HHsearch alignment of GI: 254780388 and MMDB domain: 2nvo_A_53-64_359-535

>2nvo_A (A:53-64,A:359-535) RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.79  E-value=1.5e-07  Score=66.11  Aligned_cols=125  Identities=6%  Similarity=-0.003  Sum_probs=87.9

Q ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             20121100677665565576812100566665641256777776458899999862366665444456677750699999
Q gi|254780388|r  295 VRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLL  374 (458)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~  374 (458)
                      .+.+...|+.......+.+....     .....+....+.|+|+...+|..+.+.+..               .|.++++
T Consensus        58 ~~v~li~F~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~T~~~~al~~a~~~~~~---------------~~~vili  117 (189)
T 2nvo_A           58 PDALTMGFAEQFRPLGITPRDTL-----ESAMQKAQSVSFGGTDCAQPILWAAQERLD---------------VDTFVVY  117 (189)
T ss_dssp             SEEEEEEEBSSEEECCCCTTCCH-----HHHHHHTCCSSBCCCCTTHHHHHHHHTTCC---------------CSEEEEE
T ss_pred             CCCEEEEECCCCEECCCCCCCHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHCCCC---------------CCEEEEE
T ss_conf             98179987895177588887329-----999999854578985699999999846455---------------8989998


Q ss_pred             ECCCCCCCCCH---HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf             60668888540---8999999998796899999437887431178999860689837882998999999999987
Q gi|254780388|r  375 TDGENTQDNEE---GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIG  446 (458)
Q Consensus       375 TDG~n~~~~~~---~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i~  446 (458)
                      |||+.+.....   .....+.+|..+|.|++|+++......       ..-...+.++.+....++.+.+.++.+
T Consensus       118 tDg~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~  185 (189)
T 2nvo_A          118 TDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATEFSI-------ADPQRRDMLDVVGFDAAAPNVMTAFAR  185 (189)
T ss_dssp             ESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSCCCC-------SCTTCSSEEEEEECCTTHHHHHHHHHT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-------CCCCCCCEEEEECCCHHHHHHHHHHHC
T ss_conf             07997789999999999999852899759999803888887-------888999947872688899999999866