HHSEARCH alignment of GI: 254780388 and SCOP domain: d1n3ya_

Alignment

Probab=99.42  E-value=4.4e-12  Score=92.65  Aligned_cols=144  Identities=15%  Similarity=0.169  Sum_probs=100.1

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             520121100677665565576812100566665641256-7777764588999998623666654444566777506999
Q gi|254780388|r  294 TVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN-EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIV  372 (458)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~ii  372 (458)
                      ..+.+...|+.......++...   .+...+...+..+. .+|+|+...+|.++.+.+.......      .++..|++|
T Consensus        38 ~~rv~vv~fs~~~~~~~~l~~~---~~~~~~~~~i~~~~~~~g~t~~~~al~~a~~~~f~~~~~~------r~~~~kviv  108 (189)
T d1n3ya_          38 STQFSLMQFSNKFQTHFTFEEF---RRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGA------RRDAAKILI  108 (189)
T ss_dssp             TEEEEEEEESSSEEEEECHHHH---HHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTC------CTTSEEEEE
T ss_pred             CCEEEEEEEECCCEEECCCCCC---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC------CCCCCEEEE
T ss_conf             8789999953121010023540---0288999998754343300138999999999984111278------888732799


Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCC---CCEEEECCHHHHHHHHHHHHHH
Q ss_conf             99606688885408999999998796899999437887431178999860689---8378829989999999999875
Q gi|254780388|r  373 LLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASP---NSFFEANSTHELNKIFRDRIGN  447 (458)
Q Consensus       373 l~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~~~~~~~lk~CAs~---~~yy~a~~~~eL~~aF~~~i~~  447 (458)
                      ++|||..+........++..+|+.||.||+||++...+... ...-|+.+||.   +++|.+.+-++|.+.++++..+
T Consensus       109 llTDG~~~~~~~~~~~~~~~~~~~gv~i~~Vgig~~~~~~~-~~~~L~~ias~~~~~~~~~~~~~~~l~~i~~~i~~~  185 (189)
T d1n3ya_         109 VITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRN-SWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEK  185 (189)
T ss_dssp             EEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSST-THHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHH
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC-CHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf             99568988883239999999998799438983365556633-399999996699866089828999999999999975

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha-x beta2
species: Human (Homo sapiens) [TaxId: 9606]