HHsearch alignment for GI: 254780388 and conserved domain: cd01462
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.93 E-value=3.8e-08 Score=70.41 Aligned_cols=78 Identities=24% Similarity=0.213 Sum_probs=62.6
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 66665641256777776458899999862366665444456677750699999606688885408999999998796899
Q gi|254780388|r 322 TIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIM 401 (458)
Q Consensus 322 ~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~Iy 401 (458)
T Consensus 60 ~~~~~~i~~~~~~GGT~i~~aL~~A~~~l~~~-----------~~~~~~IvlITDG~~~~~~~~~~~~~~~~~~~~~r~~ 128 (152)
T cd01462 60 EEPVEFLSGVQLGGGTDINKALRYALELIERR-----------DPRKADIVLITDGYEGGVSDELLREVELKRSRVARFV 128 (152)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC-----------CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 99999997253689865799999999987425-----------7656469998267567983999999999983891999
Q ss_pred EEEECCCCC
Q ss_conf 999437887
Q gi|254780388|r 402 TIAFSVNKT 410 (458)
Q Consensus 402 tI~f~~~~~ 410 (458)
T Consensus 129 ~~~iG~~~~ 137 (152)
T cd01462 129 ALALGDHGN 137 (152)
T ss_pred EEEECCCCC
T ss_conf 999899988