>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

Probab=99.39 E-value=5.8e-11 Score=88.38 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=104.6 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHC Q ss_conf 6777665221123467756665201211006776655655768121005666656412567-777764588999998623 Q gi|254780388|r 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENE-MGSTAINDAMQTAYDTII 351 (458) Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~T~~~~gl~~g~~~Ls 351 (458) T Consensus 22 ~~k~Fv~~lv~~f~I---~~~~trVgvv~ys~~~~~~f~l~~~---~~k~~l~~aI~~i~~~gggT~Tg~AL~~~~~~~f 95 (224) T cd01475 22 LVKQFLNQIIDSLDV---GPDATRVGLVQYSSTVKQEFPLGRF---KSKADLKRAVRRMEYLETGTMTGLAIQYAMNNAF 95 (224) T ss_pred HHHHHHHHHHHHCCC---CCCCEEEEEEEECCCEEEEEECCCC---CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC T ss_conf 999999999985687---9985299999965827899966886---7889999999863613884469999999999727 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCC---CCE Q ss_conf 66665444456677750699999606688885408999999998796899999437887431178999860689---837 Q gi|254780388|r 352 SSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASP---NSF 428 (458) Q Consensus 352 ~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~---~~y 428 (458) T Consensus 96 ~~~~G~Rp~---~~~vpkvlIviTDG~s~---D~v~~~A~~lr~~GV~ifaVGVg~-~-----~~~eL~~IAs~P~~~hv 163 (224) T cd01475 96 SEAEGARPG---SERVPRVGIVVTDGRPQ---DDVSEVAAKARALGIEMFAVGVGR-A-----DEEELREIASEPLADHV 163 (224) T ss_pred CCCCCCCCC---CCCCCEEEEEECCCCCC---CCHHHHHHHHHHCCCEEEEEECCC-C-----CHHHHHHHHCCCCHHCE T ss_conf 702399875---56898599997179876---638999999998798899996374-7-----98999998559737568 Q ss_pred EEECCHHHHHHHHHH Q ss_conf 882998999999999 Q gi|254780388|r 429 FEANSTHELNKIFRD 443 (458) Q Consensus 429 y~a~~~~eL~~aF~~ 443 (458) T Consensus 164 f~v~~F~~l~~l~~~ 178 (224) T cd01475 164 FYVEDFSTIEELTKK 178 (224) T ss_pred EEECCHHHHHHHHHH T ss_conf 994798899999999

HHsearch alignment for GI: 254780388 and conserved domain: cd01475