HHsearch alignment for GI: 254780388 and conserved domain: cd01482

>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.94  E-value=6.1e-08  Score=69.08  Aligned_cols=139  Identities=17%  Similarity=0.237  Sum_probs=86.2

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHCC
Q ss_conf             7776652211234677566652012110067766556557681210056666564125-677777645889999986236
Q gi|254780388|r  274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDE-NEMGSTAINDAMQTAYDTIIS  352 (458)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~g~T~~~~gl~~g~~~Ls~  352 (458)
T Consensus        21 ~k~fi~~lv~~f~i---~~~~~rvgvv~ys~~~~~~~~l~~~~---~~~~l~~~i~~i~~~~g~t~~~~AL~~~~~~~f~   94 (164)
T cd01482          21 VRSFLSSVVEAFEI---GPDGVQVGLVQYSDDPRTEFDLNAYT---SKEDVLAAIKNLPYKGGNTRTGKALTHVREKNFT   94 (164)
T ss_pred             HHHHHHHHHHHCCC---CCCCEEEEEEEECCCCEEEECCCCCC---CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             99999999996476---88862899999447512787343469---9899999986402668997289999999998615


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC-C--CCEE
Q ss_conf             666544445667775069999960668888540899999999879689999943788743117899986068-9--8378
Q gi|254780388|r  353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS-P--NSFF  429 (458)
Q Consensus       353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs-~--~~yy  429 (458)
T Consensus        95 ~~~g------~R~~~~kvlvliTDG~s~---d~~~~~a~~lr~~gv~i~~VGVg~-~---~--~~eL~~IAs~P~~~hvf  159 (164)
T cd01482          95 PDAG------ARPGVPKVVILITDGKSQ---DDVELPARVLRNLGVNVFAVGVKD-A---D--ESELKMIASKPSETHVF  159 (164)
T ss_pred             HHCC------CCCCCCEEEEEECCCCCC---CHHHHHHHHHHHCCCEEEEEECCC-C---C--HHHHHHHHCCCCHHCEE
T ss_conf             0028------988886079996079884---338999999998893899997883-7---8--99999996898566179


Q ss_pred             EECC
Q ss_conf             8299
Q gi|254780388|r  430 EANS  433 (458)
Q Consensus       430 ~a~~  433 (458)
T Consensus       160 ~~~~  163 (164)
T cd01482         160 NVAD  163 (164)
T ss_pred             ECCC
T ss_conf             7479