HHSEARCH alignment of GI: 254780388 and SCOP domain: d1v7pc_

Alignment
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.18  E-value=1.1e-09  Score=77.37  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=102.7

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHCC
Q ss_conf             7766522112346775666520121100677665565576812100566665641256--77777645889999986236
Q gi|254780388|r  275 RDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN--EMGSTAINDAMQTAYDTIIS  352 (458)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~g~T~~~~gl~~g~~~Ls~  352 (458)
                      +.....++.....   .....+.+...|+.......++...   .+...+...+..+.  .+|+|+...+|.++.+.+..
T Consensus        21 k~f~~~ii~~~~i---~~~~~rv~vv~fs~~~~~~~~l~~~---~~~~~~~~~i~~~~~~~g~~t~~~~AL~~a~~~~f~   94 (193)
T d1v7pc_          21 KNFLEKFVQGLDI---GPTKTQVGLIQYANNPRVVFNLNTY---KTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYS   94 (193)
T ss_dssp             HHHHHHHHHTSCB---STTSEEEEEEEESSSEEEEECTTTC---SSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCC---CCCCCEEEEEEEECCEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             9999999997255---8876079999852011355046630---367899999874443225764268899888874146


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCC----CCHHHHHHHHHCCC---
Q ss_conf             66654444566777506999996066888854089999999987968999994378874----31178999860689---
Q gi|254780388|r  353 SNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQ----QEKARYFLSNCASP---  425 (458)
Q Consensus       353 ~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K~~gI~IytI~f~~~~~~----~~~~~~~lk~CAs~---  425 (458)
                      ..+.      ..++..|++|++|||..+ ........++.+|+.||+||+||++...+.    .......|+.+||+   
T Consensus        95 ~~~~------~R~~~~kvvVllTDG~s~-d~~~~~~~~~~~~~~gv~v~~Igvg~~~~~~~~~~~~~~~~L~~Ias~p~~  167 (193)
T d1v7pc_          95 AASG------GRRSATKVMVVVTDGESH-DGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTE  167 (193)
T ss_dssp             GGGT------CCTTSEEEEEEEESSCCS-CGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHH
T ss_pred             CCCC------CCCCCCEEEEEEECCCCC-CCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             1238------988873589999568767-873689999999868989999996775444444441259999998669871


Q ss_pred             CCEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             837882998999999999987587
Q gi|254780388|r  426 NSFFEANSTHELNKIFRDRIGNEI  449 (458)
Q Consensus       426 ~~yy~a~~~~eL~~aF~~~i~~~~  449 (458)
                      .++|.+.+-.+|.+.+.+ +.++|
T Consensus       168 ~~~f~v~d~~~L~~i~~~-l~~~I  190 (193)
T d1v7pc_         168 RYFFNVSDEAALLEKAGT-LGEQI  190 (193)
T ss_dssp             HHEEEESSSGGGHHHHHH-HHHHH
T ss_pred             CEEEECCCHHHHHHHHHH-HHHHC
T ss_conf             018981899999999999-98651


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha2-beta1
species: Human (Homo sapiens) [TaxId: 9606]