HHsearch alignment for GI: 254780388 and conserved domain: cd01480

>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.46  E-value=5.4e-12  Score=94.97  Aligned_cols=151  Identities=19%  Similarity=0.210  Sum_probs=101.9

Q ss_pred             HHHHHHHHHCCCCCC---CCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHH
Q ss_conf             777665221123467---75666520121100677665565576812100566665641256-77777645889999986
Q gi|254780388|r  274 VRDALASVIRSIKKI---DNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN-EMGSTAINDAMQTAYDT  349 (458)
Q Consensus       274 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~T~~~~gl~~g~~~  349 (458)
T Consensus        23 ~k~Fv~~lv~~f~~~~~~~i~~~~~rVgvv~ys~~~~~~~~~~~~--~~~~~~l~~~I~~i~y~gG~T~tg~AL~~a~~~  100 (186)
T cd01480          23 TKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRD--IRNYTSLKEAVDNLEYIGGGTFTDCALKYATEQ  100 (186)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEECCCCC--CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             999999999998530134568774389899855842798604777--588999999997501358986299999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC-CCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC-CCC
Q ss_conf             236666544445667775069999960668888-540899999999879689999943788743117899986068-983
Q gi|254780388|r  350 IISSNEDEVHRMKNNLEAKKYIVLLTDGENTQD-NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS-PNS  427 (458)
Q Consensus       350 Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~-~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs-~~~  427 (458)
T Consensus       101 ~~~~~---------r~~~~kvlvliTDG~S~~~~~~~~~~aa~~lr~~GV~ifaVGVG~~~------~~eL~~IAs~p~~  165 (186)
T cd01480         101 LLEGS---------HQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQN------EEPLSRIACDGKS  165 (186)
T ss_pred             HHHCC---------CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC------HHHHHHHHCCCCC
T ss_conf             86136---------78985389998458766674066999999999879899999947488------7999998589973


Q ss_pred             EEEECCHHHHHHHH
Q ss_conf             78829989999999
Q gi|254780388|r  428 FFEANSTHELNKIF  441 (458)
Q Consensus       428 yy~a~~~~eL~~aF  441 (458)
T Consensus       166 ~~~~~~f~~L~~~~  179 (186)
T cd01480         166 ALYRENFAELLWSF  179 (186)
T ss_pred             EEEECCHHHHHCCH
T ss_conf             89736899870111