HHsearch alignment for GI: 254780388 and conserved domain: cd01481
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.06 E-value=1.2e-08 Score=73.56 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=91.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHC
Q ss_conf 77766522112346775666520121100677665565576812100566665641256777--7764588999998623
Q gi|254780388|r 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMG--STAINDAMQTAYDTII 351 (458)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g--~T~~~~gl~~g~~~Ls 351 (458)
T Consensus 21 ~k~Fv~~lv~~f~i---~~~~trVgvi~ys~~~~~~f~l~~--~-~~~~~l~~~I~~i~~~~g~~t~tg~AL~~a~~~~f 94 (165)
T cd01481 21 IRDFIERIVQSLDV---GPDKIRVAVVQFSDTPRPEFYLNT--H-STKADVLGAVRRLRLRGGSQLNTGSALDYVVKNLF 94 (165)
T ss_pred HHHHHHHHHHHHCC---CCCCEEEEEEEECCCEEEEEECCC--C-CCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHC
T ss_conf 99999999996046---888627889998686479997677--6-89999999998410458984369999999999716
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC-CCCEEE
Q ss_conf 6666544445667775069999960668888540899999999879689999943788743117899986068-983788
Q gi|254780388|r 352 SSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS-PNSFFE 430 (458)
Q Consensus 352 ~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs-~~~yy~ 430 (458)
T Consensus 95 ~~~~g~R~----r~~v~kvlvviTdG~s~---d~~~~~a~~lr~~gV~i~aVGvg~-~~-----~~eL~~IAs~p~~vf~ 161 (165)
T cd01481 95 TKSAGSRI----EEGVPQFLVLITGGKSQ---DDVERPAVALKRAGIVPFAIGARN-AD-----LAELQQIAFDPSFVFQ 161 (165)
T ss_pred CCCCCCCC----CCCCCEEEEEEECCCCC---CHHHHHHHHHHHCCCEEEEEECCC-CC-----HHHHHHHHCCCCCEEE
T ss_conf 75678875----57998699998489885---378999999998897899996897-99-----9999998589877697
Q ss_pred ECC
Q ss_conf 299
Q gi|254780388|r 431 ANS 433 (458)
Q Consensus 431 a~~ 433 (458)
T Consensus 162 ~~~ 164 (165)
T cd01481 162 VSD 164 (165)
T ss_pred CCC
T ss_conf 389