HHsearch alignment of GI: 254780388 and MMDB domain: 1jey_B_1-236_463-505
>1jey_B (B:1-236,B:463-505) KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens}
Probab=99.25 E-value=2.5e-10 Score=83.89 Aligned_cols=169 Identities=11% Similarity=-0.011 Sum_probs=107.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC----------CCHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 4330667776652211234677566652012110067766556557----------68121005666656412567-777
Q gi|254780388|r 268 IKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFS----------WGVHKLIRTIVKTFAIDENE-MGS 336 (458)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~~~-~g~ 336 (458)
.++++..+.++..++.......+ ..+.+.+.|+.......... ..........+...++.+.+ .|+
T Consensus 28 ~tr~~~ak~a~~~li~~~~~~~~---~d~vgiv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (279)
T 1jey_B 28 ESPFEQAKKVITMFVQRQVFAEN---KDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQ 104 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTC---CCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCC---CCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 99799999999999998723899---987999998347888755555675654985558998999999998644688778
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-H
Q ss_conf 764588999998623666654444566777506999996066888854089999999987968999994378874311-7
Q gi|254780388|r 337 TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEK-A 415 (458)
Q Consensus 337 T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~-~ 415 (458)
|+...||..+...|..... ..+...++||++|||.++........+++.+|+.||+||+|+++........ .
T Consensus 105 T~~~~aL~~A~~~l~~~~~-------~~~~~~~~IiliTDG~~~~~~~~~~~~~~~l~~~~i~i~~Igig~~~~~~~~~~ 177 (279)
T 1jey_B 105 ADFLDALIVSMDVIQHETI-------GKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGD 177 (279)
T ss_dssp CCHHHHHHHHHHHHHHHSS-------SSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCCC-------
T ss_pred CCHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
T ss_conf 7879999999999998750-------465454389998079988687899999999986596599961466653546642
Q ss_pred HHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHH
Q ss_conf 899986068--98378829989999999999875
Q gi|254780388|r 416 RYFLSNCAS--PNSFFEANSTHELNKIFRDRIGN 447 (458)
Q Consensus 416 ~~~lk~CAs--~~~yy~a~~~~eL~~aF~~~i~~ 447 (458)
...++.++. .+.+|.+....++...++ .+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 210 (279)
T 1jey_B 178 RGDGPFRLGGHGPSFPLKGITEQQKEGLE-IVKM 210 (279)
T ss_dssp ---CCCCTTCSSCCCCTTTSCHHHHHHHH-HHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCH-HHHH
T ss_conf 33302331124554312343211233200-1121