RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780387|ref|YP_003064800.1| C4-dicarboxylate transporter
DctA [Candidatus Liberibacter asiaticus str. psy62]
(426 letters)
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein,
helical hairpin, unwound region, transport protein; HET:
PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A*
2nwx_A*
Length = 422
Score = 201 bits (511), Expect = 3e-52
Identities = 104/418 (24%), Positives = 206/418 (49%), Gaps = 26/418 (6%)
Query: 19 LYIQVLVAIFSGMALGHFVPQ------IGVQMQPLGDIFVKTTKMLITPVIFLTVSTGIA 72
+ I++L+ + G +G + + ++P GD+FV+ KML+ P++F ++ G A
Sbjct: 12 VLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAA 71
Query: 73 RMKDMKVIGQIFWKAMFLFFVFSMFALVIGLIVGNIAKPGIGMNVDLKSLNTESIAHIKS 132
+ ++ G++ K + + + S FA+ +G+I+ + PG G+++ +
Sbjct: 72 SISPARL-GRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLA------VGGQQFQP 124
Query: 133 SHAKSFIGFMQDMIPDTALSALTSGNILQTLIVALLFGISLSLVG--------EKSDTIR 184
A + + D++P AL +G +L T+ A++ GI+++ + + ++T+
Sbjct: 125 HQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLL 184
Query: 185 KCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSSISNLIFLVFCLYATSAFFIL 244
+ + ++++V+ VM+ AP+G F +++ + + G+ + L + +Y IL
Sbjct: 185 DAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQIL 244
Query: 245 GVLGILARFCRFSIIKLIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVP 304
V +L + I I K+ +L T SS LP M+ +E G I S +P
Sbjct: 245 LVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLP 304
Query: 305 TGYSFNLDGSNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAGVTGSAFITLA 364
G + N+DG+ +Y + T FI+ A L++ QL+++L A+++S G AGV G+ I LA
Sbjct: 305 LGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLA 364
Query: 365 ATITLV-----PSLPIAGMTLILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPK 417
+ V A +ILG+D + R++ N G+ T +V++ E L P+
Sbjct: 365 MVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTEGTLVPR 422
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 50.7 bits (121), Expect = 6e-07
Identities = 55/363 (15%), Positives = 97/363 (26%), Gaps = 146/363 (40%)
Query: 119 LKSLN--TESIAH---IKSSH--AKSFIGFMQDMIPDTALSALTS--GNILQTLIVALLF 169
K L TE A + F+G++ ++ + + L L
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 170 GISL-----SLVGEKSDTIRKCLEEINFPVFRMVSIVMRIAPLGAFGAMSFTIGKYGLSS 224
G + L+ E T+ K E +++ A + S
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKE------------LIKNY----ITARIMAKRPFDKKS 141
Query: 225 ISNL----------IFLVF--------C------LYATSAFFILGVLGILARFCRFSIIK 260
S L + +F LY T + +FS
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV-------GDLIKFS--- 191
Query: 261 LIIFLKEEVLLVLSTSSSESALPGLMKKMEEAGCHRSIVSMVVPTGYSFNLDGSNIYITL 320
E L L ++ ++ +K+ ++ L+ L
Sbjct: 192 ------AETLSELIRTTLDA------EKV-----------------FTQGLN------IL 216
Query: 321 ATLFISQATNVPLSLTDQL-----SLLLIA-------MVSSKGAAGVTGSAFITLAATIT 368
L +N P D L S LI +V++K G T +
Sbjct: 217 EWL--ENPSNTPD--KDYLLSIPISCPLIGVIQLAHYVVTAK-LLGFTPGELRSY----- 266
Query: 369 LVPSLPIAGMT-----LILGVDRFMSECRSVTNFIGNAVMTVVVSRWEKKLDPKLFNKYI 423
+ G T L+ V ++E S +F + + V LF +I
Sbjct: 267 ------LKGATGHSQGLVTAV--AIAETDSWESFFVSVRKAITV----------LF--FI 306
Query: 424 GIE 426
G+
Sbjct: 307 GVR 309
Score = 33.0 bits (75), Expect = 0.13
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 33/121 (27%)
Query: 295 HRSI-VSMVVPTGYSFNLDGSNIYITLATLF---ISQATNVPLSLTDQLSLLLIAMVSSK 350
H S+ ++VPT F L F + + T + + + +
Sbjct: 13 HGSLEHVLLVPTASFFIAS------QLQEQFNKILPEPTEGFAADDEPTTPAELV----- 61
Query: 351 GAAGVTGSAFITLAATITLVPSLPIAGMTLILG--VDRFMSECRSVTNFI-GNAVMTVVV 407
F+ + +LV + +L + F + ++ GN + +
Sbjct: 62 -------GKFLGYVS--SLVEPSKVGQFDQVLNLCLTEFENC------YLEGNDIHALAA 106
Query: 408 S 408
Sbjct: 107 K 107
Score = 29.9 bits (67), Expect = 1.2
Identities = 40/255 (15%), Positives = 76/255 (29%), Gaps = 90/255 (35%)
Query: 214 SFTIGKYGLSSISNLIFLVFCLYATSAFFILGVLGILARFCRFSIIKLIIFLKEEVLLVL 273
T+ +G S+ + LV T++FFI L +E+ +L
Sbjct: 8 PLTLS-HG--SLE-HVLLV----PTASFFIASQL------------------QEQFNKIL 41
Query: 274 STSSSESAL-------PGLMKKM----------EEAGCHRSIVSMVVPTGYSFN---LDG 313
+ A L+ K + G ++++ + F L+G
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT---EFENCYLEG 98
Query: 314 SNIYITLATLFISQATNVPLSLTDQLSLLLIAMVSSKGAAG-----VTGSAFITLAATIT 368
++I+ A L T + + L+ ++++ A + SA
Sbjct: 99 NDIHALAAKLLQENDTTLV-----KTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-- 151
Query: 369 LVPSLPIAGMTLILG----VDRFMSECRS--------VTNFIGNAVMTVVVSRWEKKL-- 414
A + I G D + E R V + I +S L
Sbjct: 152 -----GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI--KFSAETLSE----LIR 200
Query: 415 DP----KLFNKYIGI 425
K+F + + I
Sbjct: 201 TTLDAEKVFTQGLNI 215
Score = 28.8 bits (64), Expect = 2.3
Identities = 31/186 (16%), Positives = 52/186 (27%), Gaps = 90/186 (48%)
Query: 99 LVIGLIVG--N--IAKPGI---GMNVDLKS------LNTESIAHIK-------------- 131
+ I L+ G N ++ P G+N+ L+ L+ I +
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 132 ---SSH---AKSFIGFMQDM-------------IP--DTA----LSALTSGNILQTLIVA 166
S A I +D+ IP DT L L SG+I + ++
Sbjct: 426 PFHSHLLVPASDLI--NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL-SGSISERIVDC 482
Query: 167 LLFGISLSLVGEKSDTIRKCLEEINFP---VFRMVSIVMRIAPLGAFGAMSFTIGKYGLS 223
+ + + F+ I+ FG G G S
Sbjct: 483 I------------------IRLPVKWETTTQFKATHIL-------DFGP-----G--GAS 510
Query: 224 SISNLI 229
+ L
Sbjct: 511 GLGVLT 516
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
elongation complex, transcription/DNA/RNA complex; 2.10A
{Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A
1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A*
3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Length = 883
Score = 28.6 bits (63), Expect = 2.7
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 350 KGAAGVTGSAFITLAATITLVPSLPIAGMTLILGVDRFMSE----CRSVTNFIGNAVMTV 405
K G +AF L + +A +T+ + S ++V + IG A+
Sbjct: 93 KAKRGKRPTAFQFLQ----EIKPEAVAYITIKTTLACLTSADNTTVQAVASAIGRAIEDE 148
Query: 406 VVSRWEKKLDPKLFNKYI 423
+ L+ K F K +
Sbjct: 149 ARFGRIRDLEAKHFKKNV 166
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A
{Geobacillus stearothermophilus} SCOP: c.52.1.7
Length = 293
Score = 27.6 bits (61), Expect = 5.7
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 130 IKSSHAKSFIGFMQDMIPDTALSALTSGNILQTLIVAL------------LFGISLSLVG 177
K + +G + PD L + GNIL++L L +G S V
Sbjct: 186 CKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEPVS 245
Query: 178 EKSDTI 183
K+D
Sbjct: 246 -KADDD 250
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.327 0.141 0.400
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,376,285
Number of extensions: 149002
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 36
Length of query: 426
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 331
Effective length of database: 3,390,050
Effective search space: 1122106550
Effective search space used: 1122106550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.6 bits)