HHsearch alignment for GI: 254780388 and conserved domain: cd01454
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.50 E-value=8.1e-06 Score=55.53 Aligned_cols=91 Identities=19% Similarity=0.333 Sum_probs=66.6
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC---------CHHHHHHHHHHH
Q ss_conf 65641256777776458899999862366665444456677750699999606688885---------408999999998
Q gi|254780388|r 325 KTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDN---------EEGIAICNKAKS 395 (458)
Q Consensus 325 ~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~---------~~~~~~C~~~K~ 395 (458)
T Consensus 72 ~~~i~~l~~~g~Tr~G~Air~a~~~L~~-----------~~~~rkiliviSDG~P~D~~~~~~~~~~~~D~~~av~e~~~ 140 (174)
T cd01454 72 RKRLAALSPGGNTRDGAAIRHAAERLLA-----------RPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARK 140 (174)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHH-----------CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8888511878989617999999999863-----------97666799998389976677788755389999999999998
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCE
Q ss_conf 796899999437887431178999860689837
Q gi|254780388|r 396 QGIRIMTIAFSVNKTQQEKARYFLSNCASPNSF 428 (458)
Q Consensus 396 ~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~y 428 (458)
T Consensus 141 ~GI~~~~i~i~~~~~~--~~~~~l~~i~g~~~~ 171 (174)
T cd01454 141 LGIEVFGITIDRDATT--VDKEYLKNIFGEEGY 171 (174)
T ss_pred CCCEEEEEEECCCCCH--HHHHHHHHHCCCCCE
T ss_conf 7988999998985556--699999984287877