HHsearch results for GI: 254780388 and protein with PDBid: 1mf7_A
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=99.31 E-value=2.9e-11 Score=88.89 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=99.7
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 520121100677665565576812100566665641256-7777764588999998623666654444566777506999
Q gi|254780388|r 294 TVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN-EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIV 372 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ii 372 (458)
..+.+...|+.......++.+ ..+...+...|..+. ..|+|+...+|.++.+.+...... ..+...|++|
T Consensus 41 ~~rvgvv~f~~~~~~~~~l~~---~~~~~~~~~~i~~l~~~~g~t~~~~al~~a~~~~~~~~~~------~~~~~~kvvv 111 (194)
T 1mf7_A 41 KTLFSLMQYSEEFRIHFTFKE---FQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITNG------ARKNAFKILV 111 (194)
T ss_dssp TEEEEEEEESSSEEEEECHHH---HHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGT------CCTTSEEEEE
T ss_pred CCEEEEEEEEEEEEEEECCCC---CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCCCCEEEE
T ss_conf 808999996540377511466---3668999987641342369866999999999987414326------7677664999
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCC---CEEEECCHHHHHHHHHHHHHH
Q ss_conf 996066888854089999999987968999994378874311789998606898---378829989999999999875
Q gi|254780388|r 373 LLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPN---SFFEANSTHELNKIFRDRIGN 447 (458)
Q Consensus 373 l~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~~---~yy~a~~~~eL~~aF~~~i~~ 447 (458)
++|||..+.........-..+|..||+||+||++...+. ......|+.+|+.+ ++|.+.+.++|.+.++++..+
T Consensus 112 l~tDG~~~~~~~~~~~~~~~l~~~gv~v~~Vgi~~~~~~-~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~ 188 (194)
T 1mf7_A 112 VITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRS-EKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREK 188 (194)
T ss_dssp EEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCS-HHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 994788789804499999999977999999997887666-34699999986699866089949999999999999876