HHSEARCH alignment of GI: 254780388 and SCOP domain: d1yvra2

Alignment
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=97.81  E-value=0.00038  Score=41.97  Aligned_cols=91  Identities=15%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH---HCCCEEEEEEEC
Q ss_conf             25677777645889999986236666544445667775069999960668888540899999999---879689999943
Q gi|254780388|r  330 DENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAK---SQGIRIMTIAFS  406 (458)
Q Consensus       330 ~~~~~g~T~~~~gl~~g~~~Ls~~~~~~~~~~~~~~~~~K~iil~TDG~n~~~~~~~~~~C~~~K---~~gI~IytI~f~  406 (458)
                      ...+.|+|++..+|.|+....               ...+++|++|||+++.+......+-+..+   ..++++++|++.
T Consensus        75 ~~~~~ggT~i~~al~~a~~~~---------------~~~~~ivllTDg~~~~g~~~~~~~l~~y~~~~~~~~~~~~i~l~  139 (174)
T d1yvra2          75 SDITMGSTDCALPMLWAQKTN---------------TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMT  139 (174)
T ss_dssp             TTCCCSCCCTTHHHHHHHHTT---------------CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred             HCCCCCCCCHHHHHHHHHHHH---------------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             325666630889999998630---------------15787999967875678879899999999870899489999876


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCEE---EECCHHHHHHHHH
Q ss_conf             78874311789998606898378---8299899999999
Q gi|254780388|r  407 VNKTQQEKARYFLSNCASPNSFF---EANSTHELNKIFR  442 (458)
Q Consensus       407 ~~~~~~~~~~~~lk~CAs~~~yy---~a~~~~eL~~aF~  442 (458)
                      ..+....       .--.++...   +....-.+.++|.
T Consensus       140 ~~g~~~~-------~~~~~~~~~i~Gfs~~~~~~i~af~  171 (174)
T d1yvra2         140 SNGFSIA-------DPDDRGMLDICGFDSGALDVIRNFT  171 (174)
T ss_dssp             SSSEESS-------CTTCTTEEEEETTCTTHHHHHHHHH
T ss_pred             CCCCCCC-------CCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf             8987656-------8899996788457888999999986


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]