HHsearch alignment for GI: 254780388 and conserved domain: cd01466
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.59 E-value=5.7e-14 Score=107.62 Aligned_cols=136 Identities=20% Similarity=0.221 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 06677766522112346775666520121100677665565576812100566665641256777776458899999862
Q gi|254780388|r 271 KHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTI 350 (458)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~L 350 (458)
T Consensus 18 l~~~k~a~~~~~~~L~------~~d~v~iV~F~~~a~~~~pl~~~~-~~~~~~~~~~i~~l~~~GgT~i~~gl~~a~~~l 90 (155)
T cd01466 18 LQLVKHALRFVISSLG------DADRLSIVTFSTSAKRLSPLRRMT-AKGKRSAKRVVDGLQAGGGTNVVGGLKKALKVL 90 (155)
T ss_pred HHHHHHHHHHHHHHCC------CCCEEEEEEECCCCEEEECCEECC-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999998489------767489999568742620460379-999999999875377688872679999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHC--CCCCE
Q ss_conf 3666654444566777506999996066888854089999999987968999994378874311789998606--89837
Q gi|254780388|r 351 ISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA--SPNSF 428 (458)
Q Consensus 351 s~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CA--s~~~y 428 (458)
T Consensus 91 ~~~~---------~~~~~~~IiLlTDG~~n~~-----~~~~~~~~~~i~i~tiGiG~~~-----d~~lL~~iA~~~gG~~ 151 (155)
T cd01466 91 GDRR---------QKNPVASIMLLSDGQDNHG-----AVVLRADNAPIPIHTFGLGASH-----DPALLAFIAEITGGTF 151 (155)
T ss_pred HHCC---------CCCCCEEEEEECCCCCCHH-----HHHHHHHCCCCEEEEEEECCCC-----CHHHHHHHHHCCCCEE
T ss_conf 8436---------6898308999826986405-----7789987179739999978867-----8999999997699779
Q ss_pred EEEC
Q ss_conf 8829
Q gi|254780388|r 429 FEAN 432 (458)
Q Consensus 429 y~a~ 432 (458)
T Consensus 152 ~~v~ 155 (155)
T cd01466 152 SYVK 155 (155)
T ss_pred EEEC
T ss_conf 9949