HHsearch alignment of GI: 254780388 and MMDB domain: 2b2x_A_
>2b2x_A (A:) Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus}
Probab=99.19 E-value=1.1e-09 Score=79.84 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=104.3
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
Q ss_conf 66652012110067766556557681210056666564125677777645889999986236666544445667775069
Q gi|254780388|r 291 VNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ 370 (458)
.....+.+...|+.......++............. ........|+|.....+......+..... .......|+
T Consensus 55 ~~~~~~v~ii~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 127 (223)
T 2b2x_A 55 GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAA-NKIVQRGGRQTMTALGIDTARKEAFTEAR------GARRGVKKV 127 (223)
T ss_dssp STTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHH-TTCCCCCCSSCCHHHHHHHHHHTTSSGGG------TCCTTSEEE
T ss_pred CCCCEEEEEEEEECCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCEE
T ss_conf 88860799999740057852754556799999999-75454433201015778777776224323------788787337
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC----CCHHHHHHHHHCC--CCC-EEEECCHHHHHHHHHH
Q ss_conf 99996066888854089999999987968999994378874----3117899986068--983-7882998999999999
Q gi|254780388|r 371 IVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQ----QEKARYFLSNCAS--PNS-FFEANSTHELNKIFRD 443 (458)
Q Consensus 371 iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~----~~~~~~~lk~CAs--~~~-yy~a~~~~eL~~aF~~ 443 (458)
++++|||..+.. ......++.+|+++|+||+|+++.+.+. .......|+.+|+ .+. +|.+.+.++|.++|++
T Consensus 128 ivliTDG~~~~~-~~~~~~~~~~~~~~i~i~~igig~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~L~~~~~~ 206 (223)
T 2b2x_A 128 MVIVTDGESHDN-YRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKA 206 (223)
T ss_dssp EEEEESSCCTTG-GGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHH
T ss_pred EEEEECCCCCCC-HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH
T ss_conf 999846887762-3389999999753987999997066554433432479999998569986618983899999999999
Q ss_pred HHHHHH
Q ss_conf 987587
Q gi|254780388|r 444 RIGNEI 449 (458)
Q Consensus 444 ~i~~~~ 449 (458)
++....
T Consensus 207 i~~~~~ 212 (223)
T 2b2x_A 207 LGERIF 212 (223)
T ss_dssp HHTTTC
T ss_pred HHHHHC
T ss_conf 999862