HHsearch alignment for GI: 254780388 and conserved domain: cd01476
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.92 E-value=5.9e-08 Score=69.17 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=85.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHCC
Q ss_conf 777665221123467756665201211006776655655768121005666656412567-7777645889999986236
Q gi|254780388|r 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENE-MGSTAINDAMQTAYDTIIS 352 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~T~~~~gl~~g~~~Ls~ 352 (458)
T Consensus 20 ~k~F~~~lv~~f~i---~~~~~rVgvv~ys~~~~~~i~f~l~~~-~~~~~l~~~I~~i~~~~g~T~tg~AL~~a~~~~~~ 95 (163)
T cd01476 20 YKKYIERIVEGLEI---GPTATRVALITYSGRGRQRVRFNLPKH-NDGEELLEKVDNLRFIGGTTATGAAIEVALQQLDP 95 (163)
T ss_pred HHHHHHHHHHHHCC---CCCCEEEEEEEECCCCCEEEEECCCCC-CCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999996146---888538999996698707888757777-99999999997520368985489999999997214
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHCC-CCCEE
Q ss_conf 6665444456677750699999606688885408999999998-79689999943788743117899986068-98378
Q gi|254780388|r 353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKS-QGIRIMTIAFSVNKTQQEKARYFLSNCAS-PNSFF 429 (458)
Q Consensus 353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~-~gI~IytI~f~~~~~~~~~~~~~lk~CAs-~~~yy 429 (458)
T Consensus 96 ~~g-------~R~~~~kv~vviTDG~s~d---~~~~~a~~lr~~~gv~v~avgVG~~~~---~d~~eL~~Ia~~~~~Vf 161 (163)
T cd01476 96 SEG-------RREGIPKVVVVLTDGRSHD---DPEKQARILRAVPNIETFAVGTGDPGT---VDTEELHSITGNEDHIF 161 (163)
T ss_pred HCC-------CCCCCEEEEEEEECCCCCC---CHHHHHHHHHHHCCCEEEEEEECCCCC---CCHHHHHHHCCCCCCCC
T ss_conf 206-------7899616999981898766---488999999970998999998388650---15999998649972545