HHSEARCH alignment of GI: 254780388 and SCOP domain: d1jeyb2

Alignment

Probab=98.88  E-value=3.6e-08  Score=67.62  Aligned_cols=132  Identities=11%  Similarity=-0.000  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHH----------HHHHHHHHHH-HHCCCCCCC
Q ss_conf             43306677766522112346775666520121100677665565576812----------1005666656-412567777
Q gi|254780388|r  268 IKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVH----------KLIRTIVKTF-AIDENEMGS  336 (458)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-i~~~~~~g~  336 (458)
                      .++++..+.++..++.......+.   .+.+.+.|++......+.+....          .......... .......+.
T Consensus        23 ~srl~~ak~~~~~~v~~~~~~~~~---d~vglV~f~~~~t~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (236)
T d1jeyb2          23 ESPFEQAKKVITMFVQRQVFAENK---DEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQ   99 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCC---CEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCCCCSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCC---CEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             998999999999999998428999---75999997377765665655663047997413220156777776530246555


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             7645889999986236666544445667775069999960668888540899999999879689999943788
Q gi|254780388|r  337 TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNK  409 (458)
Q Consensus       337 T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~  409 (458)
                      |+...+|..+...+.....       ..+...|.|||+|||+++.+......+.+.+|+.||+||+||++...
T Consensus       100 ~~~~~al~~a~~~~~~~~~-------~~~~~~r~IiL~TDG~~~~~~~~~~~~a~~l~~~~I~i~~ig~g~~~  165 (236)
T d1jeyb2         100 ADFLDALIVSMDVIQHETI-------GKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLG  165 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHSS-------SSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHH-------CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             5504788999988777640-------46656517999936998768378999999998759889999447767

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]