HHsearch alignment for GI: 254780388 and conserved domain: cd01480
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.46 E-value=5.4e-12 Score=94.97 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=101.9
Q ss_pred HHHHHHHHHCCCCCC---CCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHH
Q ss_conf 777665221123467---75666520121100677665565576812100566665641256-77777645889999986
Q gi|254780388|r 274 VRDALASVIRSIKKI---DNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN-EMGSTAINDAMQTAYDT 349 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~T~~~~gl~~g~~~ 349 (458)
T Consensus 23 ~k~Fv~~lv~~f~~~~~~~i~~~~~rVgvv~ys~~~~~~~~~~~~--~~~~~~l~~~I~~i~y~gG~T~tg~AL~~a~~~ 100 (186)
T cd01480 23 TKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRD--IRNYTSLKEAVDNLEYIGGGTFTDCALKYATEQ 100 (186)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEECCCCC--CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 999999999998530134568774389899855842798604777--588999999997501358986299999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC-CCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC-CCC
Q ss_conf 236666544445667775069999960668888-540899999999879689999943788743117899986068-983
Q gi|254780388|r 350 IISSNEDEVHRMKNNLEAKKYIVLLTDGENTQD-NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS-PNS 427 (458)
Q Consensus 350 Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~-~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs-~~~ 427 (458)
T Consensus 101 ~~~~~---------r~~~~kvlvliTDG~S~~~~~~~~~~aa~~lr~~GV~ifaVGVG~~~------~~eL~~IAs~p~~ 165 (186)
T cd01480 101 LLEGS---------HQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQN------EEPLSRIACDGKS 165 (186)
T ss_pred HHHCC---------CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC------HHHHHHHHCCCCC
T ss_conf 86136---------78985389998458766674066999999999879899999947488------7999998589973
Q ss_pred EEEECCHHHHHHHH
Q ss_conf 78829989999999
Q gi|254780388|r 428 FFEANSTHELNKIF 441 (458)
Q Consensus 428 yy~a~~~~eL~~aF 441 (458)
T Consensus 166 ~~~~~~f~~L~~~~ 179 (186)
T cd01480 166 ALYRENFAELLWSF 179 (186)
T ss_pred EEEECCHHHHHCCH
T ss_conf 89736899870111