Query gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 458 No_of_seqs 119 out of 522 Neff 10.4 Searched_HMMs 33803 Date Wed Jun 1 12:40:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780388.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ww8_A RRGA, cell WALL surfac 99.9 5.4E-23 1.6E-27 164.8 11.5 166 268-450 25-268 (269) 2 >3hrz_D Complement factor B; s 99.5 1.7E-12 5E-17 97.8 15.8 165 274-450 66-251 (259) 3 >1rrk_A Complement factor B; B 99.5 2.4E-12 7.1E-17 96.8 14.1 169 272-451 20-208 (214) 4 >1shu_X Anthrax toxin receptor 99.4 6E-12 1.8E-16 94.3 14.4 137 293-446 40-179 (182) 5 >2odp_A Complement C2; C3/C5 c 99.4 6.5E-13 1.9E-17 100.4 8.5 171 272-449 28-214 (224) 6 >3ibs_A Conserved hypothetical 99.4 1.3E-11 3.9E-16 92.1 14.9 164 268-452 31-216 (218) 7 >3gxb_A VON willebrand factor; 99.4 7.5E-12 2.2E-16 93.7 12.1 153 273-448 22-174 (184) 8 >1q0p_A Complement factor B; V 99.4 5.4E-11 1.6E-15 88.2 15.0 166 272-448 34-219 (223) 9 >1atz_A VON willebrand factor; 99.3 3.4E-11 1E-15 89.5 12.4 160 272-450 24-185 (189) 10 >1jey_A KU70; double-strand DN 99.3 4.8E-11 1.4E-15 88.5 12.7 168 268-447 57-249 (252) 11 >1n3y_A Integrin alpha-X; alph 99.3 2.9E-10 8.7E-15 83.5 14.7 165 272-450 28-195 (198) 12 >1jey_B KU80; double-strand DN 99.3 2.5E-10 7.5E-15 83.9 13.4 169 268-447 28-210 (279) 13 >1ijb_A VON willebrand factor; 99.2 1.6E-09 4.7E-14 78.8 17.1 159 273-448 33-195 (202) 14 >3k6s_A Integrin alpha-X; hete 99.2 5.2E-11 1.5E-15 88.3 8.5 162 272-447 25-189 (191) 15 >2b2x_A Integrin alpha-1; comp 99.2 1.1E-09 3.2E-14 79.8 14.0 151 291-449 55-212 (223) 16 >1mf7_A Integrin alpha M; cell 99.2 8.4E-10 2.5E-14 80.6 12.9 164 272-449 24-190 (194) 17 >1v7p_C Integrin alpha-2; snak 99.2 2.3E-09 6.8E-14 77.8 14.8 152 291-450 39-197 (200) 18 >1pt6_A Integrin alpha-1; X-RA 99.1 2.8E-09 8.4E-14 77.2 13.0 152 291-450 40-198 (213) 19 >1mjn_A Integrin alpha-L; ross 98.9 3.9E-10 1.2E-14 82.7 3.1 156 271-447 20-178 (179) 20 >1yvr_A RO autoantigen, 60-kDa 98.9 1.7E-07 4.9E-12 65.9 14.2 125 294-445 43-170 (174) 21 >2vdr_B Integrin beta-3; cell 98.8 4.5E-07 1.3E-11 63.1 14.4 120 319-447 89-241 (242) 22 >2nvo_A RO sixty-related prote 98.8 1.5E-07 4.6E-12 66.1 12.0 125 295-446 58-185 (189) 23 >2iue_A Pactolus I-domain; mem 98.5 7.3E-09 2.2E-13 74.6 -1.3 158 273-442 22-180 (212) 24 >3fcs_B Integrin beta-3; beta 98.4 1.2E-05 3.4E-10 54.1 12.7 117 319-447 90-242 (244) 25 >3k6s_B Integrin beta-2; heter 98.2 3.6E-06 1.1E-10 57.4 6.1 114 321-446 91-238 (241) 26 >1tjy_A Sugar transport protei 47.0 9.8 0.00029 16.3 1.6 75 369-445 5-82 (165) 27 >3lft_A Uncharacterized protei 46.0 15 0.00045 15.0 7.7 80 365-449 14-93 (118) 28 >2e4u_A Metabotropic glutamate 44.3 16 0.00048 14.9 9.3 79 365-445 15-96 (177) 29 >3g1w_A Sugar ABC transporter; 37.6 21 0.00061 14.2 4.1 16 388-403 77-92 (171) 30 >3dhf_A Nicotinamide phosphori 36.4 17 0.00049 14.8 1.5 44 363-409 195-238 (243) 31 >1p5t_A DOK1, docking protein 33.0 24 0.00072 13.7 3.2 32 420-451 75-108 (127) 32 >3ks9_A Mglur1, metabotropic g 31.7 26 0.00076 13.6 8.7 80 366-447 16-99 (190) 33 >2gb3_A Aspartate aminotransfe 31.4 26 0.00077 13.6 3.5 19 430-449 145-163 (173) 34 >1j0w_A Downstream of tyrosine 30.2 27 0.0008 13.4 3.7 31 420-450 68-100 (103) 35 >2fn9_A Ribose ABC transporter 29.8 28 0.00082 13.4 3.5 19 387-405 73-91 (150) 36 >3d02_A Putative LACI-type tra 28.6 29 0.00086 13.3 5.0 76 368-445 5-83 (154) 37 >2ioy_A Periplasmic sugar-bind 28.1 29 0.00087 13.2 3.0 16 388-403 73-88 (150) 38 >1o98_A 2,3-bisphosphoglycerat 27.3 30 0.0009 13.1 5.7 10 373-382 74-83 (238) 39 >1qqg_A IRS-1, insulin recepto 26.8 31 0.00092 13.1 3.7 32 420-451 91-124 (131) 40 >2v76_A Docking protein 1; alt 26.3 32 0.00094 13.0 2.7 30 420-449 73-104 (107) 41 >1q15_A CARA; CMPR, (2S,5S)-5- 24.4 34 0.001 12.8 6.5 17 390-406 19-35 (223) 42 >3i45_A Twin-arginine transloc 23.8 35 0.001 12.7 5.7 75 365-444 16-95 (200) 43 >2w8t_A SPT, serine palmitoylt 23.5 31 0.00091 13.1 1.0 63 383-452 74-136 (145) 44 >3igz_B Cofactor-independent p 22.6 37 0.0011 12.6 6.2 36 370-405 39-75 (239) 45 >3hut_A Putative branched-chai 21.7 39 0.0011 12.4 8.8 76 365-445 14-92 (119) No 1 >>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} (A:221-279,A:318-447,A:506-585) Probab=99.90 E-value=5.4e-23 Score=164.81 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=113.7 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHH---------HHHHHHHHHHHHCCCCCCCCC Q ss_conf 43306677766522112346775666520121100677665565576812---------100566665641256777776 Q gi|254780388|r 268 IKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVH---------KLIRTIVKTFAIDENEMGSTA 338 (458) Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~g~T~ 338 (458) ..+++..+.....++...... ...+.+.+.|+..........+... ..+...+...++.+.+.|+|+ T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~----~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~i~~~~~~GgT~ 100 (269) T 2ww8_A 25 ARRAERAGEATRSLIDKITSD----SENRVALVTYASTIDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATF 100 (269) T ss_dssp CCHHHHHHHHHHHHHHHHHTS----TTCEEEEEEESSSBBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCC T ss_pred CEEEEECCCCEEEEEEEEEEC----CCCEEEEEEECCCCCCCEEEEEECCCCEEEECCEEEEEECCCCCCCEEECCCCEE T ss_conf 305652264504642577753----7860578840231042025554125411330310123210245641010146246 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC------------------------------------- Q ss_conf 4588999998623666654444566777506999996066888------------------------------------- Q gi|254780388|r 339 INDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQ------------------------------------- 381 (458) Q Consensus 339 ~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~------------------------------------- 381 (458) .+.||.|+++.+.+.+ .....|+|||||||.++. T Consensus 101 ~~~AL~~a~~~l~~~~---------~~~~~kvIiliTDG~~~~~~~~~~~~~~~~~~~~v~i~~i~~~~~~~~~~~~~~~ 171 (269) T 2ww8_A 101 TQKALMKADEILTQQA---------RQNSQKVIFHITDGVPTMSYPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDF 171 (269) T ss_dssp HHHHHHHHHHHHHHHS---------CSSSEEEEEEEESSCCSEECCBCCCCSTTCCCHHHHHHHHHHTSTTSSSCCGGGB T ss_pred EEEECCCCCEEEEECC---------CCCCCEEEEECCCCCCCEEECCCCCCCCCCEEEECCCEEEEEECCCCCEEEECCE T ss_conf 6530022414776215---------7765204786156631000001344541004763131056651121120661110 Q ss_pred ----------------------------CCCHHHHHHHHHHHCCCEEEEEEECCCCCCC---CHHHHHHHHHCC-CCCEE Q ss_conf ----------------------------8540899999999879689999943788743---117899986068-98378 Q gi|254780388|r 382 ----------------------------DNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ---EKARYFLSNCAS-PNSFF 429 (458) Q Consensus 382 ----------------------------~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~---~~~~~~lk~CAs-~~~yy 429 (458) .+.++..+|+++|++||+||||||+.+++.. +.++++||+||| |.||| T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~k~~~i~i~ti~~~~~~~~~~~~~~~~~~l~~cas~~~~y~ 251 (269) T 2ww8_A 172 ITQATSGEHTIVRGDGQSNSNTAKITNHGDPTRWYYNGNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYT 251 (269) T ss_dssp CCCCTTCGGGTCEECSSCTCSSCCBCBSHHHHHHHHHHHTGGGCCEEEEEEESCCCTTTSCHHHHHHHHHHTSSSGGGEE T ss_pred EEEECCCCCEEECCCCEECCCCEEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEE T ss_conf 12310122102037742753205762047430578875204676303577677156421002343057756611665326 Q ss_pred EECCHHHHHHHHHHHHHHHHH Q ss_conf 829989999999999875875 Q gi|254780388|r 430 EANSTHELNKIFRDRIGNEIF 450 (458) Q Consensus 430 ~a~~~~eL~~aF~~~i~~~~~ 450 (458) +|. ||.++|++ |+++++ T Consensus 252 ~~~---~~~~~f~~-ia~~~~ 268 (269) T 2ww8_A 252 NVT---DTTKILEQ-LNRYFH 268 (269) T ss_dssp EES---SGGGHHHH-HHHHHT T ss_pred EEC---CCCCEECC-CCCCCE T ss_conf 405---66511113-355412 No 2 >>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement system, convertase, complement alternate pathway, complement pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457) Probab=99.51 E-value=1.7e-12 Score=97.76 Aligned_cols=165 Identities=15% Similarity=0.150 Sum_probs=109.9 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-----HCCCCCCCCCCHHHHHHHHH Q ss_conf 7776652211234677566652012110067766556557681210056666564-----12567777764588999998 Q gi|254780388|r 274 VRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFA-----IDENEMGSTAINDAMQTAYD 348 (458) Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~g~T~~~~gl~~g~~ 348 (458) .+.....+...... .....+.+...|+.......++....... ...++..+ ....+.|+|+...|+..+.+ T Consensus 66 ~k~~~~~~~~~~~~---~~~~~~v~lv~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~T~~~~al~~a~~ 141 (259) T 3hrz_D 66 AKKCLVNLIEKVAS---YGVKPRYGLVTYATYPKIWVKVSEADSSN-ADWVTKQLNEINYEDHKLKSGTNTKKALQAVYS 141 (259) T ss_dssp HHHHHHHHHHHHHH---TTCCCEEEEEEESSSEEEEECTTSGGGGC-HHHHHHHHTTCCGGGGSSSCCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCC---CCCCCEEEEEEECCCEEEEEECCCCCCCC-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999986557---88986899999679516998547777678-999999997276656777775689999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHH------------HHHHCCCEEEEEEECCCCCCCCHHH Q ss_conf 6236666544445667775069999960668888540899999------------9998796899999437887431178 Q gi|254780388|r 349 TIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICN------------KAKSQGIRIMTIAFSVNKTQQEKAR 416 (458) Q Consensus 349 ~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~------------~~K~~gI~IytI~f~~~~~~~~~~~ 416 (458) .|........ ...++..|++||+|||+.+..........+ .+|++||+||+||++...+ . T Consensus 142 ~l~~~~~~~~---~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~igvg~~~~-----~ 213 (259) T 3hrz_D 142 MMSWPDDVPP---EGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN-----Q 213 (259) T ss_dssp HHCCC--CCC---TTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCC-----H T ss_pred HHHHHCCCCC---CCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-----H T ss_conf 7542102566---6567998799998389766788840233322113456788999987890999997888689-----9 Q ss_pred HHHHHHCC--CC--CEEEECCHHHHHHHHHHHHHHHHH Q ss_conf 99986068--98--378829989999999999875875 Q gi|254780388|r 417 YFLSNCAS--PN--SFFEANSTHELNKIFRDRIGNEIF 450 (458) Q Consensus 417 ~~lk~CAs--~~--~yy~a~~~~eL~~aF~~~i~~~~~ 450 (458) ..|+..|+ .| +||.+.+.++|.++|++++....+ T Consensus 214 ~~L~~iA~~~~g~~~~~~~~~~~~L~~~~~~i~~~i~~ 251 (259) T 3hrz_D 214 VNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQS 251 (259) T ss_dssp HHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC T ss_conf 99999974889873399959999999987543220135 No 3 >>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} (A:1-214) Probab=99.47 E-value=2.4e-12 Score=96.82 Aligned_cols=169 Identities=13% Similarity=0.110 Sum_probs=114.7 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHH----HHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 6677766522112346775666520121100677665565576812100----566665641256777776458899999 Q gi|254780388|r 272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI----RTIVKTFAIDENEMGSTAINDAMQTAY 347 (458) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~g~T~~~~gl~~g~ 347 (458) +..+..+..++..+.. .....+.+...|++......++........ ............+.|+|+...+|.++. T Consensus 20 ~~~k~~~~~~i~~l~~---~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~ 96 (214) T 1rrk_A 20 TGAKKVLVNLIEKVAS---YGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVY 96 (214) T ss_dssp HHHHHHHHHHHHHHHH---TTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCC---CCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH T ss_conf 9999999999984767---8996199999988816899817987756899999999717557876888768999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHH------------HHHHHHCCCEEEEEEECCCCCCCCHH Q ss_conf 862366665444456677750699999606688885408999------------99999879689999943788743117 Q gi|254780388|r 348 DTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAI------------CNKAKSQGIRIMTIAFSVNKTQQEKA 415 (458) Q Consensus 348 ~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~------------C~~~K~~gI~IytI~f~~~~~~~~~~ 415 (458) ..+........ ...++..|++||+|||..+......... +..+|..||.||+|+++...+ T Consensus 97 ~~~~~~~~~~~---~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igig~~~~----- 168 (214) T 1rrk_A 97 SMMSWPDDVPP---EGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN----- 168 (214) T ss_dssp HHHCCC---------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCC----- T ss_pred HHHHHHHCCCC---CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC----- T ss_conf 99764112476---5556887699999797566789848999999987888888887876794999834777579----- Q ss_pred HHHHHHHCC--CC--CEEEECCHHHHHHHHHHHHHHHHHH Q ss_conf 899986068--98--3788299899999999998758753 Q gi|254780388|r 416 RYFLSNCAS--PN--SFFEANSTHELNKIFRDRIGNEIFE 451 (458) Q Consensus 416 ~~~lk~CAs--~~--~yy~a~~~~eL~~aF~~~i~~~~~~ 451 (458) ...|+..|. .| +||.+.+.++|.++|++++.+..+. T Consensus 169 ~~~l~~ia~~~~g~~~~~~~~~~~~l~~~~~~i~~~l~~~ 208 (214) T 1rrk_A 169 QVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQSL 208 (214) T ss_dssp HHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGGGT T ss_pred HHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHCCCCC T ss_conf 9999977525787656166599999999998764324543 No 4 >>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} (X:) Probab=99.44 E-value=6e-12 Score=94.28 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=104.8 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 65201211006776655655768121005666656412567777764588999998623666654444566777506999 Q gi|254780388|r 293 DTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIV 372 (458) Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ii 372 (458) ...+.....|+.......++...... .......+....+.|+|+...++..++..+.... .....|++| T Consensus 40 ~~~~~~iv~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~t~~~~al~~a~~~~~~~~---------~~~~~~~~i 108 (182) T 1shu_X 40 PEMRLSFIVFSSQATIILPLTGDRGK--ISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAG---------GLKTSSIII 108 (182) T ss_dssp TTEEEEEEEESSSEEEEEEEECCHHH--HHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHT---------GGGSCEEEE T ss_pred CCCEEEEEEECCCEEECCCCCCCHHH--HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC---------CCCCCCEEE T ss_conf 99779999951540262787787999--9999877653046786257899999998764211---------368861799 Q ss_pred EEECCCCCCCCC-HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHH Q ss_conf 996066888854-0899999999879689999943788743117899986068--9837882998999999999987 Q gi|254780388|r 373 LLTDGENTQDNE-EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS--PNSFFEANSTHELNKIFRDRIG 446 (458) Q Consensus 373 l~TDG~n~~~~~-~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs--~~~yy~a~~~~eL~~aF~~~i~ 446 (458) ++|||+++.... ........+|+.||+||+||++.. ....|+.+|+ +++||.+.+.++|.++|.++.. T Consensus 109 litdg~~~~~~~~~~~~~~~~~~~~~i~i~~ig~g~~------~~~~l~~ia~~~~g~~~~~~~~~~l~~~~~~i~~ 179 (182) T 1shu_X 109 ALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDF------EQAQLERIADSKEQVFPVKGGFQALKGIINSILA 179 (182) T ss_dssp EEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSC------CHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHH T ss_pred EECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCC------CHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH T ss_conf 9147877888638999999999977988999997855------9999999868999749934999999999999986 No 5 >>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human complement system, glycoprotein, SP, VWFA, hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* (A:1-224) Probab=99.43 E-value=6.5e-13 Score=100.43 Aligned_cols=171 Identities=14% Similarity=0.103 Sum_probs=115.2 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHH----HHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 6677766522112346775666520121100677665565576812100----566665641256777776458899999 Q gi|254780388|r 272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI----RTIVKTFAIDENEMGSTAINDAMQTAY 347 (458) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~g~T~~~~gl~~g~ 347 (458) +..+.++..++..+... ....+.+...|+.......++........ ..........+.+.|+|+...+|..+. T Consensus 28 ~~~k~a~~~~~~~~~~~---~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~ 104 (224) T 2odp_A 28 LIFKESASLMVDRIFSF---EINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVY 104 (224) T ss_dssp HHHHHHHHHHHHHHHTT---CCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99999999999853458---996199999987843699827988755799999999717556677889777999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHH--------HHHHHHHHCCCEEEEEEECCCCCCCCHHHHHH Q ss_conf 8623666654444566777506999996066888854089--------99999998796899999437887431178999 Q gi|254780388|r 348 DTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGI--------AICNKAKSQGIRIMTIAFSVNKTQQEKARYFL 419 (458) Q Consensus 348 ~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~--------~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~l 419 (458) +.|..................|++||+|||..+....... ..+..+|+.||.||+|+++.... ....| T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~iilitDg~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~i~ig~~~~----~~~~l 180 (224) T 2odp_A 105 LMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDV----DWREL 180 (224) T ss_dssp HHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCC----CHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC----CHHHH T ss_conf 99987654202345666788629999977854468852789999876589999986697799995058655----99999 Q ss_pred HHHCC--C--CCEEEECCHHHHHHHHHHHHHHHH Q ss_conf 86068--9--837882998999999999987587 Q gi|254780388|r 420 SNCAS--P--NSFFEANSTHELNKIFRDRIGNEI 449 (458) Q Consensus 420 k~CAs--~--~~yy~a~~~~eL~~aF~~~i~~~~ 449 (458) +.+|+ . .+||.+.+.++|.++|++++.+.. T Consensus 181 ~~ia~~~~g~~~~~~~~~~~~l~~~~~~i~~~i~ 214 (224) T 2odp_A 181 NELGSKKDGERHAFILQDTKALHQVFEHMLDVSK 214 (224) T ss_dssp HHHSCCCTTCCCEEEESSHHHHHHHHHHHEECTT T ss_pred HHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCC T ss_conf 9986388987249995898999999987502211 No 6 >>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for structural genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} (A:) Probab=99.42 E-value=1.3e-11 Score=92.09 Aligned_cols=164 Identities=12% Similarity=0.223 Sum_probs=120.9 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 43306677766522112346775666520121100677665565576812100566665641256777776458899999 Q gi|254780388|r 268 IKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAY 347 (458) Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~ 347 (458) ..+++..+..+..+.... ...+.+...|+.......+++...... ...+........+.|+|+...||.++. T Consensus 31 ~~rl~~~k~~v~~l~~~~-------~~~rv~iv~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~T~~~~aL~~a~ 102 (218) T 3ibs_A 31 PSRLEKAKRLISRLVDEL-------DNDKVGXIVFAGDAFTQLPITSDYISA-KXFLESISPSLISKQGTAIGEAINLAT 102 (218) T ss_dssp SCHHHHHHHHHHHHHHTC-------SSCEEEEEEESSSEEEEEEEESCHHHH-HHHHHTCCGGGCCSCSCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCCCHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHH T ss_conf 379999999999999648-------996589999898121120354256677-777876233666689945789999775 Q ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC--------------- Q ss_conf 86236666544445667775069999960668888540899999999879689999943788743--------------- Q gi|254780388|r 348 DTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ--------------- 412 (458) Q Consensus 348 ~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~--------------- 412 (458) +.|.. .+...|.+|++|||..+.. ......+.+|+.+|.||+++++...... T Consensus 103 ~~l~~-----------~~~~~~~~i~itDG~~~~~--~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (218) T 3ibs_A 103 RSFTP-----------QEGVGRAIIVITDGENHEG--GAVEAAKAAAEKGIQVSVLGVGXPEGAPIPVEGTNDYRRDREG 169 (218) T ss_dssp TTSCS-----------CSSCCEEEEEEECCTTCCS--CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTS T ss_pred HHHCH-----------HHCCCCCEEEECCCCCCCC--CCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 33011-----------0045653499438987777--5046667766406537653047765544320122220102467 Q ss_pred -----CHHHHHHHHHC--CCCCEEEECCHHHHHHHHHHHHHHHHHHH Q ss_conf -----11789998606--89837882998999999999987587535 Q gi|254780388|r 413 -----EKARYFLSNCA--SPNSFFEANSTHELNKIFRDRIGNEIFER 452 (458) Q Consensus 413 -----~~~~~~lk~CA--s~~~yy~a~~~~eL~~aF~~~i~~~~~~~ 452 (458) ......|+..| +.|.||++.+.++|.+.|.+.|.+....+ T Consensus 170 ~~~~~~~~~~~l~~la~~~~g~~~~~~~~~~l~~~~~~~i~~~~~~~ 216 (218) T 3ibs_A 170 NVIVTRLNEGXCQEIAKDGKGIYVRVDNSNSAQKAISQEISKXAKSD 216 (218) T ss_dssp CBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHHHC- T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCC T ss_conf 54545479999999998549089995187999999999997650434 No 7 >>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens} (A:) Probab=99.39 E-value=7.5e-12 Score=93.66 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=109.6 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 67776652211234677566652012110067766556557681210056666564125677777645889999986236 Q gi|254780388|r 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIIS 352 (458) Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~ 352 (458) ..+..+..++..... .....+.+...|+.......++.......... .........+.|+|+...++..+.+.+.. T Consensus 22 ~~k~~~~~~i~~~~~---~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~g~t~~~~al~~a~~~~~~ 97 (184) T 3gxb_A 22 RSKEFMEEVIQRMDV---GQDSIHVTVLQYSYMVTVEYPFSEAQSKGDIL-QRVREIRYQGGNRTNTGLALRYLSDHSFL 97 (184) T ss_dssp HHHHHHHHHHHTSCB---CTTSEEEEEEEESSSEEEEECTTSCCCHHHHH-HHHHTCCCCCCSCCCHHHHHHHHHHTGGG T ss_pred HHHHHHHHHHHHCCC---CCCCCEEEEEEEEEEEEEECCCCCCCCHHHHH-HHHHCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 999999999996565---88860899999831245651764336779999-98712100363033589999999998615 Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEC Q ss_conf 66654444566777506999996066888854089999999987968999994378874311789998606898378829 Q gi|254780388|r 353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEAN 432 (458) Q Consensus 353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~a~ 432 (458) .... ..+...|++|++|||..+... ..+.+|++||+||++.+.+ ...|+..|+.+++|.+. T Consensus 98 ~~~~------~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~i~~igig~~~~-----~~~l~~ia~~~~~~~~~ 158 (184) T 3gxb_A 98 VSQG------DREQAPNLVYMVTGNPASDEI--------KRLPGDIQVVPIGVGPNAN-----VQELERIGWPNAPILIQ 158 (184) T ss_dssp SCCG------GGGGSCEEEEEEECSCCSSCC--------CCCCTTEEEEEEEESTTSC-----HHHHHHHHTTSCCEEES T ss_pred CCCC------CCCCCCEEEEEECCCCCCHHH--------HHHHCCCEEEEEEECCCCC-----HHHHHHHCCCCCEEEEC T ss_conf 1348------988985699996699970578--------9874278599999456158-----99999873999679938 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 9899999999998758 Q gi|254780388|r 433 STHELNKIFRDRIGNE 448 (458) Q Consensus 433 ~~~eL~~aF~~~i~~~ 448 (458) +.++|.++|++++... T Consensus 159 ~~~~l~~~~~~i~~~l 174 (184) T 3gxb_A 159 DFETLPREAPDLVLQR 174 (184) T ss_dssp CTTTHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 9999999999999755 No 8 >>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} (A:) Probab=99.36 E-value=5.4e-11 Score=88.19 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=111.4 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---HH-HHHHCCCCCCCCCCHHHHHHHH Q ss_conf 6677766522112346775666520121100677665565576812100566---66-5641256777776458899999 Q gi|254780388|r 272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTI---VK-TFAIDENEMGSTAINDAMQTAY 347 (458) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~i~~~~~~g~T~~~~gl~~g~ 347 (458) +..+.++..++...... ....+.+.+.|+.......++........... +. .......+.++|+...+|.++. T Consensus 34 ~~~k~a~~~~~~~~~~~---~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~al~~a~ 110 (223) T 1q0p_A 34 TGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVY 110 (223) T ss_dssp HHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCC---CCCCEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 99999999999975447---988589999977945999982565301178888876421202357889867999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH------------HHCCCEEEEEEECCCCCCCCHH Q ss_conf 8623666654444566777506999996066888854089999999------------9879689999943788743117 Q gi|254780388|r 348 DTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKA------------KSQGIRIMTIAFSVNKTQQEKA 415 (458) Q Consensus 348 ~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~------------K~~gI~IytI~f~~~~~~~~~~ 415 (458) ..+........ ...+...|++|++|||..+........+.+.. +..|++||+||++...+ T Consensus 111 ~~~~~~~~~~~---~~~~~~~~~iil~tdG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ig~g~~~~----- 182 (223) T 1q0p_A 111 SMMSWPDDVPP---EGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN----- 182 (223) T ss_dssp HHHCCTTSSCC---TTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCC----- T ss_pred HHHHHHHCCCC---CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC----- T ss_conf 99874012466---6667775289997278766789807899999886667899999986698069874687579----- Q ss_pred HHHHHHHCC--CC--CEEEECCHHHHHHHHHHHHHHH Q ss_conf 899986068--98--3788299899999999998758 Q gi|254780388|r 416 RYFLSNCAS--PN--SFFEANSTHELNKIFRDRIGNE 448 (458) Q Consensus 416 ~~~lk~CAs--~~--~yy~a~~~~eL~~aF~~~i~~~ 448 (458) ...|+..|+ .| +||.+.+.++|.++|++++.+. T Consensus 183 ~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~i~~~i 219 (223) T 1q0p_A 183 QVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDES 219 (223) T ss_dssp HHHHHHHSCCCTTCCCEEETTC--------------- T ss_pred HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHH T ss_conf 9999999808899727999399999999999998750 No 9 >>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} (A:) Probab=99.33 E-value=3.4e-11 Score=89.46 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=112.3 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 66777665221123467756665201211006776655655768121005666656412567777764588999998623 Q gi|254780388|r 272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTII 351 (458) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls 351 (458) +..+.....++...... ....+.+...|+.......++........ .....+....+.|+|....++.+++..+. T Consensus 24 ~~~k~~~~~~i~~~~~~---~~~~~~~iv~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~a~~~~~ 98 (189) T 1atz_A 24 DEMKSFAKAFISKANIG---PRLTQVSVLQYGSITTIDVPWNVVPEKAH--LLSLVDVMQREGGPSQIGDALGFAVRYLT 98 (189) T ss_dssp HHHHHHHHHHHHHSCBS---TTSEEEEEEEESSSEEEEECTTCCCCHHH--HHHHHHTCCCCCCCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCC---CCCCEEEEEEECCCEEEEEECCCCHHHHH--HHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 99999999999973548---87758999961231469972685217899--99999887763200001366667888864 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHC--CCCCEE Q ss_conf 666654444566777506999996066888854089999999987968999994378874311789998606--898378 Q gi|254780388|r 352 SSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA--SPNSFF 429 (458) Q Consensus 352 ~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CA--s~~~yy 429 (458) ..... ......+++|++|||.++.. ...+++.+|++||+||+||++.+.+ ...|+..| +.|.|| T Consensus 99 ~~~~~------~~~~~~~~ii~iTDG~~~~~---~~~~~~~~~~~~v~i~~igig~~~~-----~~~l~~ia~~~~g~~~ 164 (189) T 1atz_A 99 SEMHG------ARPGASKAVVILVTDVSVDS---VDAAADAARSNRVTVFPIGIGDRYD-----AAQLRILAGPAGDSNV 164 (189) T ss_dssp SCCTT------CCTTSEEEEEEEECSCCSSC---CHHHHHHHHHTTEEEEEEEESSSSC-----HHHHHHHTGGGGGGGC T ss_pred HHHCC------CCCCCCEEEEEECCCCCCCH---HHHHHHHHHHCCCEEEEEEECCCCC-----HHHHHHHHCCCCCCCE T ss_conf 56407------98898538999727987523---7799999985683699998578489-----9999998568886747 Q ss_pred EECCHHHHHHHHHHHHHHHHH Q ss_conf 829989999999999875875 Q gi|254780388|r 430 EANSTHELNKIFRDRIGNEIF 450 (458) Q Consensus 430 ~a~~~~eL~~aF~~~i~~~~~ 450 (458) +..+..++.+.|.+++++.+. T Consensus 165 ~~~~~~~~~~~l~~~~~~~~~ 185 (189) T 1atz_A 165 VKLQRIEDLPTMVTLGNSFLH 185 (189) T ss_dssp EEESSTTHHHHHHHSCSHHHH T ss_pred EEECCHHHHHHHHHHHHHHHH T ss_conf 983688678889999999998 No 10 >>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (A:1-252) Probab=99.32 E-value=4.8e-11 Score=88.48 Aligned_cols=168 Identities=11% Similarity=0.068 Sum_probs=101.1 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHH---------HHH---------HHHHHHHHH Q ss_conf 43306677766522112346775666520121100677665565576812---------100---------566665641 Q gi|254780388|r 268 IKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVH---------KLI---------RTIVKTFAI 329 (458) Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---------~~~~~~~i~ 329 (458) .++++..+.++..++.......+ ..+.+...|+.......++..... ..+ .......-. T Consensus 57 ~s~~~~~k~~~~~~i~~l~~~~~---~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (252) T 1jey_A 57 LTPFDMSIQCIQSVYISKIISSD---RDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQD 133 (252) T ss_dssp CCHHHHHHHHHHHHHHHHHHTTC---CCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHHHHHHTTSHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCC---CCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHC T ss_conf 78499999999999996166799---981899997368988888987079950488879999999997640233102210 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC-----HHHHHHHHHHHCCCEEEEEE Q ss_conf 2567777764588999998623666654444566777506999996066888854-----08999999998796899999 Q gi|254780388|r 330 DENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNE-----EGIAICNKAKSQGIRIMTIA 404 (458) Q Consensus 330 ~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~-----~~~~~C~~~K~~gI~IytI~ 404 (458) ...+.|+|+...||..+..+|.... .....|+|||+|||+++.... ....+++.+|+.||++|+|+ T Consensus 134 ~~~~~g~t~~~~al~~a~~~l~~~~---------~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~ 204 (252) T 1jey_A 134 MMGHGSDYSLSEVLWVCANLFSDVQ---------FKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMH 204 (252) T ss_dssp HHCCSCCCCHHHHHHHHHHHHHTCS---------SCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHC---------CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 3676654439999999999998613---------0236747999889998788753779999999999997090478834 Q ss_pred ECCCCCCCC--HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHH Q ss_conf 437887431--1789998606898378829989999999999875 Q gi|254780388|r 405 FSVNKTQQE--KARYFLSNCASPNSFFEANSTHELNKIFRDRIGN 447 (458) Q Consensus 405 f~~~~~~~~--~~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i~~ 447 (458) ++.+.+... ....+++.++.....+.....+.|.+.|++|..+ T Consensus 205 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~ 249 (252) T 1jey_A 205 LKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAK 249 (252) T ss_dssp BCCTTCCCTTTTGGGTCC--------CCCCCBCSHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 688898761031687741113322234665156699999876422 No 11 >>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} (A:) Probab=99.28 E-value=2.9e-10 Score=83.47 Aligned_cols=165 Identities=15% Similarity=0.170 Sum_probs=112.7 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 66777665221123467756665201211006776655655768121005666656412567777764588999998623 Q gi|254780388|r 272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTII 351 (458) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls 351 (458) +..+..+..++..+.. ...+.+...|+.......++..... ........+......++|....++..+..... T Consensus 28 ~~~k~~~~~~~~~l~~-----~~~~~~iv~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (198) T 1n3y_A 28 ATMMNFVRAVISQFQR-----PSTQFSLMQFSNKFQTHFTFEEFRR--SSNPLSLLASVHQLQGFTYTATAIQNVVHRLF 100 (198) T ss_dssp HHHHHHHHHHHTTSCT-----TTEEEEEEEESSSEEEEECHHHHHH--CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTT T ss_pred HHHHHHHHHHHHHCCC-----CCCEEEEEEEECCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 9999999999996398-----8858999998435220367765110--78999999876623599708899999999861 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC--CCC-E Q ss_conf 6666544445667775069999960668888540899999999879689999943788743117899986068--983-7 Q gi|254780388|r 352 SSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS--PNS-F 428 (458) Q Consensus 352 ~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs--~~~-y 428 (458) .... .......|++|++|||+.+........+-+.+|++||.||+|+++..... +.....|+..|+ .+. + T Consensus 101 ~~~~------~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~i~i~~i~i~~~~~~-~~~~~~l~~ia~~~~g~~~ 173 (198) T 1n3y_A 101 HASY------GARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQN-RNSWKELNDIASKPSQEHI 173 (198) T ss_dssp SGGG------TCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGS-STTHHHHHHHSCSSSGGGE T ss_pred CHHC------CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCHHHHHHHHCCCCCCEE T ss_conf 4310------79877630599994589888622199999999978988999997776567-4459999998569986508 Q ss_pred EEECCHHHHHHHHHHHHHHHHH Q ss_conf 8829989999999999875875 Q gi|254780388|r 429 FEANSTHELNKIFRDRIGNEIF 450 (458) Q Consensus 429 y~a~~~~eL~~aF~~~i~~~~~ 450 (458) |.+.+.++|.+.|++++.+..+ T Consensus 174 ~~~~~~~~l~~~~~~i~~~l~~ 195 (198) T 1n3y_A 174 FKVEDFDALKDIQNQLKEKIFA 195 (198) T ss_dssp EEESSGGGGGGGHHHHHHHHHT T ss_pred EEECCHHHHHHHHHHHHHHHHC T ss_conf 9828999999999999987505 No 12 >>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} (B:1-236,B:463-505) Probab=99.25 E-value=2.5e-10 Score=83.89 Aligned_cols=169 Identities=11% Similarity=-0.011 Sum_probs=107.7 Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC----------CCHHHHHHHHHHHHHHCCCC-CCC Q ss_conf 4330667776652211234677566652012110067766556557----------68121005666656412567-777 Q gi|254780388|r 268 IKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFS----------WGVHKLIRTIVKTFAIDENE-MGS 336 (458) Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~~~-~g~ 336 (458) .++++..+.++..++.......+ ..+.+.+.|+.......... ..........+...++.+.+ .|+ T Consensus 28 ~tr~~~ak~a~~~li~~~~~~~~---~d~vgiv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (279) T 1jey_B 28 ESPFEQAKKVITMFVQRQVFAEN---KDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQ 104 (279) T ss_dssp CCHHHHHHHHHHHHHHHHHHTTC---CCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSC T ss_pred CCHHHHHHHHHHHHHHHHHCCCC---CCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCC T ss_conf 99799999999999998723899---987999998347888755555675654985558998999999998644688778 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-H Q ss_conf 764588999998623666654444566777506999996066888854089999999987968999994378874311-7 Q gi|254780388|r 337 TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEK-A 415 (458) Q Consensus 337 T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~-~ 415 (458) |+...||..+...|..... ..+...++||++|||.++........+++.+|+.||+||+|+++........ . T Consensus 105 T~~~~aL~~A~~~l~~~~~-------~~~~~~~~IiliTDG~~~~~~~~~~~~~~~l~~~~i~i~~Igig~~~~~~~~~~ 177 (279) T 1jey_B 105 ADFLDALIVSMDVIQHETI-------GKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGD 177 (279) T ss_dssp CCHHHHHHHHHHHHHHHSS-------SSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCCC------- T ss_pred CCHHHHHHHHHHHHHHHHH-------CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC T ss_conf 7879999999999998750-------465454389998079988687899999999986596599961466653546642 Q ss_pred HHHHHHHCC--CCCEEEECCHHHHHHHHHHHHHH Q ss_conf 899986068--98378829989999999999875 Q gi|254780388|r 416 RYFLSNCAS--PNSFFEANSTHELNKIFRDRIGN 447 (458) Q Consensus 416 ~~~lk~CAs--~~~yy~a~~~~eL~~aF~~~i~~ 447 (458) ...++.++. .+.+|.+....++...++ .+.+ T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 210 (279) T 1jey_B 178 RGDGPFRLGGHGPSFPLKGITEQQKEGLE-IVKM 210 (279) T ss_dssp ---CCCCTTCSSCCCCTTTSCHHHHHHHH-HHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCH-HHHH T ss_conf 33302331124554312343211233200-1121 No 13 >>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} (A:) Probab=99.25 E-value=1.6e-09 Score=78.82 Aligned_cols=159 Identities=10% Similarity=0.100 Sum_probs=110.5 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 67776652211234677566652012110067766556557681210056666564125677777645889999986236 Q gi|254780388|r 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIIS 352 (458) Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~ 352 (458) ..+..+..++..... .....+.+.+.|+.......++.......... ...........++|+...++..+...+.. T Consensus 33 ~~k~~~~~l~~~~~~---~~~~~~v~iv~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~t~~~~al~~a~~~~~~ 108 (202) T 1ijb_A 33 VLKAFVVDMMERLRV---SQKWVRVAVVEYHDGSHAYIGLKDRKRPSELR-RIASQVKYAGSQVASTSEVLKYTLFQIFS 108 (202) T ss_dssp HHHHHHHHHHHTBCB---STTSEEEEEEEESSSEEEEECTTCCCCHHHHH-HHHHTCCCCCBSCCCHHHHHHHHHHHTSS T ss_pred HHHHHHHHHHHHHHC---CCCCCEEEEEEECCCCCCCCCCCCCCCHHHHH-HHHHHHCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 999999999999851---79997899999789630210345334578999-99974302233234440678999999864 Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC-HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHC--CCCC-E Q ss_conf 66654444566777506999996066888854-089999999987968999994378874311789998606--8983-7 Q gi|254780388|r 353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNE-EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA--SPNS-F 428 (458) Q Consensus 353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~-~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CA--s~~~-y 428 (458) .. ......|++|++|||+.+.... ........++..|+.||+||++...+ ...|+..| +.+. + T Consensus 109 ~~--------~~~~~~~~~i~itdg~~~~~~~~~~~~~~~~~~~~~~~i~~igig~~~~-----~~~l~~ia~~~~g~~~ 175 (202) T 1ijb_A 109 KI--------DRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHAN-----LKQIRLIEKQAPENKA 175 (202) T ss_dssp SC--------SCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSC-----HHHHHHHHHHCTTCCC T ss_pred HC--------CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC-----HHHHHHHHHCCCCCCE T ss_conf 01--------3455675389998158888775016789987531795899999587349-----9999999856899867 Q ss_pred EEECCHHHHHHHHHHHHHHH Q ss_conf 88299899999999998758 Q gi|254780388|r 429 FEANSTHELNKIFRDRIGNE 448 (458) Q Consensus 429 y~a~~~~eL~~aF~~~i~~~ 448 (458) |.+.+.++|.+.|++++... T Consensus 176 ~~~~~~~~l~~~~~~i~~~l 195 (202) T 1ijb_A 176 FVLSSVDELEQQRDEIVSYL 195 (202) T ss_dssp EEESSGGGHHHHHHHHHHHH T ss_pred EEECCHHHHHHHHHHHHHHH T ss_conf 98589999999999999997 No 14 >>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* (A:125-315) Probab=99.22 E-value=5.2e-11 Score=88.28 Aligned_cols=162 Identities=15% Similarity=0.180 Sum_probs=111.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 66777665221123467756665201211006776655655768121005666656412567777764588999998623 Q gi|254780388|r 272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTII 351 (458) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls 351 (458) +..+.++..++..... ...+.+...|+.......++......... .........+.+.|+...++..+...+. T Consensus 25 ~~~k~~~~~~~~~l~~-----~~~~v~ii~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 97 (191) T 3k6s_A 25 ATMMNFVRAVISQFQR-----PSTQFSLMQFSNKFQTHFTFEEFRRSSNP--LSLLASVHQLQGFTYTATAIQNVVHRLF 97 (191) T ss_dssp HHHHHHHHHHHHSSCS-----SSEEEEEEEESSSEEEEECSHHHHSCSCG--GGGTTTCCCCCSCBCHHHHHHHHHTTTT T ss_pred HHHHHHHHHHHHCCCC-----CCEEEEEEECCCCCEEEEECHHCCCCCCH--HHHHHEEEECCCCEEEEECHHHHHHHHC T ss_conf 8888999988750378-----86189999536661179861131033303--4343205622575012211334566423 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHC--CCCC-E Q ss_conf 666654444566777506999996066888854089999999987968999994378874311789998606--8983-7 Q gi|254780388|r 352 SSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA--SPNS-F 428 (458) Q Consensus 352 ~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CA--s~~~-y 428 (458) ... ........|++|++|||+.+.........-+.+|..+++||+|+|+..... ......|+..| +.|. + T Consensus 98 ~~~------~~~~~~~~~~ivlitDG~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~~~~~l~~ia~~~~g~~~ 170 (191) T 3k6s_A 98 HAS------YGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQN-RNSWKELNDIASKPSQEHI 170 (191) T ss_dssp STT------TTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGGS-TTSSHHHHTTSCSSTTTSC T ss_pred CCC------CCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCC-CCCHHHHHHCCCCCCCCCE T ss_conf 634------478889846999995686345753101111013304845899983354456-4312110000247985424 Q ss_pred EEECCHHHHHHHHHHHHHH Q ss_conf 8829989999999999875 Q gi|254780388|r 429 FEANSTHELNKIFRDRIGN 447 (458) Q Consensus 429 y~a~~~~eL~~aF~~~i~~ 447 (458) |.+.+.++|.++|++++.. T Consensus 171 ~~~~~~~~l~~~~~~i~~~ 189 (191) T 3k6s_A 171 FKVEDFDALKDIQNQLKEK 189 (191) T ss_dssp CCBSCSGGGGSSTTTHHHH T ss_pred EEEECCCCHHHHHCCCCCC T ss_conf 8861332001010022355 No 15 >>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} (A:) Probab=99.19 E-value=1.1e-09 Score=79.84 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=104.3 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE Q ss_conf 66652012110067766556557681210056666564125677777645889999986236666544445667775069 Q gi|254780388|r 291 VNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY 370 (458) Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ 370 (458) .....+.+...|+.......++............. ........|+|.....+......+..... .......|+ T Consensus 55 ~~~~~~v~ii~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 127 (223) T 2b2x_A 55 GPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAA-NKIVQRGGRQTMTALGIDTARKEAFTEAR------GARRGVKKV 127 (223) T ss_dssp STTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHH-TTCCCCCCSSCCHHHHHHHHHHTTSSGGG------TCCTTSEEE T ss_pred CCCCEEEEEEEEECCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCCEE T ss_conf 88860799999740057852754556799999999-75454433201015778777776224323------788787337 Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC----CCHHHHHHHHHCC--CCC-EEEECCHHHHHHHHHH Q ss_conf 99996066888854089999999987968999994378874----3117899986068--983-7882998999999999 Q gi|254780388|r 371 IVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQ----QEKARYFLSNCAS--PNS-FFEANSTHELNKIFRD 443 (458) Q Consensus 371 iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~----~~~~~~~lk~CAs--~~~-yy~a~~~~eL~~aF~~ 443 (458) ++++|||..+.. ......++.+|+++|+||+|+++.+.+. .......|+.+|+ .+. +|.+.+.++|.++|++ T Consensus 128 ivliTDG~~~~~-~~~~~~~~~~~~~~i~i~~igig~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~L~~~~~~ 206 (223) T 2b2x_A 128 MVIVTDGESHDN-YRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKA 206 (223) T ss_dssp EEEEESSCCTTG-GGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHH T ss_pred EEEEECCCCCCC-HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH T ss_conf 999846887762-3389999999753987999997066554433432479999998569986618983899999999999 Q ss_pred HHHHHH Q ss_conf 987587 Q gi|254780388|r 444 RIGNEI 449 (458) Q Consensus 444 ~i~~~~ 449 (458) ++.... T Consensus 207 i~~~~~ 212 (223) T 2b2x_A 207 LGERIF 212 (223) T ss_dssp HHTTTC T ss_pred HHHHHC T ss_conf 999862 No 16 >>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} (A:) Probab=99.18 E-value=8.4e-10 Score=80.57 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=114.0 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 66777665221123467756665201211006776655655768121005666656412567777764588999998623 Q gi|254780388|r 272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTII 351 (458) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls 351 (458) +..+.....++..... ...+.+...|+.......+++..... ............+.|+|+...++..+.+.+. T Consensus 24 ~~~k~~~~~~~~~l~~-----~~~~v~~v~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~t~~~~~l~~~~~~~~ 96 (194) T 1mf7_A 24 RRMKEFVSTVMEQLKK-----SKTLFSLMQYSEEFRIHFTFKEFQNN--PNPRSLVKPITQLLGRTHTATGIRKVVRELF 96 (194) T ss_dssp HHHHHHHHHHHHHHCC-----TTEEEEEEEESSSEEEEECHHHHHHS--CCHHHHHTTCCCCCSCBCHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEEEECCCCCCH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 9999999999997076-----88369999996210576304554548--9999998501013599642079999999886 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC--CCC-E Q ss_conf 6666544445667775069999960668888540899999999879689999943788743117899986068--983-7 Q gi|254780388|r 352 SSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS--PNS-F 428 (458) Q Consensus 352 ~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs--~~~-y 428 (458) .... ...+...+++||+|||+.+.........-+.+++++++++.+.|..+... +.....|+..|. +|. + T Consensus 97 ~~~~------~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~L~~ia~~~~g~~~ 169 (194) T 1mf7_A 97 NITN------GARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRS-EKSRQELNTIASKPPRDHV 169 (194) T ss_dssp SGGG------TCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCS-HHHHHHHHHHSCSSHHHHE T ss_pred HHHC------CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCHHHHHHHHCCCCCCCE T ss_conf 4542------67678503899983699889803299999999978999999997887666-3579999998669986618 Q ss_pred EEECCHHHHHHHHHHHHHHHH Q ss_conf 882998999999999987587 Q gi|254780388|r 429 FEANSTHELNKIFRDRIGNEI 449 (458) Q Consensus 429 y~a~~~~eL~~aF~~~i~~~~ 449 (458) |.+.+.++|.++|++++.... T Consensus 170 ~~~~~~~~l~~~~~~i~~~i~ 190 (194) T 1mf7_A 170 FQVNNFEALKTIQNQLREKIF 190 (194) T ss_dssp EEESSGGGGGGGHHHHHHHHH T ss_pred EEECCHHHHHHHHHHHHHHHC T ss_conf 993899999999999987640 No 17 >>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} (C:) Probab=99.17 E-value=2.3e-09 Score=77.77 Aligned_cols=152 Identities=15% Similarity=0.041 Sum_probs=94.7 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE Q ss_conf 66652012110067766556557681210056666564125677777645889999986236666544445667775069 Q gi|254780388|r 291 VNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY 370 (458) Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ 370 (458) .....+.+...|+.......++.......+.......+.... .++.........+...+.... ........|+ T Consensus 39 ~~~~~~v~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 111 (200) T 1v7p_C 39 GPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYG-GDLTNTFGAIQYARKYAYSAA------SGGRRSATKV 111 (200) T ss_dssp STTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCC-CSCCCHHHHHHHHHHHTTSGG------GTCCTTSEEE T ss_pred CCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHCCCCC------CCCCCCCCEE T ss_conf 888518999998514557517650257899999875332102-576445899998887524633------4898775148 Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC----CCHHHHHHHHHCC--CCC-EEEECCHHHHHHHHHH Q ss_conf 99996066888854089999999987968999994378874----3117899986068--983-7882998999999999 Q gi|254780388|r 371 IVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQ----QEKARYFLSNCAS--PNS-FFEANSTHELNKIFRD 443 (458) Q Consensus 371 iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~----~~~~~~~lk~CAs--~~~-yy~a~~~~eL~~aF~~ 443 (458) +||+|||..+... ......+.+++.||.||+||++...+. .......|+..|. .+. +|.+.+.++|.+.|++ T Consensus 112 iil~TDG~~~~~~-~~~~~~~~~~~~~v~i~~igvg~~~~~~~~~~~~~~~~l~~ia~~~~g~~~~~~~~~~~l~~~~~~ 190 (200) T 1v7p_C 112 MVVVTDGESHDGS-MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGT 190 (200) T ss_dssp EEEEESSCCSCGG-GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHH T ss_pred EEEEECCCCCCCC-HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH T ss_conf 9997068878740-126999999868968999996564444654420059999999659861139981999999999999 Q ss_pred HHHHHHH Q ss_conf 9875875 Q gi|254780388|r 444 RIGNEIF 450 (458) Q Consensus 444 ~i~~~~~ 450 (458) +..+..+ T Consensus 191 i~~~i~~ 197 (200) T 1v7p_C 191 LGEQIFS 197 (200) T ss_dssp HHHHHHT T ss_pred HHHHHHC T ss_conf 9977335 No 18 >>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} (A:) Probab=99.11 E-value=2.8e-09 Score=77.19 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=102.6 Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE Q ss_conf 66652012110067766556557681210056666564125677777645889999986236666544445667775069 Q gi|254780388|r 291 VNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY 370 (458) Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ 370 (458) .....+.+...|+.......++..... .......+..+...+++....|.........-.... ........|+ T Consensus 40 ~~~~~~v~iv~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 112 (213) T 1pt6_A 40 GPKQTQVGIVQYGENVTHEFNLNKYSS---TEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEA----RGARRGVKKV 112 (213) T ss_dssp STTSBEEEEEEESSSEEEEECTTTCSS---HHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGG----GTCCTTCEEE T ss_pred CCCCCEEEEEEEEEEEEEEEECCCCCC---HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC----CCCCCCCCEE T ss_conf 888738999999644789982666676---899999998787616854502677778888751422----3777899547 Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC----CHHHHHHHHHCC---CCCEEEECCHHHHHHHHHH Q ss_conf 999960668888540899999999879689999943788743----117899986068---9837882998999999999 Q gi|254780388|r 371 IVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ----EKARYFLSNCAS---PNSFFEANSTHELNKIFRD 443 (458) Q Consensus 371 iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~----~~~~~~lk~CAs---~~~yy~a~~~~eL~~aF~~ 443 (458) +|++|||..+.. .........+|+.|++||+|+++.+.+.. ......|+..|+ .++||.+.+.++|.++|++ T Consensus 113 iiliTDG~~~~~-~~~~~~~~~~~~~~v~i~~igig~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~l~~~~~~ 191 (213) T 1pt6_A 113 MVIVTDGESHDN-HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKT 191 (213) T ss_dssp EEEEESSCCSCS-HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHH T ss_pred EEEEECCCCCCC-HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHH T ss_conf 999956888884-2089999999988998999997166554443431359999998669985508992899999999999 Q ss_pred HHHHHHH Q ss_conf 9875875 Q gi|254780388|r 444 RIGNEIF 450 (458) Q Consensus 444 ~i~~~~~ 450 (458) +..+... T Consensus 192 i~~~~~~ 198 (213) T 1pt6_A 192 LGERIFA 198 (213) T ss_dssp HHHHHTC T ss_pred HHHHHHC T ss_conf 9999835 No 19 >>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia coli} (A:) Probab=98.94 E-value=3.9e-10 Score=82.66 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=102.4 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH Q ss_conf 06677766522112346775666520121100677665565576812100566665641256777776458899999862 Q gi|254780388|r 271 KHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTI 350 (458) Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~L 350 (458) ++..+..+..++...... ..+.....|+.......++..... .............+.|+|+...++......+ T Consensus 20 ~~~~k~~~~~~i~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 92 (179) T 1mjn_A 20 FQKILDFMKDVMKKCSNT-----SYQFAAVQFSTSYKTEFDFSDYVK--RKDPDALLKHVKHMLLLTNTFGAINYVATEV 92 (179) T ss_dssp HHHHHHHHHHHHHHTTTS-----SEEEEEEEESSSEEEEECHHHHHH--HCCHHHHHTTCCCCCBCCCHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEEEECCCCHHH--HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 999999999999973635-----563289999741157511111026--7899999873233579851558899999987 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC--CC-C Q ss_conf 36666544445667775069999960668888540899999999879689999943788743117899986068--98-3 Q gi|254780388|r 351 ISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS--PN-S 427 (458) Q Consensus 351 s~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs--~~-~ 427 (458) ..... .......|+++++|||..+.... ..-+.+|+++|+||+|+++.. .....|+..|. .+ + T Consensus 93 ~~~~~------~~~~~~~~~ii~~TDG~~~~~~~---~~~~~~~~~~v~v~~igiG~~-----~~~~~L~~ia~~~~g~~ 158 (179) T 1mjn_A 93 FREEL------GARPDATKVLIIITDGEATDSGN---IDAAKDIIRYIIGIGKHFQTK-----ESQETLHKFASKPASEF 158 (179) T ss_dssp SSGGG------TCCTTSEEEEEEEESSCCSSCSC---CGGGTTSEEEEEEESGGGCSH-----HHHHTTGGGSCSCHHHH T ss_pred HHHHC------CCCCCCCEEEEEECCCCCCCCHH---HHHHHCCCCCEEEEEEECCCC-----CCHHHHHHHHCCCCCCE T ss_conf 52201------89999824899980799886367---999838735359998505740-----27999999857998652 Q ss_pred EEEECCHHHHHHHHHHHHHH Q ss_conf 78829989999999999875 Q gi|254780388|r 428 FFEANSTHELNKIFRDRIGN 447 (458) Q Consensus 428 yy~a~~~~eL~~aF~~~i~~ 447 (458) +|.+++.++|.++|++++.+ T Consensus 159 ~~~~~~~~~l~~~~~~i~~~ 178 (179) T 1mjn_A 159 VKILDTFEKLKDLCTELQKK 178 (179) T ss_dssp EEEESSGGGSCCHHHHHHHH T ss_pred EEECCCHHHHHHHHHHHHHH T ss_conf 99869989999999999703 No 20 >>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} (A:365-538) Probab=98.86 E-value=1.7e-07 Score=65.91 Aligned_cols=125 Identities=13% Similarity=0.076 Sum_probs=84.4 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 52012110067766556557681210056666564125677777645889999986236666544445667775069999 Q gi|254780388|r 294 TVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVL 373 (458) Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil 373 (458) ..+.+...|+.......+++..... .........+.|+|++..+|.++.+.+.. .+.+|+ T Consensus 43 ~~~v~li~F~~~~~~~~~~~~~~~~-----~~~~~l~~~~~g~T~~~~al~~a~~~~~~---------------~~~ii~ 102 (174) T 1yvr_A 43 EKDSHMVAFSDEMLPCPITVNMLLH-----EVVEKMSDITMGSTDCALPMLWAQKTNTA---------------ADIFIV 102 (174) T ss_dssp CSSEEEEEESSSEECCSCCTTSCHH-----HHHHHHTTCCCSCCCTTHHHHHHHHTTCC---------------CSEEEE T ss_pred CCCCEEEEECCCEEECCCCCCCHHH-----HHHHHHHCCCCCCCHHHHHHHHHHHCCCC---------------CCEEEE T ss_conf 5997799976965878998654099-----99999853678983599999999962656---------------888999 Q ss_pred EECCCCCCCCCH---HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH Q ss_conf 960668888540---899999999879689999943788743117899986068983788299899999999998 Q gi|254780388|r 374 LTDGENTQDNEE---GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445 (458) Q Consensus 374 ~TDG~n~~~~~~---~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i 445 (458) +|||+.+..... .....+.++..+|.+|+|+++...... ......+....+....+..+.+.++. T Consensus 103 iTDG~~~~~~~~~~~~~~~~~~~~~~~v~~~~vg~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~ 170 (174) T 1yvr_A 103 FTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGFSI-------ADPDDRGMLDICGFDSGALDVIRNFT 170 (174) T ss_dssp EECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSEES-------SCTTCTTEEEEETTCTTHHHHHHHHH T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-------CCCCCCCEEEEECCCHHHHHHHHHHH T ss_conf 717986789889999999999984899749999766888787-------78899995898468777999999998 No 21 >>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing, platelet integrin ALPHAIIBBETA3, polymorphism, glycoprotein, cell adhesion, calcium; HET: NAG MAN; 2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* (B:110-351) Probab=98.79 E-value=4.5e-07 Score=63.14 Aligned_cols=120 Identities=9% Similarity=-0.024 Sum_probs=76.2 Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCEEEEEEECCCCCCC--------------- Q ss_conf 00566665641256777776458899999862366-66544445667775069999960668888--------------- Q gi|254780388|r 319 LIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISS-NEDEVHRMKNNLEAKKYIVLLTDGENTQD--------------- 382 (458) Q Consensus 319 ~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~-~~~~~~~~~~~~~~~K~iil~TDG~n~~~--------------- 382 (458) .....++..+..+.+.|||+.++++.+|...+... +...| ..+..|+|||+|||..+.. T Consensus 89 ~~~~~~~~~i~~~~~~gGtd~~e~~~~a~~~~~~~~~~~~~-----r~~~~k~iilitD~~~~~~~~~~~~~~~~~~~~~ 163 (242) T 2vdr_B 89 DQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGW-----RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQ 163 (242) T ss_dssp SCHHHHHHHHHTCCCCCCSBSSBCHHHHHHHHHHCHHHHTC-----CTTSEEEEEEEESSCBCCTTGGGGGTCCSCCCCC T ss_pred CCHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHCCCCC-----CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 88999999986221537898773399999999861101677-----8796699999886874435676533331478875 Q ss_pred ----------------CCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCE-EEECCHHHHHHHHHHHH Q ss_conf ----------------5408999999998796899999437887431178999860689837-88299899999999998 Q gi|254780388|r 383 ----------------NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSF-FEANSTHELNKIFRDRI 445 (458) Q Consensus 383 ----------------~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~y-y~a~~~~eL~~aF~~~i 445 (458) .......-++++..++.++.+-..... + .-.-|..+.++... ......+++.+..++.+ T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~~~~~~~~~~~~~~~ni~~~i~~~~ 239 (242) T 2vdr_B 164 CHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVV---N-LYQNYSELIPGTTVGVLSMDSSNVLQLIVDAY 239 (242) T ss_dssp CCCCTTSBCTTTTTSCCCCHHHHHHHHHHTTCEEEEEEEGGGH---H-HHHHHHTTSTTCEEEEESSCCHHHHHHHHHHH T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECHHHH---H-HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 0326788645445477889999999998629379999457888---8-99999875676544331455477999999999 Q ss_pred HH Q ss_conf 75 Q gi|254780388|r 446 GN 447 (458) Q Consensus 446 ~~ 447 (458) .+ T Consensus 240 ~k 241 (242) T 2vdr_B 240 GK 241 (242) T ss_dssp HT T ss_pred HH T ss_conf 87 No 22 >>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- sheet, RNA binding protein; 1.89A {Deinococcus radiodurans} (A:53-64,A:359-535) Probab=98.79 E-value=1.5e-07 Score=66.11 Aligned_cols=125 Identities=6% Similarity=-0.003 Sum_probs=87.9 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 20121100677665565576812100566665641256777776458899999862366665444456677750699999 Q gi|254780388|r 295 VRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLL 374 (458) Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~ 374 (458) .+.+...|+.......+.+.... .....+....+.|+|+...+|..+.+.+.. .|.++++ T Consensus 58 ~~v~li~F~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~T~~~~al~~a~~~~~~---------------~~~vili 117 (189) T 2nvo_A 58 PDALTMGFAEQFRPLGITPRDTL-----ESAMQKAQSVSFGGTDCAQPILWAAQERLD---------------VDTFVVY 117 (189) T ss_dssp SEEEEEEEBSSEEECCCCTTCCH-----HHHHHHTCCSSBCCCCTTHHHHHHHHTTCC---------------CSEEEEE T ss_pred CCCEEEEECCCCEECCCCCCCHH-----HHHHHHHHCCCCCCCHHHHHHHHHHHCCCC---------------CCEEEEE T ss_conf 98179987895177588887329-----999999854578985699999999846455---------------8989998 Q ss_pred ECCCCCCCCCH---HHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 60668888540---8999999998796899999437887431178999860689837882998999999999987 Q gi|254780388|r 375 TDGENTQDNEE---GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIG 446 (458) Q Consensus 375 TDG~n~~~~~~---~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i~ 446 (458) |||+.+..... .....+.+|..+|.|++|+++...... ..-...+.++.+....++.+.+.++.+ T Consensus 118 tDg~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~ 185 (189) T 2nvo_A 118 TDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATEFSI-------ADPQRRDMLDVVGFDAAAPNVMTAFAR 185 (189) T ss_dssp ESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSCCCC-------SCTTCSSEEEEEECCTTHHHHHHHHHT T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-------CCCCCCCEEEEECCCHHHHHHHHHHHC T ss_conf 07997789999999999999852899759999803888887-------888999947872688899999999866 No 23 >>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} (A:) Probab=98.52 E-value=7.3e-09 Score=74.56 Aligned_cols=158 Identities=9% Similarity=0.029 Sum_probs=87.8 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 67776652211234677566652012110067766556557681210056666564125677777645889999986236 Q gi|254780388|r 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIIS 352 (458) Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~ 352 (458) ..+..+..++...... ....+.+...|........++. ..+...+...+..+.+.|+|+...++..+...+.. T Consensus 22 ~~k~~~~~~i~~l~~~---~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~~ggt~~~~~~~~a~~~~~~ 94 (212) T 2iue_A 22 NVQTLGSDLLKALNEI---SRSGRIGFGSIVNMTFQHILKL----TADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAI 94 (212) T ss_dssp HHHHHHHHHHHHHHHH---CSCEEEEEEEESSSCEEEEEEE----ESCHHHHHHHHHTCCCCCCSSSSBCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHC---CCCCCCCEEEECCCCCCCCCCC----CCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 9999999999998743---7443201344046543236776----66799999987422125789888319999999998 Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHC-CCCCEEEE Q ss_conf 66654444566777506999996066888854089999999987968999994378874311789998606-89837882 Q gi|254780388|r 353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA-SPNSFFEA 431 (458) Q Consensus 353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CA-s~~~yy~a 431 (458) .... .......|++|++|||..+.............+..++.++.++++.+..........+...+ ..+.++.. T Consensus 95 ~~~~-----~~~~~~~~~iilltdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (212) T 2iue_A 95 CLGE-----IGWRNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIF 169 (212) T ss_dssp CHHH-----HTCCSSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEE T ss_pred HHHH-----CCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 5675-----28987746999987886344551134333034687168754644566665677589999999870982899 Q ss_pred CCHHHHHHHHH Q ss_conf 99899999999 Q gi|254780388|r 432 NSTHELNKIFR 442 (458) Q Consensus 432 ~~~~eL~~aF~ 442 (458) .......+.|+ T Consensus 170 ~~~~~~~~~~~ 180 (212) T 2iue_A 170 VVPSRMVKTYE 180 (212) T ss_dssp EEEHHHHHHHH T ss_pred EECHHHHHHHH T ss_conf 95656689999 No 24 >>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, alternative splicing, cell adhesion, disease mutation, glycoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* (B:109-352) Probab=98.40 E-value=1.2e-05 Score=54.13 Aligned_cols=117 Identities=9% Similarity=-0.003 Sum_probs=69.8 Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--------------- Q ss_conf 005666656412567777764588999998623-6666544445667775069999960668888--------------- Q gi|254780388|r 319 LIRTIVKTFAIDENEMGSTAINDAMQTAYDTII-SSNEDEVHRMKNNLEAKKYIVLLTDGENTQD--------------- 382 (458) Q Consensus 319 ~~~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls-~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~--------------- 382 (458) .+...+...+..+.+.|||+.++++.+|.+... ..++..| ..+.+|+|||+|||..+.. T Consensus 90 ~~~~~~~~~i~~~~~~GG~D~~E~~~~al~~a~~~~~~~~~-----~~~~~k~iilitDa~~h~~~~~~~~~~~~~~~~~ 164 (244) T 3fcs_B 90 DQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGW-----RNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQ 164 (244) T ss_dssp SCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTC-----CSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCC T ss_pred CCHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHCCCCCCC-----CCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCC T ss_conf 77899999876266337878865105455554313022565-----6785399999846763215666313364378763 Q ss_pred ----------------CCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH---CCCCC-EEEECCHHHHHHHHH Q ss_conf ----------------5408999999998796899999437887431178999860---68983-788299899999999 Q gi|254780388|r 383 ----------------NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNC---ASPNS-FFEANSTHELNKIFR 442 (458) Q Consensus 383 ----------------~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~C---As~~~-yy~a~~~~eL~~aF~ 442 (458) .......-.+++..++..+..-... ....++.- .+... -.......+|.+... T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~y~~~~~~~~~~~~~~~~~~~~~i~~~i~ 237 (244) T 3fcs_B 165 CHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTEN-------VVNLYQNYSELIPGTTVGVLSMDSSNVLQLIV 237 (244) T ss_dssp CCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGG-------GHHHHHHHHHHSTTCEEEEECTTCTTHHHHHH T ss_pred CEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC-------HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH T ss_conf 02078886243455788999999999987196799996410-------36799999976676435662567536899999 Q ss_pred HHHHH Q ss_conf 99875 Q gi|254780388|r 443 DRIGN 447 (458) Q Consensus 443 ~~i~~ 447 (458) +.|.+ T Consensus 238 ~~~~k 242 (244) T 3fcs_B 238 DAYGK 242 (244) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99987 No 25 >>3k6s_B Integrin beta-2; hetero dimer, cell receptor, adhesion molecule, calcium, cell adhesion, disulfide bond, glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* (B:102-342) Probab=98.19 E-value=3.6e-06 Score=57.38 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=69.6 Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC----------------- Q ss_conf 566665641256777776458899999862366665444456677750699999606688885----------------- Q gi|254780388|r 321 RTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDN----------------- 383 (458) Q Consensus 321 ~~~~~~~i~~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~----------------- 383 (458) ...+...|+.+.+.|||+.++++..|.......... ...++..|+|||+||+..+... T Consensus 91 ~~~~~~~i~~~~a~GGgD~~E~~~~al~~a~~~~~~-----~~~~~~~k~iilitDa~~h~~~~~~~~~~~~~~~~~~~~ 165 (241) T 3k6s_B 91 SNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEE-----IGWRNVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHL 165 (241) T ss_dssp SHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHH-----HCCCSSCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCC T ss_pred HHHHHHHHHHEECCCCCCCCCCCHHHHHHHHEECCC-----CCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEE T ss_conf 899999986346215877876214243321000232-----343254389999866873205665202364278885375 Q ss_pred -------------CHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHC--CCCCEEE--ECCHHHHHHHHHHHHH Q ss_conf -------------4089999999987968999994378874311789998606--8983788--2998999999999987 Q gi|254780388|r 384 -------------EEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA--SPNSFFE--ANSTHELNKIFRDRIG 446 (458) Q Consensus 384 -------------~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CA--s~~~yy~--a~~~~eL~~aF~~~i~ 446 (458) .......+.++.+++..+.+..+ .....++.-+ .++.++. .....+|.+.+.+.+. T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 238 (241) T 3k6s_B 166 EDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTS-------RMVKTYEKLTEIIPKSAVGELSEDSSNVVQLIKNAYN 238 (241) T ss_dssp SSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECG-------GGHHHHHHHHHHSSSCCEEECCTTCCSCGGGTTTHHH T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC-------CHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 588445677577888899999998629469999644-------2266999998756863477604674779999999997 No 26 >>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:1-107,A:244-301) Probab=46.97 E-value=9.8 Score=16.28 Aligned_cols=75 Identities=11% Similarity=0.011 Sum_probs=32.7 Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC---CCCEEEECCHHHHHHHHHHHH Q ss_conf 69999960668888540899999999879689999943788743117899986068---983788299899999999998 Q gi|254780388|r 369 KYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS---PNSFFEANSTHELNKIFRDRI 445 (458) Q Consensus 369 K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs---~~~yy~a~~~~eL~~aF~~~i 445 (458) ++.+++.+-.+........++.+.+++.|+++..++... ...+....+++.|.. ++-.....+.+++.++++.+. T Consensus 5 ~IgvI~p~~~~~f~~~i~~Gi~~aa~~~Gy~vil~~~s~--~d~~~q~~~i~~li~~~vDGIIi~~~~~~~~~~~i~~l~ 82 (165) T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAM 82 (165) T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHH T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH T ss_conf 899994999999999999999999998199899997999--999999999999997399744201333202456888765 No 27 >>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:118-235) Probab=46.00 E-value=15 Score=15.02 Aligned_cols=80 Identities=11% Similarity=0.079 Sum_probs=52.8 Q ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHH Q ss_conf 77506999996066888854089999999987968999994378874311789998606898378829989999999999 Q gi|254780388|r 365 LEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDR 444 (458) Q Consensus 365 ~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~ 444 (458) ++.+|+.++.+-++.+. ....+.+-+.++..|+++....+... ......++..+..-.........-+.++++.+ T Consensus 14 P~~k~vgvly~~~e~~s-~~~~~~l~~~a~~~Gi~l~~~~v~~~----~di~~~~~~~~~~~dai~~~~d~~v~s~~~~i 88 (118) T 3lft_A 14 PNVKTIGALYSSSEDNS-KTQVEEFKAYAEKAGLTVETFAVPST----NEIASTVTVXTSKVDAIWVPIDNTIASGFPTV 88 (118) T ss_dssp TTCCEEEEEEETTCHHH-HHHHHHHHHHHHHTTCEEEEEEESSG----GGHHHHHHHHTTTCSEEEECSCHHHHHTHHHH T ss_pred CCCCEEEEECCCCCHHH-HHHHHHHHHHHHHCCCEEEEECCCCH----HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH T ss_conf 78864689669753129-99999999866641756875046667----99999998367886199973870688899999 Q ss_pred HHHHH Q ss_conf 87587 Q gi|254780388|r 445 IGNEI 449 (458) Q Consensus 445 i~~~~ 449 (458) +.... T Consensus 89 ~~~a~ 93 (118) T 3lft_A 89 VSSNQ 93 (118) T ss_dssp HHHTT T ss_pred HHHHC T ss_conf 98520 No 28 >>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* (A:170-304,A:441-482) Probab=44.25 E-value=16 Score=14.85 Aligned_cols=79 Identities=5% Similarity=-0.037 Sum_probs=53.9 Q ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEE-EEEEECCCCCCCCHHHHHHHHH-C-CCCCEEEECCHHHHHHHH Q ss_conf 775069999960668888540899999999879689-9999437887431178999860-6-898378829989999999 Q gi|254780388|r 365 LEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRI-MTIAFSVNKTQQEKARYFLSNC-A-SPNSFFEANSTHELNKIF 441 (458) Q Consensus 365 ~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~I-ytI~f~~~~~~~~~~~~~lk~C-A-s~~~yy~a~~~~eL~~aF 441 (458) .+.+|+.|+..| +..+......+=+.++..|++| +...|....+........++.. . .++-++...+..+....| T Consensus 15 ~gwk~VaII~~d--d~yG~~~~~~l~~~~~~~Gi~V~~~~~~~~~~~~~~d~~~~l~~i~~s~~~vVv~~~~~~~~~~il 92 (177) T 2e4u_A 15 FNWTYVSTVASE--GDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELI 92 (177) T ss_dssp TTCCEEEEEEES--STTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHH T ss_pred HCCCEEEEEEEC--CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH T ss_conf 299589999844--066779999999988864834999996578875777888777776526870899972508999999 Q ss_pred HHHH Q ss_conf 9998 Q gi|254780388|r 442 RDRI 445 (458) Q Consensus 442 ~~~i 445 (458) +++- T Consensus 93 ~~a~ 96 (177) T 2e4u_A 93 AAAN 96 (177) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 29 >>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:1-108,A:243-305) Probab=37.64 E-value=21 Score=14.20 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=6.3 Q ss_pred HHHHHHHHCCCEEEEE Q ss_conf 9999999879689999 Q gi|254780388|r 388 AICNKAKSQGIRIMTI 403 (458) Q Consensus 388 ~~C~~~K~~gI~IytI 403 (458) ...++++++||.|.+| T Consensus 77 ~~i~~a~~~gIPVV~i 92 (171) T 3g1w_A 77 DTINKAVDAGIPIVLF 92 (171) T ss_dssp HHHHHHHHTTCCEEEE T ss_pred HHHHHHHHCCCCEEEE T ss_conf 9999999869929998 No 30 >>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* (A:147-389) Probab=36.43 E-value=17 Score=14.79 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=31.4 Q ss_pred CCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC Q ss_conf 67775069999960668888540899999999879689999943788 Q gi|254780388|r 363 NNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNK 409 (458) Q Consensus 363 ~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~ 409 (458) ....++++.|+.+||-| -.....+|+.+|++|..|=-|.||.++ T Consensus 195 ~~~~~~~~~Ii~Sdgld---~~ki~~i~~~~~~~g~~~d~~~fGvGt 238 (243) T 3dhf_A 195 YKLLPPYLRVIQGDGVD---INTLQEIVEGMKQKMWSIENIAFGSGG 238 (243) T ss_dssp CEECCTTEEEEECSSCS---HHHHHHHHHHHHHTTBCGGGEEEEESH T ss_pred CCCCCCCCEEEECCCCC---HHHHHHHHHHHHHCCCCCCCCEEECCC T ss_conf 22466531599558989---999999999998669877752220145 No 31 >>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} (A:) Probab=33.00 E-value=24 Score=13.73 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=24.4 Q ss_pred HHHCC-CCCE-EEECCHHHHHHHHHHHHHHHHHH Q ss_conf 86068-9837-88299899999999998758753 Q gi|254780388|r 420 SNCAS-PNSF-FEANSTHELNKIFRDRIGNEIFE 451 (458) Q Consensus 420 k~CAs-~~~y-y~a~~~~eL~~aF~~~i~~~~~~ 451 (458) +.|.+ +|.| |....+++|.+.|+..|..+... T Consensus 75 Rrc~tG~G~f~f~t~~~~~I~~~i~~~i~~~~~~ 108 (127) T 1p5t_A 75 RRCPSGPGTFTFQTSQGNDIFQAVEAAIQQQKAQ 108 (127) T ss_dssp TTSTTCSEEEEEECSCHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHC T ss_conf 8678898079998489999999999999974525 No 32 >>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid binding, structural genomics; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* (A:181-319,A:446-496) Probab=31.68 E-value=26 Score=13.59 Aligned_cols=80 Identities=10% Similarity=0.001 Sum_probs=52.1 Q ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEE-EEEEECCCCCCC--CHHHHHHH-HHCCCCCEEEECCHHHHHHHH Q ss_conf 75069999960668888540899999999879689-999943788743--11789998-606898378829989999999 Q gi|254780388|r 366 EAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRI-MTIAFSVNKTQQ--EKARYFLS-NCASPNSFFEANSTHELNKIF 441 (458) Q Consensus 366 ~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~I-ytI~f~~~~~~~--~~~~~~lk-~CAs~~~yy~a~~~~eL~~aF 441 (458) +..++.++.+|+ +.+......+.+.++..||.| ++..|....... +....+++ ....+.-..--.+..++...| T Consensus 16 gW~~V~iI~~d~--~YG~~~~~~f~~~~~~~gi~I~~~~~~~~~~~~~~~d~~~~l~~i~~~~a~vVv~~~~~~~~~~il 93 (190) T 3ks9_A 16 NWTYVSAVHTEG--NYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLL 93 (190) T ss_dssp TCCEEEEEEESS--HHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHH T ss_pred CCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHH T ss_conf 997899999536--788899999999999759879999982689987899999999887402642799984679999999 Q ss_pred HHHHHH Q ss_conf 999875 Q gi|254780388|r 442 RDRIGN 447 (458) Q Consensus 442 ~~~i~~ 447 (458) +++... T Consensus 94 ~~a~~~ 99 (190) T 3ks9_A 94 SAMRRL 99 (190) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999983 No 33 >>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} (A:1-54,A:291-409) Probab=31.36 E-value=26 Score=13.56 Aligned_cols=19 Identities=5% Similarity=0.058 Sum_probs=11.7 Q ss_pred EECCHHHHHHHHHHHHHHHH Q ss_conf 82998999999999987587 Q gi|254780388|r 430 EANSTHELNKIFRDRIGNEI 449 (458) Q Consensus 430 ~a~~~~eL~~aF~~~i~~~~ 449 (458) ++.+.++|.++++ ++.+.+ T Consensus 145 ya~~~e~L~~ai~-rL~~al 163 (173) T 2gb3_A 145 CVLEKDLLSRAID-VLXEGL 163 (173) T ss_dssp CCSCHHHHHHHHH-HHHHHH T ss_pred ECCCHHHHHHHHH-HHHHHH T ss_conf 7389999999999-999999 No 34 >>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} (A:) Probab=30.19 E-value=27 Score=13.44 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=23.3 Q ss_pred HHHCC-CCCE-EEECCHHHHHHHHHHHHHHHHH Q ss_conf 86068-9837-8829989999999999875875 Q gi|254780388|r 420 SNCAS-PNSF-FEANSTHELNKIFRDRIGNEIF 450 (458) Q Consensus 420 k~CAs-~~~y-y~a~~~~eL~~aF~~~i~~~~~ 450 (458) +.|.+ +|.| |....+++|.+.++..|..+.. T Consensus 68 R~c~~G~G~f~f~t~~~~~I~~~i~~~i~~~~~ 100 (103) T 1j0w_A 68 RXCETGEGLFIFQTRDGEAIYQKVHSAALAIAE 100 (103) T ss_dssp SSSSSCSEEEEEECSCHHHHHHHHHHHHHHSTT T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH T ss_conf 867889828999848999999999999998876 No 35 >>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:1-106,A:247-290) Probab=29.76 E-value=28 Score=13.39 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=9.5 Q ss_pred HHHHHHHHHCCCEEEEEEE Q ss_conf 9999999987968999994 Q gi|254780388|r 387 IAICNKAKSQGIRIMTIAF 405 (458) Q Consensus 387 ~~~C~~~K~~gI~IytI~f 405 (458) ....+.++++||.+.+|.- T Consensus 73 ~~~i~~l~~~gIPvV~id~ 91 (150) T 2fn9_A 73 IANVKRAKEAGIPVFCVDR 91 (150) T ss_dssp HHHHHHHHHTTCCEEEESS T ss_pred HHHHHHHHHCCCCCEEECC T ss_conf 9999999975996256436 No 36 >>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:1-108,A:245-290) Probab=28.55 E-value=29 Score=13.26 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=35.0 Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCC---CCCEEEECCHHHHHHHHHHH Q ss_conf 069999960668888540899999999879689999943788743117899986068---98378829989999999999 Q gi|254780388|r 368 KKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS---PNSFFEANSTHELNKIFRDR 444 (458) Q Consensus 368 ~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs---~~~yy~a~~~~eL~~aF~~~ 444 (458) .++.+++.+-.+........++.+.+++.|..+..+.-.. +........++.+.+ ++-.+...+..++.+.++.+ T Consensus 5 ~tIGVivp~~~~pf~~~i~~Gie~aa~~~Gy~vil~~~s~--~d~~~q~~~ie~li~q~VDGIIi~~~d~~~~~~~i~~l 82 (154) T 3d02_A 5 KTVVNISKVDGXPWFNRXGEGVVQAGKEFNLNASQVGPSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (154) T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH T ss_conf 8899997889997999999999999997499899997899--99999999999999759998999425841104899999 Q ss_pred H Q ss_conf 8 Q gi|254780388|r 445 I 445 (458) Q Consensus 445 i 445 (458) . T Consensus 83 ~ 83 (154) T 3d02_A 83 R 83 (154) T ss_dssp H T ss_pred H T ss_conf 9 No 37 >>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:1-104,A:238-283) Probab=28.09 E-value=29 Score=13.21 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=6.4 Q ss_pred HHHHHHHHCCCEEEEE Q ss_conf 9999999879689999 Q gi|254780388|r 388 AICNKAKSQGIRIMTI 403 (458) Q Consensus 388 ~~C~~~K~~gI~IytI 403 (458) ..-+.+++.||.+.++ T Consensus 73 ~~~~~l~~~gIPvV~i 88 (150) T 2ioy_A 73 TAIKEANSKNIPVITI 88 (150) T ss_dssp HHHHHHHHTTCCEEEE T ss_pred CCCHHHHCCCCEEEEE T ss_conf 0000233157528998 No 38 >>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} (A:75-312) Probab=27.27 E-value=30 Score=13.12 Aligned_cols=10 Identities=20% Similarity=0.285 Sum_probs=3.8 Q ss_pred EEECCCCCCC Q ss_conf 9960668888 Q gi|254780388|r 373 LLTDGENTQD 382 (458) Q Consensus 373 l~TDG~n~~~ 382 (458) +++||-++.. T Consensus 74 ~f~DGRDt~P 83 (238) T 1o98_A 74 GFLDGRDVGP 83 (238) T ss_dssp EEECSSSSCT T ss_pred EECCCCCCCC T ss_conf 8414666783 No 39 >>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} (A:134-264) Probab=26.75 E-value=31 Score=13.06 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=24.0 Q ss_pred HHHCC-CCCE-EEECCHHHHHHHHHHHHHHHHHH Q ss_conf 86068-9837-88299899999999998758753 Q gi|254780388|r 420 SNCAS-PNSF-FEANSTHELNKIFRDRIGNEIFE 451 (458) Q Consensus 420 k~CAs-~~~y-y~a~~~~eL~~aF~~~i~~~~~~ 451 (458) +.|.+ +|.| |....++++...|+.++.+..++ T Consensus 91 Rrc~tGeG~f~f~t~~~~~i~~~~~~~~~~~~~~ 124 (131) T 1qqg_A 91 RSAVTGPGEFWMQVDDSVVAQNMHETILEAMRAM 124 (131) T ss_dssp TTSTTCSEEEEEECSCHHHHHHHHHHHHHHHHGG T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 5379998339998289479999999999999975 No 40 >>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens} (A:) Probab=26.29 E-value=32 Score=13.00 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=23.0 Q ss_pred HHHCC-CCC-EEEECCHHHHHHHHHHHHHHHH Q ss_conf 86068-983-7882998999999999987587 Q gi|254780388|r 420 SNCAS-PNS-FFEANSTHELNKIFRDRIGNEI 449 (458) Q Consensus 420 k~CAs-~~~-yy~a~~~~eL~~aF~~~i~~~~ 449 (458) +.|.+ +|. +|....++||.+.++..|..+. T Consensus 73 Rrc~tGeG~f~f~t~~a~~I~~~i~~~i~~~~ 104 (107) T 2v76_A 73 RRCPSGPGTFTFQTAQGNDIFQAVETAIHRQK 104 (107) T ss_dssp TTSTTCSEEEEEECSCHHHHHHHHHHHHHHC- T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 88888973899985899999999999999765 No 41 >>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} (A:237-397,A:442-503) Probab=24.38 E-value=34 Score=12.78 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=6.3 Q ss_pred HHHHHHCCCEEEEEEEC Q ss_conf 99999879689999943 Q gi|254780388|r 390 CNKAKSQGIRIMTIAFS 406 (458) Q Consensus 390 C~~~K~~gI~IytI~f~ 406 (458) +--+|+.+.+|.++.|. T Consensus 19 aall~~~g~~V~a~t~~ 35 (223) T 1q15_A 19 TALASRHFKKLNTYSIG 35 (223) T ss_dssp HHHHTTTCSEEEEEEEE T ss_pred HHHHHHCCCCEEECCCC T ss_conf 99876203430001257 No 42 >>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387) Probab=23.81 E-value=35 Score=12.71 Aligned_cols=75 Identities=8% Similarity=0.071 Sum_probs=34.1 Q ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE---EEEECCCCCCCCHHHHHHHHHC-C-CCCEEEECCHHHHHH Q ss_conf 7750699999606688885408999999998796899---9994378874311789998606-8-983788299899999 Q gi|254780388|r 365 LEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIM---TIAFSVNKTQQEKARYFLSNCA-S-PNSFFEANSTHELNK 439 (458) Q Consensus 365 ~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~Iy---tI~f~~~~~~~~~~~~~lk~CA-s-~~~yy~a~~~~eL~~ 439 (458) ...+|+.|+..|. ..+......+=+.+++.|++|- .+.+..+ ..+.. ..++... + ++-.+....+.++.. T Consensus 16 ~g~kkVaII~~d~--~yG~~~~~~f~~~l~~~G~~V~~~~~i~~~~~--~~d~~-~~i~kik~a~pdvVi~~~~~~~a~~ 90 (200) T 3i45_A 16 LPITRWATIAPNY--EYGQSAVARFKELLLAARPEVTFVAEQWPALY--KLDAG-PTVQALQQAEPEGLFNVLFGADLPK 90 (200) T ss_dssp SSCCEEEEECCSS--HHHHHHHHHHHHHHHHHCTTCEEEEEECCCTT--CCCHH-HHHHHHHHTCCSEEEECCCTTHHHH T ss_pred CCCCEEEECCCCC--HHHHHHHHHHHHHHHHCCCCEEEEEEEEECCC--CCHHH-HHHHHHHHCCCCEEEEEECCHHHHH T ss_conf 2871785447896--78899999888777523661368876640266--51167-8988888609838999933378999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780388|r 440 IFRDR 444 (458) Q Consensus 440 aF~~~ 444 (458) .++++ T Consensus 91 ~ikqa 95 (200) T 3i45_A 91 FVREG 95 (200) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 43 >>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:45-75,A:314-427) Probab=23.54 E-value=31 Score=13.09 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=36.4 Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHH Q ss_conf 5408999999998796899999437887431178999860689837882998999999999987587535 Q gi|254780388|r 383 NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIFER 452 (458) Q Consensus 383 ~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~~yy~a~~~~eL~~aF~~~i~~~~~~~ 452 (458) ......+|+.++++||-+.++.+........ .++=|.+.. +.-.+-+++.+++++ +.++.... T Consensus 74 ~~~~~~l~~~L~~~GI~v~~~~~PavP~~~~----~iRis~t~~--~T~edId~li~aL~~-i~~~l~~~ 136 (145) T 2w8t_A 74 QEQAAMMWQALLDGGLYVNMARPPATPAGTF----LLRCSICAE--HTPAQIQTVLGMFQA-AGRAVGVI 136 (145) T ss_dssp HHHHHHHHHHHHHTTEECEEECTTTSCTTCE----EEEEECCTT--CCHHHHHHHHHHHHH-HHHHHTCC T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCE----EEEEEECCC--CCHHHHHHHHHHHHH-HHHHHCCC T ss_conf 9999999999983894187789998899970----699984755--899999999999999-99984967 No 44 >>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* (B:88-326) Probab=22.55 E-value=37 Score=12.55 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=18.3 Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCE-EEEEEE Q ss_conf 999996066888854089999999987968-999994 Q gi|254780388|r 370 YIVLLTDGENTQDNEEGIAICNKAKSQGIR-IMTIAF 405 (458) Q Consensus 370 ~iil~TDG~n~~~~~~~~~~C~~~K~~gI~-IytI~f 405 (458) +|-|+|||--...-....++++.+|++||+ ||.=.| T Consensus 39 l~GL~SdGGVHSh~~Hl~ali~~a~~~gv~~V~vH~f 75 (239) T 3igz_B 39 LIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHAL 75 (239) T ss_dssp EEEECSSCCSSCCHHHHHHHHHHHHHTTCCEEEEEEE T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 8997417641101778999999999739984489998 No 45 >>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242) Probab=21.71 E-value=39 Score=12.45 Aligned_cols=76 Identities=8% Similarity=0.026 Sum_probs=50.7 Q ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE-EEEECCCCCCCCHHHHHHHHHC--CCCCEEEECCHHHHHHHH Q ss_conf 7750699999606688885408999999998796899-9994378874311789998606--898378829989999999 Q gi|254780388|r 365 LEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIM-TIAFSVNKTQQEKARYFLSNCA--SPNSFFEANSTHELNKIF 441 (458) Q Consensus 365 ~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~Iy-tI~f~~~~~~~~~~~~~lk~CA--s~~~yy~a~~~~eL~~aF 441 (458) ...+|+.++..|. ..++.....+=+.+++.|++|- .+.|..+.. +.. ..++... .++-.|....+.++...+ T Consensus 14 ~~~~~v~ii~~d~--~~g~~~~~~~~~~l~~~G~~iv~~~~~~~~~~--d~~-~~i~~i~~~~~d~v~~~~~~~~~~~i~ 88 (119) T 3hut_A 14 DGFTSVAVIGVTT--DWGLSSAQAFRKAFELRGGAVVVNEEVPPGNR--RFD-DVIDEIEDEAPQAIYLAXAYEDAAPFL 88 (119) T ss_dssp TTCCEEEEEEESS--HHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC--CCH-HHHHHHHHHCCSEEEEESCHHHHHHHH T ss_pred CCCCEEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC--CHH-HHHHHHHHCCCCEEEEECCHHHHHHHH T ss_conf 0781699960567--26589999986445406978999995599873--115-899999865999999973668899999 Q ss_pred HHHH Q ss_conf 9998 Q gi|254780388|r 442 RDRI 445 (458) Q Consensus 442 ~~~i 445 (458) +++- T Consensus 89 ~~~~ 92 (119) T 3hut_A 89 RALR 92 (119) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 Done!