 207
D+ ++AL + N + L A++FGI++ + S + K + ++ ++V ++ +AP
Sbjct: 50 DSPVNALLTANYIGILSWAVIFGIAMREASKNSKELLKTIADVTS---KIVEWIINLAPF 106
Query: 208 GAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARF--CRFSIIKLII-F 264
G G + TI G+ S++N L+ L T+ F+ V+ L F R + L+
Sbjct: 107 GILGLVFKTISDKGVGSLANYGILLVLL-VTTMLFVAPVVNPLIAFFFMRRNPYPLVWNC 165
Query: 265 LKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITLATLF 324
L+ + T SS + +P MK + G + S+ +P G + N+ G I I L TL
Sbjct: 166 LRVSGVTAFFTRSSATNIPVNMKLCHDLGLNPDTYSVSIPLGSTINMAGVAITINLLTLV 225
Query: 325 ISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLAATITLVP-----SLPIAGMT 379
+P+ L ++A +S+ GA+G+ G + + + +L ++ I G+
Sbjct: 226 TVNTLGIPVDFATAFVLSVVAAISACGASGIAGGSLLLIPVACSLFGISNDIAIQIVGVG 285
Query: 380 LILGVDRFMSECRSVTNFIGNAVMTVV 406
++GV C + N + + T V
Sbjct: 286 FVIGV--IQDSCETALNSSTDVLFTAV 310
>gnl|CDD|179670 PRK03903, PRK03903, transaldolase; Provisional.
Length = 274
Score = 31.5 bits (72), Expect = 0.44
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 400 NAVMTVVVSRWEKKLDPKLFNK 421
AV++V VSR+++ LDPKL K
Sbjct: 130 KAVISVFVSRFDRLLDPKLAPK 151
>gnl|CDD|116036 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 31.0 bits (70), Expect = 0.57
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 339 LSLLLIAMV---SSKGAAGVTGSAFITLAATITLVPSLPIAGMTL 380
L+LLL+A + SS G G+A +TLAA + L+ SL + + L
Sbjct: 274 LTLLLLAFLLWLSSPHGMGALGAALLTLAAALALLASLILGDLNL 318
>gnl|CDD|152171 pfam11735, CAP59_mtransfer, Cryptococcal mannosyltransferase 1.
The capsule of pathogenic fungi is a complex
polysaccharide whose formation is determined by a number
of enzymes including, most importantly,
alpha-1,3-mannosyltransferase 1, EC:2.4.1.-.
Length = 244
Score = 29.9 bits (68), Expect = 1.3
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 228 LIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEE--VLLVL---STSSSESAL 282
+F+ L+ + + + G ++++LI L E + + S ++ AL
Sbjct: 1 RVFIALSLHWNNEEILRDLWGD-------AVVELIRLLGPENVFVSIYESGSGDGTKEAL 53
Query: 283 PGLMKKMEEAGCHRSIV 299
L +++ G RSIV
Sbjct: 54 RALDPELDALGVRRSIV 70
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 29.3 bits (65), Expect = 2.0
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 299 VSMVVPTGYSFNLDGSNIYITLATLFISQA----TNVPLSLTDQLSLLLIAMVSSKGAAG 354
V +++P Y N++ + T I+Q TN +S T +S L+A S G
Sbjct: 780 VDIIIPPIYYHNVNKFKLTYTYLNKNINQTAFMITNKIMSFTKHISNSLVANDSKGGNKA 839
Query: 355 VTGSAF 360
+ SAF
Sbjct: 840 TSASAF 845
>gnl|CDD|162157 TIGR01013, 2a58, Phosphate:Na+ Symporter (PNaS) Family.
Length = 456
Score = 29.1 bits (65), Expect = 2.1
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 8/128 (6%)
Query: 50 IFVKTTKMLITPVIFLTVSTGIARMKDMKVIGQIFWKAMFLFFVFSMFAL-VIGLIVGNI 108
+FV + +L I L G A D+ + W + L F+ ++ +
Sbjct: 6 VFVCSLAVLSAAFILLGAKVGGAIFADILITD-NPWASPLLGFLGTVLLQSSSTSRSIVV 64
Query: 109 AKPGIGMNVDLKSLNTESIAHIKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALL 168
G+ + L ++ A+I SS + + MQ A VA +
Sbjct: 65 GMVSAGLLLVLLAIPLIMGANIGSSVTNAIVAIMQSGDRAWFRRAFIGA------TVADI 118
Query: 169 FGISLSLV 176
F SL+LV
Sbjct: 119 FNSSLALV 126
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 28.3 bits (63), Expect = 3.9
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 204 IAPLGAFGAMSFTIGKY---GLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSII- 259
IA F A I Y GL L+F+V L A F L LG+ R FS+I
Sbjct: 107 IASYDPFNAPEREIAYYLALGLC----LLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIY 162
Query: 260 KLIIFLKEEVLLVLSTSSSESALPGLMKKMEEA 292
K + L VL +ST S L + K +E
Sbjct: 163 KKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEG 195
>gnl|CDD|165708 PLN00140, PLN00140, alcohol acetyltransferase family protein;
Provisional.
Length = 444
Score = 27.5 bits (61), Expect = 6.0
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 80 IGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKSSHAKSFI 139
IG +FW A+ + A I +N +L SL ESIA+ S + KS
Sbjct: 294 IGNLFWWAL---------------AAADPADTKIELN-ELVSLTRESIANYNSDYLKSLQ 337
Query: 140 G 140
G
Sbjct: 338 G 338
>gnl|CDD|179102 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 27.0 bits (61), Expect = 8.6
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 25 VAIFSGMALGHFVPQIGVQMQPLGDIFVKTTKMLITPVI-FLTVSTGIARMKDMKVIGQI 83
V I + M LG + + + +I +I V G MK + +
Sbjct: 214 VTIVAAMVLGAAAADAAFGVAGVLFPLLIAAVGIIASIIGIFFVRLG-KGGNPMKALNRG 272
Query: 84 FWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNV 117
L V ++G+ A +N+
Sbjct: 273 LIVTAVLSIVL--TYFATYWLLGDGADGFTWLNL 304
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.327 0.141 0.400
Gapped
Lambda K H
0.267 0.0836 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,753,231
Number of extensions: 444587
Number of successful extensions: 1549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1537
Number of HSP's successfully gapped: 82
Length of query: 426
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 330
Effective length of database: 3,920,105
Effective search space: 1293634650
Effective search space used: 1293634650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (25.9 bits)