RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780388|ref|YP_003064801.1| hypothetical protein
CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
>2odp_A Complement C2; C3/C5 convertase, complement serine protease,
human complement system, glycoprotein, SP, VWFA,
hydrolase; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A*
2i6q_A* 2i6s_A* (A:1-224)
Length = 224
Score = 55.4 bits (132), Expect = 2e-08
Identities = 25/183 (13%), Positives = 62/183 (33%), Gaps = 15/183 (8%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRV---ISDPSFSWGVHKLIRTIVKTFAI 329
+ +++ + ++ +I + V + F +S + + + + ++
Sbjct: 29 IFKESASLMVD---RIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANY 85
Query: 330 DENEMGS-TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQD------ 382
++E G+ T A+ + Y + + E + I+LLTDG++
Sbjct: 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTA 145
Query: 383 --NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKI 440
+ I N+ ++ + I I + S F T L+++
Sbjct: 146 VDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQV 205
Query: 441 FRD 443
F
Sbjct: 206 FEH 208
>1jey_B KU80; double-strand DNA break repair, non-homologous
END-joining, protein/nucleic acid complex, alpha/beta
domain, beta barrel; HET: DNA; 2.50A {Homo sapiens}
(B:1-236,B:463-505)
Length = 279
Score = 54.2 bits (129), Expect = 3e-08
Identities = 23/180 (12%), Positives = 46/180 (25%), Gaps = 21/180 (11%)
Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENE--- 333
A + +++ + + F +P ++ I D +
Sbjct: 34 AKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLED 93
Query: 334 --------MGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEE 385
DA+ + D I H K++I + TD + +
Sbjct: 94 IESKIQPGSQQADFLDALIVSMDVIQ-------HETIGKKFEKRHIEIFTDLSSRFSKSQ 146
Query: 386 GIAICNKAKSQGIRIMTIAF-SVNKTQQEKARYFLSNCASPN--SFFEANSTHELNKIFR 442
I + K I + S+ K R + SF T + +
Sbjct: 147 LDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLE 206
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus,
CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A
{Streptococcus pneumoniae}
(A:221-279,A:318-447,A:506-585)
Length = 269
Score = 49.1 bits (116), Expect = 1e-06
Identities = 26/197 (13%), Positives = 44/197 (22%), Gaps = 25/197 (12%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
+A S+I I R+ + + I +K E
Sbjct: 30 RAGEATRSLIDKITSDSEN----RVALVTYASTIDYSYLKLTNDKNDIVE-LKNKVPTEA 84
Query: 333 EM----------GSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQD 382
E G+T A+ A E+ + ++K I +TDG T
Sbjct: 85 EDHDGNRLMYQFGATFTQKALMKAD---------EILTQQARQNSQKVIFHITDGVPTMS 135
Query: 383 NEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHEL-NKIF 441
A S ++ F++ S N
Sbjct: 136 YPINFNHATFAPSYQNQLNAFFSKSPNKDGILLSDFITQATSGEHTIVRGDGQSNSNTAK 195
Query: 442 RDRIGNEIFERVIRITK 458
G+
Sbjct: 196 ITNHGDPTRWYYNGNIA 212
Score = 46.4 bits (109), Expect = 8e-06
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 375 TDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVN---KTQQEKARYFLSNCASPNSFFEA 431
T + G + T+ +N T + A F+ + +S +
Sbjct: 193 TAKITNHGDPTRWYYNGNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENY-- 250
Query: 432 NSTHELNKIFRDRIGNEI 449
+ + KI +
Sbjct: 251 TNVTDTTKILEQ-LNRYF 267
>3hrz_D Complement factor B; serine protease, glycosilated,
multi-domain, complement system, convertase, complement
alternate pathway, complement pathway; HET: NAG P6G;
2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457)
Length = 259
Score = 48.8 bits (115), Expect = 1e-06
Identities = 23/190 (12%), Positives = 51/190 (26%), Gaps = 21/190 (11%)
Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK----LIRTIVKTFAIDEN 332
A ++ I+K+ + R G + S + + + + D
Sbjct: 66 AKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHK 125
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICN- 391
T A+Q Y + ++ + I+L+TDG + + I
Sbjct: 126 LKSGTNTKKALQAVYSMMSWPDDVPPEGWNR---TRHVIILMTDGLHNMGGDPITVIDEI 182
Query: 392 -----------KAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKI 440
+ + + Q S + F+ L +
Sbjct: 183 RDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVN-INALASKKDNEQHVFKVKDMENLEDV 241
Query: 441 FRDRIGNEIF 450
F ++ +E
Sbjct: 242 F-YQMIDESQ 250
>1jey_A KU70; double-strand DNA break repair, non-homologous
END-joining, protein/nucleic acid complex, alpha/beta
domain, beta barrel; HET: DNA; 2.50A {Homo sapiens}
(A:1-252)
Length = 252
Score = 46.6 bits (109), Expect = 7e-06
Identities = 13/204 (6%), Positives = 43/204 (21%), Gaps = 39/204 (19%)
Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGV-------------HKLIRTI 323
++ + +D + F+ + + +
Sbjct: 63 SIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQF 122
Query: 324 VKTFAID-----ENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378
++++ + + + K I+L T+ +
Sbjct: 123 KGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKM---------SHKRIMLFTNED 173
Query: 379 NT-----QDNEEGIAICNKAKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEA 431
N + GI + + R +S +
Sbjct: 174 NPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHF 233
Query: 432 NSTHELNKIFRDRIGNEIFERVIR 455
+ +L + ++ + R
Sbjct: 234 EESSKLEDLL-----RKVRAKETR 252
>3k6s_A Integrin alpha-X; hetero dimer, cell receptor, adhesion
molecule, calcium, cell adhesion, disulfide bond,
glycoprotein, magnesium, membrane; HET: NAG MAN; 3.50A
{Homo sapiens} PDB: 3k71_A* 3k72_A* (A:125-315)
Length = 191
Score = 45.0 bits (105), Expect = 2e-05
Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 17/174 (9%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
+ + + +VI + + + F+++ + F++ + + A
Sbjct: 26 TMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTH--FTFEEFRRSSNPLSLLASVHQ 78
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
G T A+Q + +A K ++++TDG+ D+ + +
Sbjct: 79 LQGFTYTATAIQNVVHRLFH------ASYGARRDAAKILIVITDGKKEGDSLDYKDVIPM 132
Query: 393 AKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS---PNSFFEANSTHELNKIFRD 443
A + GI I + + L++ AS F+ L I
Sbjct: 133 ADAAGIIRYAIGVGLAFQ-NRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQ 185
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain,
A domain, hydrolase; 1.80A {Homo sapiens} (A:)
Length = 223
Score = 42.6 bits (99), Expect = 9e-05
Identities = 24/206 (11%), Positives = 55/206 (26%), Gaps = 26/206 (12%)
Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFS----WGV 316
S S+ + +L ++I K+ + R G + S
Sbjct: 25 SDSIGA--SNFTGAKKSLVNLIE---KVASYGVKPRYGLVTYATYPKIWVKVSEADSSNA 79
Query: 317 HKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTD 376
+ + + + D T A+Q Y + ++ + + I+L+TD
Sbjct: 80 DWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDV---PPEGWNRTRHVIILMTD 136
Query: 377 GENTQDNE------------EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS 424
G + + + + + Q S +
Sbjct: 137 GLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVN-INALASKKDN 195
Query: 425 PNSFFEANSTHELNKIFRDRIGNEIF 450
F+ L +F ++ +E
Sbjct: 196 EQHVFKVKDMENLEDVF-YQMIDESQ 220
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa;
heat repeat, VON willebrand factor A, rossmann fold,
midas motif', RNA binding protein; 1.95A {Xenopus
laevis} (A:365-538)
Length = 174
Score = 41.0 bits (95), Expect = 3e-04
Identities = 19/153 (12%), Positives = 38/153 (24%), Gaps = 32/153 (20%)
Query: 259 VDSS---SLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWG 315
+D S + R + + A A + F+D ++ P
Sbjct: 11 IDVSASMNQRVLGSILNASVVAAAMCM------LVARTEKDSHMVAFSDEMLPCPITVNM 64
Query: 316 VHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLT 375
+ + + + MGST M A A ++ T
Sbjct: 65 LLHEVVE-----KMSDITMGSTDCALPMLWAQK---------------TNTAADIFIVFT 104
Query: 376 DGENT---QDNEEGIAICNKAKSQGIRIMTIAF 405
D E + + +++ A
Sbjct: 105 DCETNVEDVHPATALKQYREKMGIPAKLIVCAM 137
>1dfa_A PI-SCEI endonuclease; intein, homing endonuclease,
hydrolase; 2.00A {Saccharomyces cerevisiae} (A:194-405)
Length = 212
Score = 28.6 bits (63), Expect = 1.8
Identities = 5/59 (8%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 122 MNPRKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQ 180
+ + + + + + + L RS+G+ + A+ + + + + +
Sbjct: 136 VTDEHG-IKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAIYMS 193
>2z1m_A GDP-D-mannose dehydratase; short-chain
dehydrogenase/reductase, lyase, structural genomics,
NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB:
2z95_A* (A:1-178)
Length = 178
Score = 26.8 bits (57), Expect = 6.4
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 155 SWLIQTKAEAETVSRSYHKEHGVSIQWVI 183
S K ++ +Y + + + I
Sbjct: 149 SPYAVAKLFGHWITVNYREAYNMFACSGI 177
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain
dehydrogenase/reductase, rossmann fold, lyase; HET: NDP
GDP; 2.15A {Pseudomonas aeruginosa} (A:1-189)
Length = 189
Score = 26.5 bits (56), Expect = 6.6
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 155 SWLIQTKAEAETVSRSYHKEHGVSIQWV 182
S K ++ +Y + G+
Sbjct: 160 SPYGVAKLYGHWITVNYRESFGLHASSG 187
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} (A:1-207)
Length = 207
Score = 26.5 bits (56), Expect = 7.2
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 155 SWLIQTKAEAETVSRSYHKEHGVSIQWV 182
S K A + ++ + + +
Sbjct: 178 SPYGAAKLYAYWIVVNFREAYNLFAVNG 205
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.133 0.378
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,306,083
Number of extensions: 144715
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 19
Length of query: 458
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 367
Effective length of database: 1,879,794
Effective search space: 689884398
Effective search space used: 689884398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)