RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780388|ref|YP_003064801.1| hypothetical protein
CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 45.0 bits (105), Expect = 1e-05
Identities = 13/133 (9%), Positives = 37/133 (27%), Gaps = 4/133 (3%)
Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGS 336
A + +++ + + F +P ++ I D + +
Sbjct: 29 AKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLED 88
Query: 337 TAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKY----IVLLTDGENTQDNEEGIAICNK 392
+ + + + +++ KK+ I + TD + + I +
Sbjct: 89 IESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHS 148
Query: 393 AKSQGIRIMTIAF 405
K I +
Sbjct: 149 LKKCDISLQFFLP 161
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 43.1 bits (100), Expect = 4e-05
Identities = 22/180 (12%), Positives = 56/180 (31%), Gaps = 16/180 (8%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
+ + + +VI + + + + + + +
Sbjct: 22 TMMNFVRAVI---SQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGF 78
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
+TAI + + + +A K ++++TDG+ D+ + +
Sbjct: 79 TYTATAIQNVVHRLFH----------ASYGARRDAAKILIVITDGKKEGDSLDYKDVIPM 128
Query: 393 AKSQGIRIMTIAF--SVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIF 450
A + GI I + K +++ S F+ L I +++ +IF
Sbjct: 129 ADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQ-NQLKEKIF 187
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 38.7 bits (89), Expect = 0.001
Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 22/199 (11%)
Query: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHK 318
+D S+ I V L ++ K++D ++G + + V + + +
Sbjct: 8 LDGSN---SIYPWDSVTAFLNDLL---KRMDIGPKQTQVGIVQYGENVTHEFNLNKYSST 61
Query: 319 LIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGE 378
V A + G A+ T + KK +V++TDGE
Sbjct: 62 ---EEVLVAAKKIVQRGGRQTMTALGTDTARKEAFT----EARGARRGVKKVMVIVTDGE 114
Query: 379 NTQDNEEGIAICNKAKSQGIRIMTI----AFSVNKTQQEKARYFLSNCASPNS---FFEA 431
+ DN + + + I+ +I +++ EK + + AS + FF
Sbjct: 115 SH-DNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNV 173
Query: 432 NSTHELNKIFRDRIGNEIF 450
+ L I +G IF
Sbjct: 174 SDELALVTIV-KTLGERIF 191
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 220
Score = 35.7 bits (81), Expect = 0.007
Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 16/183 (8%)
Query: 277 ALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKL------IRTIVKTFAID 330
++ + +D + F+ + ++ L +
Sbjct: 30 SIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQF 89
Query: 331 ENEMGSTAINDAMQTAYDTIISS---NEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEG- 386
+ + G D M D +S + + K I+L T+ +N N+
Sbjct: 90 KGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAK 149
Query: 387 ----IAICNKAKSQGIRIMTIAFSVNKTQQEKARY--FLSNCASPNSFFEANSTHELNKI 440
+ GI + + Y +S + + +L +
Sbjct: 150 ASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDL 209
Query: 441 FRD 443
R
Sbjct: 210 LRK 212
>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 665
Score = 32.4 bits (73), Expect = 0.069
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 42 DVVRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYLIR 96
+V+RW +K + I Q + V + A T+ IE I
Sbjct: 10 NVLRWDLSPEQIKTRTEQLIAQTK----QVYDTVGTIALKEVTYENCLQVLADIEVTYIV 65
Query: 97 NFE--NNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139
+ + +DREVR + E + + S + + +S R D+
Sbjct: 66 ERTMLDFPQHVSSDREVRAA----STEADKKLSRFDIEMSMREDV 106
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 32.5 bits (73), Expect = 0.081
Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 25/180 (13%)
Query: 273 LVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDEN 332
+ D + V++ N + + A F+ ++ FS + + ++
Sbjct: 22 KILDFMKDVMKKCS-----NTSYQFAAVQFSTSYKTEFDFSD--YVKRKDPDALLKHVKH 74
Query: 333 EMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNEEGIAICNK 392
+ T A+ + +A K ++++TDGE T
Sbjct: 75 MLLLTNTFGAINYVATEVFREELG------ARPDATKVLIIITDGEATDSGNI------- 121
Query: 393 AKSQGIRIMTIAFSVNKTQQEKARYFLSNCASPNS---FFEANSTHELNKIFRDRIGNEI 449
++ I I + +E ++ L AS + ++ +L + + +I
Sbjct: 122 DAAKDIIRYIIGIGKHFQTKE-SQETLHKFASKPASEFVKILDTFEKLKDLC-TELQKKI 179
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 31.4 bits (70), Expect = 0.15
Identities = 30/224 (13%), Positives = 62/224 (27%), Gaps = 18/224 (8%)
Query: 152 GIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDYQRDSEGQPLNCF-GQPADR 210
I+ +T A+ ++ S K+ V + ++ G P
Sbjct: 245 TIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304
Query: 211 TVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYML-----YPGPLDPSLSEEHFVDSSSLR 265
++ + + VG+ D ++ + Y++ + FVD+ L
Sbjct: 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLL 364
Query: 266 HVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVK 325
I ALA + +F R +L+R +
Sbjct: 365 PHIPADQFPAQALAC-----ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIP 419
Query: 326 TFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKK 369
+ M I +A + + N + + E K
Sbjct: 420 RATYTQTHM--DFIIEAFKHVKE-----NAANIKGLTFTYEPKV 456
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 654
Score = 30.1 bits (67), Expect = 0.41
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 15/103 (14%)
Query: 44 VRWSYYEHALKQAAQTAIITASVPLIQSLEEVSSRAKNSFTF-----PKQKIEEYL--IR 96
+RW +++ + I + ++V ++ ++ +E R
Sbjct: 1 LRWDLSAQQIEERTRELIEQTK----RVYDQVGTQEFEDVSYESTLKALADVEVTYTVQR 56
Query: 97 NFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDL 139
N + + +++R + E + + S + V +S R D+
Sbjct: 57 NILDFPQHVSPSKDIRTA----STEADKKLSEFDVEMSMREDV 95
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.1 bits (64), Expect = 0.72
Identities = 20/193 (10%), Positives = 57/193 (29%), Gaps = 18/193 (9%)
Query: 270 KKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAI 329
+ L S+ + + R + ++ P + + +
Sbjct: 182 RGFLEGTLAESLFAGSNEASKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLF 241
Query: 330 -----DENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQDNE 384
D I+ + +I+S E+ R+ + + + + +
Sbjct: 242 ITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRL---------WLFIDELASLEKLA 292
Query: 385 EGIAICNKAKSQGIRIMTIAFSVNKT----QQEKARYFLSNCASPNSFFEANSTHELNKI 440
K + G+R++ S ++ ++A+ ++ S + + + N+
Sbjct: 293 SLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDPKTNED 352
Query: 441 FRDRIGNEIFERV 453
+G ER
Sbjct: 353 MSLSLGEHEVERD 365
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 27.6 bits (60), Expect = 2.6
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 11/164 (6%)
Query: 241 YYMLYPGPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGAT 300
P + ++ H V S + H D ++ + + + ++
Sbjct: 55 EAGSNPDTIRRMRADGHLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRIDGFAPKYMR 114
Query: 301 FFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHR 360
D + L I+ + D +T S E +
Sbjct: 115 APYLSC--DAGCQGDLGGLGYHII---------DTNLDTKDYENNKPETTHLSAEKFNNE 163
Query: 361 MKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIA 404
+ ++ A YIVL D + + KS+G R +T+
Sbjct: 164 LSADVGANSYIVLSHDVHEQTVVSLTQKLIDTLKSKGYRAVTVG 207
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein,
RoRNP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 174
Score = 26.7 bits (58), Expect = 4.3
Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 358 VHRMKNNLEAKKYIVLLTDGENTQ---DNEEGIAICNKAKSQGIRIMTIAFSVN 408
+ + A ++ TD E + + +++ A + N
Sbjct: 88 MLWAQKTNTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSN 141
>d2g0ua1 a.2.20.1 (A:1-84) BsaL needle protein {Burkholderia
pseudomallei [TaxId: 28450]}
Length = 84
Score = 26.0 bits (57), Expect = 6.3
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 247 GPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKID 289
P DP+ + ++ + +L R+A +S ++S+K ID
Sbjct: 46 NPSDPTALAN-------YQMIMSEYNLYRNAQSSAVKSMKDID 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.378
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,652,327
Number of extensions: 75575
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 19
Length of query: 458
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,199,356
Effective search space: 443761720
Effective search space used: 443761720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)