HHsearch results for GI: 254780388 and protein with PDBid: 1yvr_A
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=93.07 E-value=0.36 Score=24.46 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=52.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH---HCCCEEEEEEECC
Q ss_conf 5677777645889999986236666544445667775069999960668888540899999999---8796899999437
Q gi|254780388|r 331 ENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAK---SQGIRIMTIAFSV 407 (458)
Q Consensus 331 ~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K---~~gI~IytI~f~~ 407 (458)
..+.|+|++...|.|+.+.- ...+.+|++|||+++.+......+-+..| +.+.++++|++..
T Consensus 439 ~~~~ggT~~~~~i~~a~~~~---------------~~~D~~IvlTD~e~~~g~~~p~~al~~Yr~k~~~~ak~v~v~l~~ 503 (538)
T 1yvr_A 439 DITMGSTDCALPMLWAQKTN---------------TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTS 503 (538)
T ss_dssp TCCCSCCCTTHHHHHHHHTT---------------CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSS
T ss_pred CCCCCCCCHHHHHHHHHHCC---------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 36789861899999999615---------------568989998179977898899999999999848997599998568
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEE----ECCHHHHHHHH
Q ss_conf 88743117899986068983788----29989999999
Q gi|254780388|r 408 NKTQQEKARYFLSNCASPNSFFE----ANSTHELNKIF 441 (458)
Q Consensus 408 ~~~~~~~~~~~lk~CAs~~~yy~----a~~~~eL~~aF 441 (458)
.+.... + ....+.++ .+..-++.++|
T Consensus 504 ~~~s~~-------~-~~~~n~l~I~Gfs~~v~~~I~~f 533 (538)
T 1yvr_A 504 NGFSIA-------D-PDDRGMLDICGFDSGALDVIRNF 533 (538)
T ss_dssp SSEESS-------C-TTCTTEEEEETTCTTHHHHHHHH
T ss_pred CCCCCC-------C-CCCCCEEEEECCCHHHHHHHHHH
T ss_conf 987777-------8-89999589855877899999999