RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] (458 letters) >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Score = 45.0 bits (105), Expect = 1e-05 Identities = 13/133 (9%), Positives = 37/133 (27%), Gaps = 4/133 (3%) Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGS 336 A + +++ + + F +P ++ I D + + Sbjct: 29 AKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLED 88 Query: 337 TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY----IVLLTDGENTQDNEEGIAICNK 392 + + + + +++ KK+ I + TD + + I + Sbjct: 89 IESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHS 148 Query: 393 AKSQGIRIMTIAF 405 K I + Sbjct: 149 LKKCDISLQFFLP 161 >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 Score = 43.1 bits (100), Expect = 4e-05 Identities = 22/180 (12%), Positives = 56/180 (31%), Gaps = 16/180 (8%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 + + + +VI + + + + + + + Sbjct: 22 TMMNFVRAVI---SQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGF 78 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392 +TAI + + + +A K ++++TDG+ D+ + + Sbjct: 79 TYTATAIQNVVHRLFH----------ASYGARRDAAKILIVITDGKKEGDSLDYKDVIPM 128 Query: 393 AKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIF 450 A + GI I + K +++ S F+ L I +++ +IF Sbjct: 129 ADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQ-NQLKEKIF 187 >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Score = 38.7 bits (89), Expect = 0.001 Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 22/199 (11%) Query: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK 318 +D S+ I V L ++ K++D ++G + + V + + + Sbjct: 8 LDGSN---SIYPWDSVTAFLNDLL---KRMDIGPKQTQVGIVQYGENVTHEFNLNKYSST 61 Query: 319 LIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378 V A + G A+ T + KK +V++TDGE Sbjct: 62 ---EEVLVAAKKIVQRGGRQTMTALGTDTARKEAFT----EARGARRGVKKVMVIVTDGE 114 Query: 379 NTQDNEEGIAICNKAKSQGIRIMTI----AFSVNKTQQEKARYFLSNCASPNS---FFEA 431 + DN + + + I+ +I +++ EK + + AS + FF Sbjct: 115 SH-DNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNV 173 Query: 432 NSTHELNKIFRDRIGNEIF 450 + L I +G IF Sbjct: 174 SDELALVTIV-KTLGERIF 191 >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 220 Score = 35.7 bits (81), Expect = 0.007 Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 16/183 (8%) Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKL------IRTIVKTFAID 330 ++ + +D + F+ + ++ L + Sbjct: 30 SIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQF 89 Query: 331 ENEMGSTAINDAMQTAYDTIISS---NEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEG- 386 + + G D M D +S + + K I+L T+ +N N+ Sbjct: 90 KGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAK 149 Query: 387 ----IAICNKAKSQGIRIMTIAFSVNKTQQEKARY--FLSNCASPNSFFEANSTHELNKI 440 + GI + + Y +S + + +L + Sbjct: 150 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDL 209 Query: 441 FRD 443 R Sbjct: 210 LRK 212 >d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 665 Score = 32.4 bits (73), Expect = 0.069 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%) Query: 42 DVVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYLIR 96 +V+RW +K + I Q + V + A T+ IE I Sbjct: 10 NVLRWDLSPEQIKTRTEQLIAQTK----QVYDTVGTIALKEVTYENCLQVLADIEVTYIV 65 Query: 97 NFE--NNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139 + + +DREVR + E + + S + + +S R D+ Sbjct: 66 ERTMLDFPQHVSSDREVRAA----STEADKKLSRFDIEMSMREDV 106 >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 179 Score = 32.5 bits (73), Expect = 0.081 Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 25/180 (13%) Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332 + D + V++ N + + A F+ ++ FS + + ++ Sbjct: 22 KILDFMKDVMKKCS-----NTSYQFAAVQFSTSYKTEFDFSD--YVKRKDPDALLKHVKH 74 Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392 + T A+ + +A K ++++TDGE T Sbjct: 75 MLLLTNTFGAINYVATEVFREELG------ARPDATKVLIIITDGEATDSGNI------- 121 Query: 393 AKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNS---FFEANSTHELNKIFRDRIGNEI 449 ++ I I + +E ++ L AS + ++ +L + + +I Sbjct: 122 DAAKDIIRYIIGIGKHFQTKE-SQETLHKFASKPASEFVKILDTFEKLKDLC-TELQKKI 179 >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 Score = 31.4 bits (70), Expect = 0.15 Identities = 30/224 (13%), Positives = 62/224 (27%), Gaps = 18/224 (8%) Query: 152 GIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDYQRDSEGQPLNCF-GQPADR 210 I+ +T A+ ++ S K+ V + ++ G P Sbjct: 245 TIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304 Query: 211 TVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYML-----YPGPLDPSLSEEHFVDSSSLR 265 ++ + + VG+ D ++ + Y++ + FVD+ L Sbjct: 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLL 364 Query: 266 HVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVK 325 I ALA + +F R +L+R + Sbjct: 365 PHIPADQFPAQALAC-----ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP 419 Query: 326 TFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKK 369 + M I +A + + N + + E K Sbjct: 420 RATYTQTHM--DFIIEAFKHVKE-----NAANIKGLTFTYEPKV 456 >d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 654 Score = 30.1 bits (67), Expect = 0.41 Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 15/103 (14%) Query: 44 VRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYL--IR 96 +RW +++ + I + ++V ++ ++ +E R Sbjct: 1 LRWDLSAQQIEERTRELIEQTK----RVYDQVGTQEFEDVSYESTLKALADVEVTYTVQR 56 Query: 97 NFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139 N + + +++R + E + + S + V +S R D+ Sbjct: 57 NILDFPQHVSPSKDIRTA----STEADKKLSEFDVEMSMREDV 95 >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Length = 433 Score = 29.1 bits (64), Expect = 0.72 Identities = 20/193 (10%), Positives = 57/193 (29%), Gaps = 18/193 (9%) Query: 270 KKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAI 329 + L S+ + + R + ++ P + + + Sbjct: 182 RGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLF 241 Query: 330 -----DENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNE 384 D I+ + +I+S E+ R+ + + + + + Sbjct: 242 ITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRL---------WLFIDELASLEKLA 292 Query: 385 EGIAICNKAKSQGIRIMTIAFSVNKT----QQEKARYFLSNCASPNSFFEANSTHELNKI 440 K + G+R++ S ++ ++A+ ++ S + + + N+ Sbjct: 293 SLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDPKTNED 352 Query: 441 FRDRIGNEIFERV 453 +G ER Sbjct: 353 MSLSLGEHEVERD 365 >d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Length = 220 Score = 27.6 bits (60), Expect = 2.6 Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 11/164 (6%) Query: 241 YYMLYPGPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGAT 300 P + ++ H V S + H D ++ + + + ++ Sbjct: 55 EAGSNPDTIRRMRADGHLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRIDGFAPKYMR 114 Query: 301 FFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHR 360 D + L I+ + D +T S E + Sbjct: 115 APYLSC--DAGCQGDLGGLGYHII---------DTNLDTKDYENNKPETTHLSAEKFNNE 163 Query: 361 MKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIA 404 + ++ A YIVL D + + KS+G R +T+ Sbjct: 164 LSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVG 207 >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 174 Score = 26.7 bits (58), Expect = 4.3 Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 3/54 (5%) Query: 358 VHRMKNNLEAKKYIVLLTDGENTQ---DNEEGIAICNKAKSQGIRIMTIAFSVN 408 + + A ++ TD E + + +++ A + N Sbjct: 88 MLWAQKTNTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSN 141 >d2g0ua1 a.2.20.1 (A:1-84) BsaL needle protein {Burkholderia pseudomallei [TaxId: 28450]} Length = 84 Score = 26.0 bits (57), Expect = 6.3 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Query: 247 GPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKID 289 P DP+ + ++ + +L R+A +S ++S+K ID Sbjct: 46 NPSDPTALAN-------YQMIMSEYNLYRNAQSSAVKSMKDID 81 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.133 0.378 Gapped Lambda K H 0.267 0.0452 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,652,327 Number of extensions: 75575 Number of successful extensions: 192 Number of sequences better than 10.0: 1 Number of HSP's gapped: 191 Number of HSP's successfully gapped: 19 Length of query: 458 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 370 Effective length of database: 1,199,356 Effective search space: 443761720 Effective search space used: 443761720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.3 bits)