BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780388|ref|YP_003064801.1| hypothetical protein
CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62]
(458 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 458
Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/458 (100%), Positives = 458/458 (100%)
Query: 1 MVFDTKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTA 60
MVFDTKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTA
Sbjct: 1 MVFDTKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTA 60
Query: 61 IITASVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAV 120
IITASVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAV
Sbjct: 61 IITASVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAV 120
Query: 121 EMNPRKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQ 180
EMNPRKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQ
Sbjct: 121 EMNPRKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQ 180
Query: 181 WVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSL 240
WVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSL
Sbjct: 181 WVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSL 240
Query: 241 YYMLYPGPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGAT 300
YYMLYPGPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGAT
Sbjct: 241 YYMLYPGPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGAT 300
Query: 301 FFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHR 360
FFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHR
Sbjct: 301 FFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHR 360
Query: 361 MKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLS 420
MKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLS
Sbjct: 361 MKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLS 420
Query: 421 NCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK 458
NCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK
Sbjct: 421 NCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK 458
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 16/178 (8%)
Query: 285 IKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAIND-AM 343
IK I +VN+ VR G F+ +++ +WGV + I + GST + +
Sbjct: 206 IKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLI------FGSTTKSTPGL 259
Query: 344 QTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQ---DNEEGIAICNKAKSQGIRI 400
+ AY+ I + E H K + + KKYI+ LTDGEN+ DN+E + CN+AK +G +
Sbjct: 260 EYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV 319
Query: 401 MTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK 458
I Q E A FL NCASP+ F+ ++ +L+ F RIG E+ ++ I K
Sbjct: 320 YAIG-----VQAEAADQFLKNCASPDRFYSVQNSRKLHDAFL-RIGKEMVKQRILYNK 371
Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Query: 17 SCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAII-TASVPLIQSLEEV 75
+C G I+TA+L+PV+ V G++++ + + L +++ TA+ L Q
Sbjct: 12 NCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKILNQENGNN 71
Query: 76 SSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVE--MNPRKSAYQVVL 133
+ KN F++ + I+ +F N L++N +++ +I R T++ ++ + Y +
Sbjct: 72 GKKQKNDFSY--RIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHKDYNLSA 129
Query: 134 SSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDY 192
SRY++ + + + L+ T +V S + G+ + V+D S SM D+
Sbjct: 130 VSRYEMPFIFCTFPWCANSSHAPLLIT----SSVKISSKSDIGLDMMMVLDVSLSMNDH 184
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 249 LDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVIS 308
LD S S E F DSS I K + ++ +++ +K I +VN+ V+ G F++++
Sbjct: 178 LDVSRSMESFFDSS-----ITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE 232
Query: 309 DPSFSWGVHKLIRTI--VKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLE 366
WGV L R I + F + N ++ AY+ I H +
Sbjct: 233 FFLLEWGVSHLQRKIKYLSKFGVSTNS------TPGLKYAYNQIFDMQGMRQHCNTEDAN 286
Query: 367 AKKYIVLLTDGEN--TQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS 424
KK IV +TDGEN T+++++ + CN+AK +G + I V ++ + FL CAS
Sbjct: 287 YKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHE-----FLRACAS 341
Query: 425 PNSFFEANSTHELNKIFRDRIGNEIFERVI 454
PNSF+ + H + F IG +I + I
Sbjct: 342 PNSFYLVENPHSMYDAF-SHIGKDIVTKRI 370
Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 20 GHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLIQSLE------ 73
G I+TA+ +P++ V GM+++V + + L +++ A+ ++
Sbjct: 17 GGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKK 76
Query: 74 ----EVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEM--NPRKS 127
++ R KN++ +F N L+ N ++ DIVR T++++ P+
Sbjct: 77 LKGGDILCRIKNTWNM-----------SFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125
Query: 128 AYQVVLSSRYDLLL 141
Y + SRY + L
Sbjct: 126 GYSISAISRYKIPL 139
>gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 420
Score = 69.3 bits (168), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/454 (22%), Positives = 195/454 (42%), Gaps = 69/454 (15%)
Query: 5 TKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITA 64
++F FY KK I S +F II AL + L + G L+ V+ W Y +++++ A AI+
Sbjct: 5 SRFRFYFKKGIASEKANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAG 64
Query: 65 SVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEMNP 124
+ ++ +L + R ++ K+ + + R +N++K++ + + +T ++
Sbjct: 65 ASKMVSNLSRLGDRFESISNHAKRALIDDAKRFIKNHIKESLSGYSA--VFYNTEIQ--- 119
Query: 125 RKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVID 184
+V SSR + + + + ++ + Y+ + S + +
Sbjct: 120 -----NIVNSSRISM---------------THMANNRLDSSNNTIFYNMDVMTSYDYRLQ 159
Query: 185 FSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYML 244
F +L+ QR Q + F R ++G R L +V + S++ +
Sbjct: 160 FIEHLLN-QR--YNQKIVSFIPALLRI---------EMGERPIFLIELVVDLSGSMHCAM 207
Query: 245 YPGPLDPSLSEEHFVDSSSLRHVIKKKHL--VRDALASVIRSIKKIDNVNDTVRMGATFF 302
P D V+S+ + K+ + +++AL + SI + +V + V MG +
Sbjct: 208 NSDPED--------VNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGY 259
Query: 303 NDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMK 362
RV + SWG K+ + + + +D + T AM+ AY + S D+
Sbjct: 260 TTRVEKNIEPSWGTEKVRQYVTRD--MDSLILKPTDSTPAMKQAYQILTS---DKKRSFF 314
Query: 363 NN----------LEAKKYIVLLTDGENT--QDNEEGIAICNKAKSQGIRIMTIAFSVNKT 410
N L +K+I+ LTDGEN + N I IC+KAK I+I+TI+ + +
Sbjct: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374
Query: 411 QQEKARYFLSNC-ASPNSFFEANSTHELNKIFRD 443
Q L C +SP + + L +F++
Sbjct: 375 GQR----LLKTCVSSPEYHYNVVNADSLIHVFQN 404
>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 398
Score = 57.8 bits (138), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 94/446 (21%), Positives = 193/446 (43%), Gaps = 66/446 (14%)
Query: 25 ITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLI--QSLEEVSSRAKNS 82
+TA+++ V +D+ Y + ++ A A+++ ++ +++++ +++ +
Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
Query: 83 FTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDLLLN 142
T K++I+++L + + +++N D + + T + NP Q + S+ +
Sbjct: 61 STIFKKQIKKHLKQG--SYIRENAGDIAQKAQINITKDKNNP----LQYIAESKAQYEIP 114
Query: 143 PLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDY----QRDSEG 198
+LFL+ + I S L + + + +SI V+D SRSM D D+
Sbjct: 115 TENLFLKGL-IPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNN 173
Query: 199 QPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYMLYPGPLDPSLSEEHF 258
N + P KS+ S+N KS Y P P + +
Sbjct: 174 MTSNKYLLPPPPK-KSFWSKN----------------TTKSKYA---PAPAPANRKIDVL 213
Query: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISD--PSFSWGV 316
++S+ + + S+ ++I++ N+ +VR+G +N ++ + S +
Sbjct: 214 IESAG------------NLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCTPLSNNL 259
Query: 317 HKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTD 376
++ VK+ N +T AM AY + + E H + KK+++ +TD
Sbjct: 260 NE-----VKSRLNKLNPYENTNTYPAMHHAYRELYNEKESS-HNTIGSTRLKKFVIFITD 313
Query: 377 GENT-----QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA-SPNSFFE 430
GEN+ Q+ + IC ++ G++I ++A S Q+ L C S FF
Sbjct: 314 GENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQD----LLRKCTDSSGQFFA 369
Query: 431 ANSTHELNKIFRDRIGNEIFERVIRI 456
N + EL + F D+I ++I E+ +RI
Sbjct: 370 VNDSRELLESF-DKITDKIQEQSVRI 394
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 411
Score = 27.7 bits (60), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 309 DPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAK 368
DP ++ H I F + N+ G D + +N + H +
Sbjct: 258 DPYYATWDHFPYSFIKNVFDMTSNQFG------------DGQVLTNTN--HCFPHGASQN 303
Query: 369 KYIVLLTDGENTQDN-------EEGIAICN---KAKSQGIRIMTIAFSVNKTQQEKARYF 418
KY+++L G + E+ + C+ K G +TI FSV + + RY
Sbjct: 304 KYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITI-FSVGFSPDQDTRYT 362
Query: 419 LSNCAS-PNSFFEANSTHELNKIFRDRIGNEI 449
L CAS P+ ++E NS + I + N I
Sbjct: 363 LRQCASDPSKYYEINSDENVMPIAKSLARNVI 394
>gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 27.7 bits (60), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 309 DPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAK 368
DP ++ H I F + N+ G D + +N + H +
Sbjct: 258 DPYYATWDHFPYSFIKNVFDMTSNQFG------------DGQVLTNTN--HCFPHGASQN 303
Query: 369 KYIVLLTDGENTQDN-------EEGIAICN---KAKSQGIRIMTIAFSVNKTQQEKARYF 418
KY+++L G + E+ + C+ K G +TI FSV + + RY
Sbjct: 304 KYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITI-FSVGFSPDQDTRYT 362
Query: 419 LSNCAS-PNSFFEANSTHELNKIFRDRIGNEI 449
L CAS P+ ++E NS + I + N I
Sbjct: 363 LRQCASDPSKYYEINSDENVMPIAKSLARNVI 394
>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 27.7 bits (60), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 309 DPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAK 368
DP ++ H I F + N+ G D + +N + H +
Sbjct: 258 DPYYATWDHFPYSFIKNVFDMTSNQFG------------DGQVLTNTN--HCFPHGASQN 303
Query: 369 KYIVLLTDGENTQDN-------EEGIAICN---KAKSQGIRIMTIAFSVNKTQQEKARYF 418
KY+++L G + E+ + C+ K G +TI FSV + + RY
Sbjct: 304 KYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITI-FSVGFSPDQDTRYT 362
Query: 419 LSNCAS-PNSFFEANSTHELNKIFRDRIGNEI 449
L CAS P+ ++E NS + I + N I
Sbjct: 363 LRQCASDPSKYYEINSDENVMPIAKSLARNVI 394
>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 26.9 bits (58), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 405 FSVNKTQQEKARYFLSNCAS-PNSFFEANS 433
FSV + + RY L CAS P+ ++E NS
Sbjct: 349 FSVGFSPDQDTRYTLRQCASDPSKYYEINS 378
>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 405
Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 409 KTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445
K + A + +SNC P++ F ++++ +F D+I
Sbjct: 343 KLLNKGADFIVSNCILPDTGFVGKEWNKVSIVFPDKI 379
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 125 RKSAYQVVLSSRYDLLLNPLSLFLRSMGI--KSWLIQTKAEAETVSRSYHKEHGVSIQWV 182
R S Y V+ +D P R + K W Q V R + G+SI W
Sbjct: 68 RASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIK----VMRKQLQSIGLSIDWS 123
Query: 183 IDFSRSMLDY 192
DF+ +DY
Sbjct: 124 KDFATCDVDY 133
>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 354
Score = 23.1 bits (48), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 22 FFIITALLMPVMLGVGGMLVDVVRWSYYE 50
FF + +L+ ++L + + V + WSY++
Sbjct: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQ 217
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,646
Number of Sequences: 1233
Number of extensions: 11686
Number of successful extensions: 50
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 24
length of query: 458
length of database: 328,796
effective HSP length: 77
effective length of query: 381
effective length of database: 233,855
effective search space: 89098755
effective search space used: 89098755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)