RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780388|ref|YP_003064801.1| hypothetical protein
CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62]
         (458 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 75/476 (15%), Positives = 113/476 (23%), Gaps = 239/476 (50%)

Query: 42  DVVRWSYYEHALKQAAQTAIITASVPLIQS--LEEVSSRAKNSFT-FPKQ-KIEEYLIRN 97
           ++++ +Y        A+            S     V          F  Q   ++Y    
Sbjct: 121 ELIK-NYI------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY---- 169

Query: 98  FENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL------LLNPLS------ 145
           FE          E+RD+   T          Y V++    DL       L+ L       
Sbjct: 170 FE----------ELRDLY-QT----------YHVLVG---DLIKFSAETLSELIRTTLDA 205

Query: 146 --LFLRSMGIKSWLIQTKAEAE---------TVS-------------------------- 168
             +F + + I  WL                  +S                          
Sbjct: 206 EKVFTQGLNILEWL--ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263

Query: 169 RSY------HKEHGV--------SIQW---------VID--F---SRSMLDYQR------ 194
           RSY      H + G+        +  W          I   F    R    Y        
Sbjct: 264 RSYLKGATGHSQ-GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322

Query: 195 ---DS----EGQPLNCFGQPADRTVKSY--SSQNGKVGIRD---EKLSPYMVSCNKSLYY 242
              DS    EG P             S   S       I +   E++  Y+   N  L  
Sbjct: 323 ILEDSLENNEGVP-------------SPMLS-------ISNLTQEQVQDYVNKTNSHL-- 360

Query: 243 MLYPGPLDP----SL--SEEHFVDS---SSLRHVIKKKHLVRDALASVIRSIKKIDNVND 293
                P       SL    ++ V S    SL             L   +R  K    + D
Sbjct: 361 -----PAGKQVEISLVNGAKNLVVSGPPQSLYG-----------LNLTLRKAKAPSGL-D 403

Query: 294 TVRMGATFFNDR---------VISDPSF-SWGVHKLIRT---IVKTFAIDENEMGSTAIN 340
             R+    F++R          ++ P F S   H L+     I K    +     +    
Sbjct: 404 QSRIP---FSERKLKFSNRFLPVASP-FHS---HLLVPASDLINKDLVKNNVSFNA---K 453

Query: 341 DAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGI------AIC 390
           D     YDT                          DG + +     I       I 
Sbjct: 454 DIQIPVYDT-------------------------FDGSDLRVLSGSISERIVDCII 484



 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 52/329 (15%), Positives = 96/329 (29%), Gaps = 140/329 (42%)

Query: 14  LIKSCTGHF-FIITALLMPVMLGVGGMLVDVVRW-SYYEHALK-------------QAAQ 58
            +K  TGH   ++TA+ +           D   W S++    K             +A  
Sbjct: 266 YLKGATGHSQGLVTAVAIAE--------TD--SWESFFVSVRKAITVLFFIGVRCYEAYP 315

Query: 59  TAIITASVPLIQSLEE----------VS--SRAK--------NSFTFPK-QKIEEYLIRN 97
              +  S+ L  SLE           +S  ++ +        NS   P  +++E  L+  
Sbjct: 316 NTSLPPSI-LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLV-- 371

Query: 98  FENNLKKNFT-----------DREVRDIVRDTAVEMN--P---RKSAYQVVLSSRY---- 137
              N  KN             +  +R     + ++ +  P   RK    +  S+R+    
Sbjct: 372 ---NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK----LKFSNRFLPVA 424

Query: 138 -----DLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYH-------KEHGVSI------ 179
                 LL+    L  + +   +     K     V   Y        +    SI      
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLSGSISERIVD 481

Query: 180 -------QW--VIDFSRS-MLDYQRDSEGQPLNCFGQPADRTVKSYSSQN--GKVGIRDE 227
                  +W     F  + +LD            FG      +   + +N  G  G+R  
Sbjct: 482 CIIRLPVKWETTTQFKATHILD------------FGPGGASGLGVLTHRNKDGT-GVR-- 526

Query: 228 KLSPYMVSCNKSLYYMLYPGPLDPSLSEE 256
                          ++  G LD +  ++
Sbjct: 527 ---------------VIVAGTLDINPDDD 540



 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 53/361 (14%), Positives = 101/361 (27%), Gaps = 143/361 (39%)

Query: 169 RSYHKEHGVSIQWVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEK 228
           R     HG S++ V+    +            L       ++  K            DE 
Sbjct: 7   RPLTLSHG-SLEHVLLVPTASF-----FIASQLQ------EQFNKILPEPTEGFAADDEP 54

Query: 229 LSPYMVS-CNKSLYYMLY------PGPLDPSLS------EEHFVDSSSLRHVI------- 268
            +P       K L Y+         G  D  L+      E  +++ + + H +       
Sbjct: 55  TTP--AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQE 111

Query: 269 ------KKKHLVRDALASVIRSIKKIDNV----------NDTVRMGATF---------FN 303
                 K K L+++ + + I + +  D                ++ A F         F 
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171

Query: 304 D-RVISD--PSFSWGVHKLIRTIVKTFAIDENEMGSTAIN---------DAMQ------- 344
           + R +          V  LI+   +T     +E+  T ++         + ++       
Sbjct: 172 ELRDLYQTYHVL---VGDLIKFSAETL----SELIRTTLDAEKVFTQGLNILEWLENPSN 224

Query: 345 ---TAYDTIISSNEDEV-----------HRMKNNLEAKKYIVL-----LTDGENTQDNEE 385
                Y  ++S     +           H          Y+V       T GE  +   +
Sbjct: 225 TPDKDY--LLSI---PISCPLIGVIQLAH----------YVVTAKLLGFTPGE-LRSYLK 268

Query: 386 GIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445
           G        SQG+ +  +A +                 S  SFF  +    +  +F   I
Sbjct: 269 GAT----GHSQGL-VTAVAIAE--------------TDSWESFFV-SVRKAITVLF--FI 306

Query: 446 G 446
           G
Sbjct: 307 G 307


>2odp_A Complement C2; C3/C5 convertase, complement serine protease, human
           complement system, glycoprotein, SP, VWFA, hydrolase;
           HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A*
           2i6s_A*
          Length = 509

 Score = 58.0 bits (139), Expect = 4e-09
 Identities = 27/188 (14%), Positives = 54/188 (28%), Gaps = 12/188 (6%)

Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVIS----DPSFSWGVHKLIRTIVKTFAIDEN 332
              S    + +I +    V +    F              S  + ++I ++      D  
Sbjct: 30  FKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHE 89

Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGEN--------TQDNE 384
               T    A+ + Y  + +             E +  I+LLTDG++          D+ 
Sbjct: 90  NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHI 149

Query: 385 EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDR 444
             I   N+ ++  + I  I          +     S        F    T  L+++F   
Sbjct: 150 REILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHM 209

Query: 445 IGNEIFER 452
           +       
Sbjct: 210 LDVSKLTD 217


>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
           complement system, convertase, complement alternate
           pathway, complement pathway; HET: NAG P6G; 2.20A {Homo
           sapiens} PDB: 3hs0_D* 2ok5_A*
          Length = 741

 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 24/198 (12%), Positives = 52/198 (26%), Gaps = 24/198 (12%)

Query: 275 RDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK----LIRTIVKTFAID 330
             A   ++  I+K+ +     R G   +          S         + + + +    D
Sbjct: 262 TGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYED 321

Query: 331 ENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAIC 390
                 T    A+Q  Y  +   ++      +     +  I+L+TDG +    +    I 
Sbjct: 322 HKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVID 378

Query: 391 ------------NKAKSQGIRIMTIAFS--VNKTQQEKARYFLSNCASPNSFFEANSTHE 436
                          +   + +        VN+          S   +    F+      
Sbjct: 379 EIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINA---LASKKDNEQHVFKVKDMEN 435

Query: 437 LNKIFRDRIGNEIFERVI 454
           L  +F   I       + 
Sbjct: 436 LEDVFYQMIDESQSLSLC 453


>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
           {Homo sapiens} SCOP: c.62.1.1
          Length = 198

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 16/181 (8%)

Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
            + + + +VI   +       + +     F+++  +  +F     +     +   A    
Sbjct: 29  TMMNFVRAVISQFQ-----RPSTQFSLMQFSNKFQTHFTFEE--FRRSSNPLSLLASVHQ 81

Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
             G T    A+Q     +  ++           +A K ++++TDG+   D+ +   +   
Sbjct: 82  LQGFTYTATAIQNVVHRLFHASYG------ARRDAAKILIVITDGKKEGDSLDYKDVIPM 135

Query: 393 AKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIF 450
           A + GI    I    +       K    +++  S    F+      L  I  +++  +IF
Sbjct: 136 ADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQ-NQLKEKIF 194

Query: 451 E 451
            
Sbjct: 195 A 195


>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
           c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1
           1bho_1 1idn_1
          Length = 194

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 25/180 (13%), Positives = 65/180 (36%), Gaps = 16/180 (8%)

Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
            +++ +++V+  +KK   +   ++    F       +   +     L++ I         
Sbjct: 25  RMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPI-------TQ 77

Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
            +G T     ++     + +              A K +V++TDGE   D      +  +
Sbjct: 78  LLGRTHTATGIRKVVRELFNI------TNGARKNAFKILVVITDGEKFGDPLGYEDVIPE 131

Query: 393 AKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIF 450
           A  +G+    I    +    +  +    +++    +  F+ N+   L  I  +++  +IF
Sbjct: 132 ADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQ-NQLREKIF 190


>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
           1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
           1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
           1u0o_C
          Length = 202

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 20/198 (10%), Positives = 58/198 (29%), Gaps = 25/198 (12%)

Query: 259 VDSS-SLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVH 317
           +D S  L     +  +++  +  ++   +++      VR+    ++D   +         
Sbjct: 20  LDGSSRLSE--AEFEVLKAFVVDMM---ERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKR 74

Query: 318 KLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDG 377
                        + +   + +    +    T+            +       ++L+   
Sbjct: 75  PSELRR----IASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASR----IALLLMASQ 126

Query: 378 ENTQDNEEGIAICNKAKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTH 435
           E  + +   +      K + + ++ +      N  Q       +   A  N  F  +S  
Sbjct: 127 EPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRL----IEKQAPENKAFVLSSVD 182

Query: 436 ELNKIFRDRIGNEIFERV 453
           EL +       +EI   +
Sbjct: 183 ELEQQR-----DEIVSYL 195


>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo
           sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A
           1mhp_A
          Length = 213

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 22/199 (11%)

Query: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK 318
           +D S+    I     V   L  ++   K++D      ++G   + + V  + + +     
Sbjct: 14  LDGSN---SIYPWDSVTAFLNDLL---KRMDIGPKQTQVGIVQYGENVTHEFNLNKYSST 67

Query: 319 LIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378
                V   A    + G      A+ T      +  E    R       KK +V++TDGE
Sbjct: 68  ---EEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARR----GVKKVMVIVTDGE 120

Query: 379 NTQDNEEGIAICNKAKSQGIRIMTI----AFSVNKTQQEKARYFLSNCASPNS---FFEA 431
           +  DN     +    + + I+  +I    +++      EK    + + AS  +   FF  
Sbjct: 121 S-HDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNV 179

Query: 432 NSTHELNKIFRDRIGNEIF 450
           +    L  I    +G  IF
Sbjct: 180 SDELALVTIV-KTLGERIF 197


>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A
           domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
          Length = 223

 Score = 47.6 bits (112), Expect = 6e-06
 Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 20/185 (10%)

Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFA----IDEN 332
           A  S++  I+K+ +     R G   +          S         + K        D  
Sbjct: 36  AKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHK 95

Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT------------ 380
               T    A+Q  Y  +   ++      +     +  I+L+TDG +             
Sbjct: 96  LKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEI 152

Query: 381 QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKI 440
           +D           +   + +           Q       S   +    F+      L  +
Sbjct: 153 RDLLYIGKDRKNPREDYLDVYVFGVGPL-VNQVNINALASKKDNEQHVFKVKDMENLEDV 211

Query: 441 FRDRI 445
           F   I
Sbjct: 212 FYQMI 216


>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
           b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
          Length = 497

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 23/200 (11%)

Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVIS----DPSFSWGVHKLIRTIVKTFA 328
             +  L ++I  +          R G   +            + S     + + + +   
Sbjct: 21  GAKKVLVNLIEKVASYG---VKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY 77

Query: 329 IDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIA 388
            D      T    A+Q  Y  +   ++      +     +  I+L+TDG +    +    
Sbjct: 78  EDHKLKSGTNTKKALQAVYSMMSWPDD---VPPEGWNRTRHVIILMTDGLHNMGGDPITV 134

Query: 389 I------------CNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHE 436
           I                +   + +           Q       S   +     +      
Sbjct: 135 IDEIRDLLYIGKDRKNPREDYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDMEC 193

Query: 437 LNKIFRDRIGNEIFERVIRI 456
           L  +F   I       +  +
Sbjct: 194 LEDVFYQMIDESQSLSLCGM 213


>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
           {Toxoplasma gondii}
          Length = 178

 Score = 44.4 bits (104), Expect = 5e-05
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 10/133 (7%)

Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
           LV+  L + +     +    + V      ++  V              +           
Sbjct: 37  LVKQFLHTFL---MVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPY 93

Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
           + GST  +D ++     + +                K ++ +TDGE+  D     A   +
Sbjct: 94  KKGSTNTSDGLKACKQILFT------GSRPGREHVPKLVIGMTDGESDSDFRTVRAA-KE 146

Query: 393 AKSQGIRIMTIAF 405
            +  G  +  +A 
Sbjct: 147 IRELGGIVTVLAV 159


>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON
           willebrand factor A domain, beta- sheet, RNA binding
           protein; 1.89A {Deinococcus radiodurans}
          Length = 535

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 6/84 (7%), Positives = 16/84 (19%), Gaps = 18/84 (21%)

Query: 328 AIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDN---E 384
                  G T     +                            V+ TD E         
Sbjct: 432 KAQSVSFGGTDCAQPIL---------------WAAQERLDVDTFVVYTDNETWAGQVHPT 476

Query: 385 EGIAICNKAKSQGIRIMTIAFSVN 408
             +    +   +  +++ +  +  
Sbjct: 477 VALDQYAQKMGRAPKLIVVGLTAT 500


>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
           biosynthesis, photosynthesis; 7.50A {Rhodobacter
           capsulatus}
          Length = 189

 Score = 37.4 bits (86), Expect = 0.008
 Identities = 16/154 (10%), Positives = 36/154 (23%), Gaps = 28/154 (18%)

Query: 269 KKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFA 328
            +    + A+  ++              +    F                  +  ++   
Sbjct: 21  ARLSEAKGAVELLLG-----RAYAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLP 75

Query: 329 IDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT-------- 380
                 G T +   M+ A  T   +                 I LLTDG           
Sbjct: 76  GG----GGTPLASGMEMAMVTAKQARSRG---------MTPTIALLTDGRGNIALDGTAN 122

Query: 381 --QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQ 412
                E+   +    ++ G+  + I  ++     
Sbjct: 123 RELAGEQATKVARAIRASGMPAVIIDTAMRPNPA 156


>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Escherichia
           coli} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I
           1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A*
           1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A*
           2o7n_A* 3f78_A* ...
          Length = 179

 Score = 36.5 bits (83), Expect = 0.012
 Identities = 21/179 (11%), Positives = 57/179 (31%), Gaps = 23/179 (12%)

Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
            + D +  V++        N + +  A  F+    ++  FS  V +  +         ++
Sbjct: 22  KILDFMKDVMKKCS-----NTSYQFAAVQFSTSYKTEFDFSDYVKR--KDPDALLKHVKH 74

Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
            +  T    A+      +               +A K ++++TDGE T            
Sbjct: 75  MLLLTNTFGAINYVATEVFREELG------ARPDATKVLIIITDGEATDSGNI------- 121

Query: 393 AKSQGIRIMTIAFS--VNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEI 449
             ++ I    I         + ++  +  ++  +       ++  +L  +    +  +I
Sbjct: 122 DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKLKDLC-TELQKKI 179


>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell
           adhesion, cleavage on PAIR of basic residues, disease
           mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
          Length = 184

 Score = 36.0 bits (82), Expect = 0.019
 Identities = 17/173 (9%), Positives = 49/173 (28%), Gaps = 23/173 (13%)

Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
             ++ +  VI+ +  +   +  V +    +   V    S +     +++ + +      N
Sbjct: 22  RSKEFMEEVIQRMD-VGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRVREIRYQGGN 80

Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
                    A++   D              +  +A   + ++T    + +      I   
Sbjct: 81  RT---NTGLALRYLSDHSFLV------SQGDREQAPNLVYMVTGNPASDE------IKRL 125

Query: 393 AKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445
                +  + +  + N  +       L     PN+         L +   D +
Sbjct: 126 PGDIQVVPIGVGPNANVQE-------LERIGWPNAPILIQDFETLPREAPDLV 171


>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
           protein/nucleic acid complex, alpha/beta domain, beta
           barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
           c.62.1.4 PDB: 1jeq_B*
          Length = 565

 Score = 33.9 bits (77), Expect = 0.078
 Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 10/97 (10%)

Query: 318 KLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDG 377
            L+  I         +       DA+  + D I        H        K++I + TD 
Sbjct: 89  DLLEDIESKIQPGSQQ---ADFLDALIVSMDVIQ-------HETIGKKFEKRHIEIFTDL 138

Query: 378 ENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEK 414
            +     +   I +  K   I +          +   
Sbjct: 139 SSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGS 175


>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
           channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
          Length = 674

 Score = 32.8 bits (74), Expect = 0.18
 Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 15/107 (14%)

Query: 40  LVDVVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYL 94
           +V+ +RW      +++  +  I        +  ++V ++     ++         +E   
Sbjct: 5   VVNDLRWDLSAQQIEERTRELIEQTK----RVYDQVGTQEFEDVSYESTLKALADVEVTY 60

Query: 95  --IRNFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139
              RN  +  +     +++R      + E + + S + V +S R D+
Sbjct: 61  TVQRNILDFPQHVSPSKDIRTA----STEADKKLSEFDVEMSMREDV 103


>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation,
           psychrophilic, cold adaptation, temperature, glycosyl
           hydrolase, family 8; HET: XYP XYS; 1.2A
           {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB:
           1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
          Length = 405

 Score = 32.0 bits (72), Expect = 0.29
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 15/108 (13%)

Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRM---KNNLEAKKYIVLLTDGENTQDNEEGIAI 389
           EMG T I   + + +D +   N  +       +N +    YI  +   E      EG   
Sbjct: 23  EMGKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEG--- 79

Query: 390 CNKAKSQGIRIMTIAFSVNKTQQEKA--RYFLSNCASPNSFFEANSTH 435
               +S G   MT A  +NK ++     R+  +   +P++  +A    
Sbjct: 80  ----QSWG---MTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQG 120


>2jow_A Protein PRGI; needle protein, transport protein; NMR {Salmonella
           typhimurium}
          Length = 83

 Score = 31.4 bits (71), Expect = 0.38
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 46  WSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTFPK--QKIEEY-LIRNFENNL 102
           WS Y   +     T +      + ++L++++++  +         K+ EY L RN ++N 
Sbjct: 5   WSGYLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSNT 64

Query: 103 KKNFTD 108
            K F D
Sbjct: 65  VKVFKD 70


>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
           repeat, VON willebrand factor A, rossmann fold, midas
           motif', RNA binding protein; 1.95A {Xenopus laevis}
           SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
          Length = 538

 Score = 31.1 bits (70), Expect = 0.56
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 24/123 (19%)

Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320
           S+S+   +    L    +A+ +  +      +  +      F+D ++  P     V+ L+
Sbjct: 378 SASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVA----FSDEMLPCP---ITVNMLL 430

Query: 321 RTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENT 380
             +V+   + +  MGST     M  A                    A    ++ TD E  
Sbjct: 431 HEVVE--KMSDITMGSTDCALPMLWAQK---------------TNTAADIFIVFTDCETN 473

Query: 381 QDN 383
            ++
Sbjct: 474 VED 476


>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
           hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
          Length = 678

 Score = 30.1 bits (67), Expect = 0.99
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 15/104 (14%)

Query: 43  VVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYLIRN 97
           V+RW      +K   +  I        Q  + V + A    T+         IE   I  
Sbjct: 24  VLRWDLSPEQIKTRTEQLIAQTK----QVYDTVGTIALKEVTYENCLQVLADIEVTYIVE 79

Query: 98  FE--NNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139
               +  +   +DREVR      + E + + S + + +S R D+
Sbjct: 80  RTMLDFPQHVSSDREVRAA----STEADKKLSRFDIEMSMREDV 119


>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
           admidas, membrane, integrin, titration, rossman fold,
           cell adhesion, transmembrane; NMR {Mus musculus}
          Length = 212

 Score = 29.7 bits (66), Expect = 1.4
 Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 15/118 (12%)

Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320
           S S +  +     V+   + +++++ +I     + R+G     +                
Sbjct: 13  SGSAQGHLSN---VQTLGSDLLKALNEISR---SGRIGFGSIVNMTFQHILKLTADSSQF 66

Query: 321 RTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378
           +  ++   +           DA+            +   R        +++VL+TD +
Sbjct: 67  QRELRKQLVSGKLATPKGQLDAVVQV----AICLGEIGWR-----NGTRFLVLVTDND 115


>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
           dehydrogenase; oxidoreductase; 1.82A {Streptococcus
           mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
           2qe0_A* 2esd_A* 1qi1_A*
          Length = 475

 Score = 29.0 bits (64), Expect = 2.0
 Identities = 13/106 (12%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 265 RHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIV 324
           +     + L+ DA      ++ +I    +   +    F+                +  I+
Sbjct: 329 KSADYVEGLINDANDKGATALTEIKR--EGNLICPILFDKVTTDMRLAWEEPFGPVLPII 386

Query: 325 KTFAIDENEMGSTAINDAMQTAY---DTIISSNEDEVHRMKNNLEA 367
           +  +++E      AI  + ++ Y    +I +++      +   LE 
Sbjct: 387 RVTSVEE------AIEISNKSEYGLQASIFTNDFPRAFGIAEQLEV 426


>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2,
           protein structure initiative; 2.50A {Deinococcus
           radiodurans} SCOP: c.94.1.1
          Length = 301

 Score = 28.0 bits (62), Expect = 4.8
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 17/102 (16%)

Query: 25  ITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFT 84
           +T       +          + +    AL QA + A        I  L EVS R      
Sbjct: 197 LTGHPFTFAVWA------YRKDNPPPAALLQAMREARRRG----IGHLAEVSQRHAEKLG 246

Query: 85  FPKQKIEEYLIRNFENNLKKNFTDREVRDIVR--DTAVEMNP 124
            P++ ++ YL      N + +    +   +    D AV  + 
Sbjct: 247 LPERVVQHYL-----WNFRYHLEAPDRLGLREFADLAVPGHA 283


>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
           conjugation, F1-ATPase-like quaternary structure, ring
           helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
           1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
          Length = 437

 Score = 27.9 bits (61), Expect = 5.4
 Identities = 19/188 (10%), Positives = 53/188 (28%), Gaps = 10/188 (5%)

Query: 270 KKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAI 329
           +  L      S+     +      + R   +      ++ P   + +   +         
Sbjct: 185 RGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLF 244

Query: 330 -----DENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNE 384
                D        I+  +     +I+S  E+   R+   ++    +  L    +     
Sbjct: 245 ITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASLEKLASLADALTKG 304

Query: 385 EGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDR 444
               +   A  Q     + +   +    ++A+   ++  S      + +  + N+     
Sbjct: 305 RKAGLRVVAGLQ-----STSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDPKTNEDMSLS 359

Query: 445 IGNEIFER 452
           +G    ER
Sbjct: 360 LGEHEVER 367


>2vdr_B Integrin beta-3; cell adhesion/immune system, alternative splicing,
           platelet integrin ALPHAIIBBETA3, polymorphism,
           glycoprotein, cell adhesion, calcium; HET: NAG MAN;
           2.40A {Homo sapiens} PDB: 2vc2_B* 2vdk_B* 2vdm_B*
           2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B*
           1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
          Length = 461

 Score = 26.9 bits (59), Expect = 8.8
 Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 261 SSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLI 320
           S S++  +     +++    +   ++K+      +R+G   F D+ +  P       + +
Sbjct: 121 SYSMKDDLWS---IQNLGTKLATQMRKL---TSNLRIGFGAFVDKPV-SPYMYISPPEAL 173

Query: 321 R--------TIVKTFAIDENEMGSTAINDAMQTAYDTIISSNED----------EVHRMK 362
                    T +  F        +  +    +      +S N D          +     
Sbjct: 174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCD 233

Query: 363 NNL----EAKKYIVLLTDG 377
             +    +A   +V  TD 
Sbjct: 234 EKIGWRNDASHLLVFTTDA 252


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0465    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,796,007
Number of extensions: 173203
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 34
Length of query: 458
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 362
Effective length of database: 3,365,806
Effective search space: 1218421772
Effective search space used: 1218421772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.8 bits)