HHsearch alignment of GI: 254780388 and MMDB domain: 2nvo_A_53-64_359-535
>2nvo_A (A:53-64,A:359-535) RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.79 E-value=1.5e-07 Score=66.11 Aligned_cols=125 Identities=6% Similarity=-0.003 Sum_probs=87.9
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 20121100677665565576812100566665641256777776458899999862366665444456677750699999
Q gi|254780388|r 295 VRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLL 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~ 374 (458)
.+.+...|+.......+.+.... .....+....+.|+|+...+|..+.+.+.. .|.++++
T Consensus 58 ~~v~li~F~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~T~~~~al~~a~~~~~~---------------~~~vili 117 (189)
T 2nvo_A 58 PDALTMGFAEQFRPLGITPRDTL-----ESAMQKAQSVSFGGTDCAQPILWAAQERLD---------------VDTFVVY 117 (189)
T ss_dssp SEEEEEEEBSSEEECCCCTTCCH-----HHHHHHTCCSSBCCCCTTHHHHHHHHTTCC---------------CSEEEEE
T ss_pred CCCEEEEECCCCEECCCCCCCHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHCCCC---------------CCEEEEE
T ss_conf 98179987895177588887329-----999999854578985699999999846455---------------8989998
Q ss_pred ECCCCCCCCCH---HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 60668888540---8999999998796899999437887431178999860689837882998999999999987
Q gi|254780388|r 375 TDGENTQDNEE---GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIG 446 (458)
Q Consensus 375 TDG~n~~~~~~---~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i~ 446 (458)
|||+.+..... .....+.+|..+|.|++|+++...... ..-...+.++.+....++.+.+.++.+
T Consensus 118 tDg~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~ 185 (189)
T 2nvo_A 118 TDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATEFSI-------ADPQRRDMLDVVGFDAAAPNVMTAFAR 185 (189)
T ss_dssp ESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSCCCC-------SCTTCSSEEEEEECCTTHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-------CCCCCCCEEEEECCCHHHHHHHHHHHC
T ss_conf 07997789999999999999852899759999803888887-------888999947872688899999999866