HHSEARCH alignment of GI: 254780388 and SCOP domain: d1pt6a_

Alignment

Probab=99.29  E-value=1.6e-10  Score=82.58  Aligned_cols=143  Identities=18%  Similarity=0.176  Sum_probs=95.2

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE
Q ss_conf             65201211006776655655768121005666656412567777--7645889999986236666544445667775069
Q gi|254780388|r  293 DTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGS--TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY  370 (458)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~  370 (458)
                      ...+.+...|+.......++...   .++..+...+..+...++  ++...++.++...+....++.      .++..|+
T Consensus        36 ~~~rv~vv~fs~~~~~~~~l~~~---~~~~~~~~~i~~~~~~~g~~~~~~~al~~~~~~~~~~~~g~------R~~~~kv  106 (192)
T d1pt6a_          36 KQTQVGIVQYGENVTHEFNLNKY---SSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGA------RRGVKKV  106 (192)
T ss_dssp             TSBEEEEEEESSSEEEEECTTTC---SSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTC------CTTCEEE
T ss_pred             CCCEEEEEEEECCEEEEEECCCC---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC------CCCCCEE
T ss_conf             87379999984127899727764---04689999886555442211015789877777630123589------8886158


Q ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC----CHHHHHHHHHCCC---CCEEEECCHHHHHHHHHH
Q ss_conf             999960668888540899999999879689999943788743----1178999860689---837882998999999999
Q gi|254780388|r  371 IVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ----EKARYFLSNCASP---NSFFEANSTHELNKIFRD  443 (458)
Q Consensus       371 iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~~----~~~~~~lk~CAs~---~~yy~a~~~~eL~~aF~~  443 (458)
                      +|++|||..+.. ......++.+|++||+||+||++...+..    ....+-|+.+||.   .++|.+.+-.+|.+.+++
T Consensus       107 iillTDG~~~d~-~~~~~~a~~lk~~gi~v~~igvg~~~~~~~~~~~~~~~~L~~IAs~p~~~~~f~v~d~~~L~~i~~~  185 (192)
T d1pt6a_         107 MVIVTDGESHDN-HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKT  185 (192)
T ss_dssp             EEEEESSCCSCS-HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHH
T ss_pred             EEEEECCCCCCC-HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHH
T ss_conf             999966887763-0269999999977996999997055554543431369999998669985508983899999999999


Q ss_pred             HH
Q ss_conf             98
Q gi|254780388|r  444 RI  445 (458)
Q Consensus       444 ~i  445 (458)
                      +.
T Consensus       186 i~  187 (192)
T d1pt6a_         186 LG  187 (192)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             98

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha1-beta1
species: Human (Homo sapiens) [TaxId: 9606]