HHSEARCH alignment of GI: 254780388 and SCOP domain: d1q0pa_

Alignment
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51  E-value=2.3e-13  Score=100.80  Aligned_cols=167  Identities=13%  Similarity=0.122  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC-----CCCCCCCCHHHHHHH
Q ss_conf             667776652211234677566652012110067766556557681210056666564125-----677777645889999
Q gi|254780388|r  272 HLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDE-----NEMGSTAINDAMQTA  346 (458)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~g~T~~~~gl~~g  346 (458)
                      +..+.++..++..+...   ....+.+...|+.......++..... .....+...++.+     .+.|+|+...+|.++
T Consensus        20 ~~~k~~~~~li~~l~~~---~~~~rv~lv~f~~~~~~~~~l~~~~~-~~~~~l~~~i~~i~~~~~~~~g~t~~~~al~~a   95 (209)
T d1q0pa_          20 TGAKKSLVNLIEKVASY---GVKPRYGLVTYATYPKIWVKVSEADS-SNADWVTKQLNEINYEDHKLKSGTNTKKALQAV   95 (209)
T ss_dssp             HHHHHHHHHHHHHHHTT---TCCCEEEEEEESSSEEEEECTTSGGG-GCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCC---CCCCEEEEEEECCCEEEEECCCCCHH-HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             99999999999961047---88767999996585058864765116-678999999997210136678885498999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHH------------HHHHHHCCCEEEEEEECCCCCCCCH
Q ss_conf             9862366665444456677750699999606688885408999------------9999987968999994378874311
Q gi|254780388|r  347 YDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAI------------CNKAKSQGIRIMTIAFSVNKTQQEK  414 (458)
Q Consensus       347 ~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~------------C~~~K~~gI~IytI~f~~~~~~~~~  414 (458)
                      ...+.....+..   ...++..|++||+|||..+.........            +..++..||.||+||++...+    
T Consensus        96 ~~~~~~~~~~~~---~~~~~~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~vgvg~~~~----  168 (209)
T d1q0pa_          96 YSMMSWPDDVPP---EGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN----  168 (209)
T ss_dssp             HHHHCCTTSSCC---TTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCC----
T ss_pred             HHHHHHHHCCCC---CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC----
T ss_conf             999975222476---5667775189997578766789858999999985443789999986699559842776689----


Q ss_pred             HHHHHHHHCC-C---CCEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             7899986068-9---8378829989999999999875875
Q gi|254780388|r  415 ARYFLSNCAS-P---NSFFEANSTHELNKIFRDRIGNEIF  450 (458)
Q Consensus       415 ~~~~lk~CAs-~---~~yy~a~~~~eL~~aF~~~i~~~~~  450 (458)
                       ...|+.+|+ +   .+||.+.+.++|.++|.+|+.+..+
T Consensus       169 -~~~L~~iAs~~~~~~~~f~~~~~~~L~~~~~~ii~~~~s  207 (209)
T d1q0pa_         169 -QVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQS  207 (209)
T ss_dssp             -HHHHHHHSCCCTTCCCEEETTC-----------------
T ss_pred             -HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf             -999999974989971599938999999999999885257


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]