RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780388|ref|YP_003064801.1| hypothetical protein
CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62]
         (458 letters)



>gnl|CDD|128622 smart00327, VWA, von Willebrand factor (vWF) type A domain.  VWA
           domains in extracellular eukaryotic proteins mediate
           adhesion via metal ion-dependent adhesion sites (MIDAS).
           Intracellular VWA domains and homologues in prokaryotes
           have recently been identified. The proposed VWA domains
           in integrin beta subunits have recently been
           substantiated using sequence-based methods.
          Length = 177

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFND--RVISDPSFSWGVHKLIRTIVKTFAIDENEM 334
           A   V++ ++++D   D  R+G   F+D   V+   + S     L+  +    ++     
Sbjct: 22  AKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLNDSRSKDALLEAL---ASLSYKLG 78

Query: 335 GSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAK 394
           G T +  A+Q A + + S          +   A K ++L+TDGE+  D  + +    + K
Sbjct: 79  GGTNLGAALQYALENLFSK------SAGSRRGAPKVLILITDGESN-DGGDLLKAAKELK 131

Query: 395 SQGIRIMTIAFS 406
             G+++  +   
Sbjct: 132 RSGVKVFVVGVG 143


>gnl|CDD|184242 PRK13685, PRK13685, hypothetical protein; Provisional.
          Length = 326

 Score = 34.7 bits (80), Expect = 0.052
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 29/107 (27%)

Query: 371 IVLLTDGENT----QDNEEG-IAICNKAKSQGIRIMTIAF-----SV------------N 408
           IVL++DG+ T     DN  G       AK QG+ I TI+F     SV            +
Sbjct: 197 IVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDD 256

Query: 409 KTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIFERVIR 455
           ++ ++ A+       S   F+ A S  EL  ++   +  +I    I+
Sbjct: 257 ESLKKIAQL------SGGEFYTAASLEELRAVY-ATLQQQIGYETIK 296


>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit
           alpha; Provisional.
          Length = 339

 Score = 30.1 bits (68), Expect = 1.2
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGS 336
           ALA+ +   K +D +   +++ A        +  + SWGV ++++  +     D  E+  
Sbjct: 60  ALAARLSKAKDVDELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAALDAE--DVEEIRD 117

Query: 337 TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378
            A+ +A + A        E++V R  N L  K    LL DG+
Sbjct: 118 IALREAERIA--------EEDVAR--NKLIGKHGAKLLEDGD 149


>gnl|CDD|149078 pfam07811, TadE, TadE-like protein.  The members of this family
          are similar to a region of the protein product of the
          bacterial tadE locus. In various bacterial species, the
          tad locus is closely linked to flp-like genes, which
          encode proteins required for the production of pili
          involved in adherence to surfaces. It is thought that
          the tad loci encode proteins that act to assemble or
          export an Flp pilus in various bacteria. All tad loci
          but TadA have putative transmembrane regions, and in
          fact the region in question is this family has a high
          proportion of hydrophobic amino acid residues.
          Length = 43

 Score = 29.7 bits (68), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 26 TALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTA 60
           AL++PV+L +   +V++ R  Y    L+ AA+ A
Sbjct: 7  FALVLPVLLLLLFGIVELGRLFYARQVLQNAAREA 41


>gnl|CDD|183821 PRK12899, secA, preprotein translocase subunit SecA; Reviewed.
          Length = 970

 Score = 29.8 bits (67), Expect = 1.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 204 FGQPADRTVKSYSSQNGKVGIRDEKLSP 231
           FG   +R +K +     KV   DEK S 
Sbjct: 9   FGSSQERILKRFQKLVEKVNAYDEKFSS 36


>gnl|CDD|129946 TIGR00868, hCaCC, calcium-activated chloride channel protein 1.
           distributions. found a row in 1A13.INFO that was not
           parsed out.
          Length = 863

 Score = 28.7 bits (64), Expect = 3.5
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 15/71 (21%)

Query: 335 GSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAK 394
           G T+I   ++ A+  I  S     ++  +  E    IVLLTDGE   DN   I+ C +  
Sbjct: 381 GGTSICSGLKAAFQVIKKS-----YQSTDGSE----IVLLTDGE---DN--TISSCFEEV 426

Query: 395 SQ-GIRIMTIA 404
            Q G  I TIA
Sbjct: 427 KQSGAIIHTIA 437


>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase; Provisional.
          Length = 458

 Score = 28.5 bits (64), Expect = 3.5
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 47  SYYEHALKQAAQTAIITASVP----LIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNL 102
           S+    +  + + A++T   P    + + +EE     KN F +  Q   + L+ N +N +
Sbjct: 175 SFQLMTMDVSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKY--QSENDLLVLNKDNEI 232

Query: 103 KKNFTDREVRDIVRDTAVEMNPRKSAY 129
                  E +  V   + +    + AY
Sbjct: 233 TNGMEK-EAKGDVVKFSRKEKVYEGAY 258


>gnl|CDD|162252 TIGR01210, TIGR01210, conserved hypothetical protein TIGR01210.
           This family of exclusively archaeal proteins has no
           characterized close homologs. Several rounds of
           PSI-BLAST with a stringent cutoff of 1e-8 shows apparent
           similarity of the central region of this family to the
           central regions of the oxygen-independent
           coproporphyrinogen III dehydrogenase HemN and to other
           enzymes.
          Length = 313

 Score = 27.1 bits (60), Expect = 9.3
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 276 DALASVIRSIKKIDNVNDTVRMGAT---------FFNDRVISDPSFSWGVHKLIRTIVKT 326
           +A+A +I SI+K   V DTV +  T         F  +R +  P + W V ++++   K 
Sbjct: 186 EAIADMISSIRKCIPVTDTVSINPTNVQKGTLVEFLWNRGLYRPPWLWSVAEVLKEAKKI 245

Query: 327 FAI 329
            A 
Sbjct: 246 GAE 248


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0802    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,281,338
Number of extensions: 460531
Number of successful extensions: 943
Number of sequences better than 10.0: 1
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 15
Length of query: 458
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 361
Effective length of database: 3,898,497
Effective search space: 1407357417
Effective search space used: 1407357417
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)