HHsearch alignment for GI: 254780388 and conserved domain: cd01481

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.06  E-value=1.2e-08  Score=73.56  Aligned_cols=141  Identities=16%  Similarity=0.197  Sum_probs=91.8

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHC
Q ss_conf             77766522112346775666520121100677665565576812100566665641256777--7764588999998623
Q gi|254780388|r  274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMG--STAINDAMQTAYDTII  351 (458)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g--~T~~~~gl~~g~~~Ls  351 (458)
T Consensus        21 ~k~Fv~~lv~~f~i---~~~~trVgvi~ys~~~~~~f~l~~--~-~~~~~l~~~I~~i~~~~g~~t~tg~AL~~a~~~~f   94 (165)
T cd01481          21 IRDFIERIVQSLDV---GPDKIRVAVVQFSDTPRPEFYLNT--H-STKADVLGAVRRLRLRGGSQLNTGSALDYVVKNLF   94 (165)
T ss_pred             HHHHHHHHHHHHCC---CCCCEEEEEEEECCCEEEEEECCC--C-CCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHC
T ss_conf             99999999996046---888627889998686479997677--6-89999999998410458984369999999999716


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC-CCCEEE
Q ss_conf             6666544445667775069999960668888540899999999879689999943788743117899986068-983788
Q gi|254780388|r  352 SSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS-PNSFFE  430 (458)
Q Consensus       352 ~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs-~~~yy~  430 (458)
T Consensus        95 ~~~~g~R~----r~~v~kvlvviTdG~s~---d~~~~~a~~lr~~gV~i~aVGvg~-~~-----~~eL~~IAs~p~~vf~  161 (165)
T cd01481          95 TKSAGSRI----EEGVPQFLVLITGGKSQ---DDVERPAVALKRAGIVPFAIGARN-AD-----LAELQQIAFDPSFVFQ  161 (165)
T ss_pred             CCCCCCCC----CCCCCEEEEEEECCCCC---CHHHHHHHHHHHCCCEEEEEECCC-CC-----HHHHHHHHCCCCCEEE
T ss_conf             75678875----57998699998489885---378999999998897899996897-99-----9999998589877697


Q ss_pred             ECC
Q ss_conf             299
Q gi|254780388|r  431 ANS  433 (458)
Q Consensus       431 a~~  433 (458)
T Consensus       162 ~~~  164 (165)
T cd01481         162 VSD  164 (165)
T ss_pred             CCC
T ss_conf             389