BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] (458 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/458 (100%), Positives = 458/458 (100%) Query: 1 MVFDTKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTA 60 MVFDTKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTA Sbjct: 1 MVFDTKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTA 60 Query: 61 IITASVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAV 120 IITASVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAV Sbjct: 61 IITASVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAV 120 Query: 121 EMNPRKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQ 180 EMNPRKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQ Sbjct: 121 EMNPRKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQ 180 Query: 181 WVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSL 240 WVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSL Sbjct: 181 WVIDFSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSL 240 Query: 241 YYMLYPGPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGAT 300 YYMLYPGPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGAT Sbjct: 241 YYMLYPGPLDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGAT 300 Query: 301 FFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHR 360 FFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHR Sbjct: 301 FFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHR 360 Query: 361 MKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLS 420 MKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLS Sbjct: 361 MKNNLEAKKYIVLLTDGENTQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLS 420 Query: 421 NCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK 458 NCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK Sbjct: 421 NCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK 458 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 92.0 bits (227), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 16/178 (8%) Query: 285 IKKIDNVNDTVRMGATFFNDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAIND-AM 343 IK I +VN+ VR G F+ +++ +WGV + I + GST + + Sbjct: 206 IKSIPDVNNVVRSGLVTFSSKIVQTFPLAWGVQHIQEKINRLI------FGSTTKSTPGL 259 Query: 344 QTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTDGENTQ---DNEEGIAICNKAKSQGIRI 400 + AY+ I + E H K + + KKYI+ LTDGEN+ DN+E + CN+AK +G + Sbjct: 260 EYAYNKIFDAKEKLEHIAKGHDDYKKYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIV 319 Query: 401 MTIAFSVNKTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRIGNEIFERVIRITK 458 I Q E A FL NCASP+ F+ ++ +L+ F RIG E+ ++ I K Sbjct: 320 YAIG-----VQAEAADQFLKNCASPDRFYSVQNSRKLHDAFL-RIGKEMVKQRILYNK 371 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 86/179 (48%), Gaps = 9/179 (5%) Query: 17 SCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAII-TASVPLIQSLEEV 75 +C G I+TA+L+PV+ V G++++ + + L +++ TA+ L Q Sbjct: 12 NCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSLLYTATKILNQENGNN 71 Query: 76 SSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVE--MNPRKSAYQVVL 133 + KN F++ + I+ +F N L++N +++ +I R T++ ++ + Y + Sbjct: 72 GKKQKNDFSY--RIIKNIWQTDFRNELRENGFAQDINNIERSTSLSIIIDDQHKDYNLSA 129 Query: 134 SSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDY 192 SRY++ + + + L+ T +V S + G+ + V+D S SM D+ Sbjct: 130 VSRYEMPFIFCTFPWCANSSHAPLLIT----SSVKISSKSDIGLDMMMVLDVSLSMNDH 184 >gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter asiaticus str. psy62] Length = 374 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 21/210 (10%) Query: 249 LDPSLSEEHFVDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVIS 308 LD S S E F DSS I K + ++ +++ +K I +VN+ V+ G F++++ Sbjct: 178 LDVSRSMESFFDSS-----ITKIDMAIKSINAMLEEVKLIPDVNNVVQSGLVTFSNKIEE 232 Query: 309 DPSFSWGVHKLIRTI--VKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLE 366 WGV L R I + F + N ++ AY+ I H + Sbjct: 233 FFLLEWGVSHLQRKIKYLSKFGVSTNS------TPGLKYAYNQIFDMQGMRQHCNTEDAN 286 Query: 367 AKKYIVLLTDGEN--TQDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCAS 424 KK IV +TDGEN T+++++ + CN+AK +G + I V ++ + FL CAS Sbjct: 287 YKKIIVFMTDGENLSTKEDQQSLYYCNEAKKRGAIVYAIGIRVIRSHE-----FLRACAS 341 Query: 425 PNSFFEANSTHELNKIFRDRIGNEIFERVI 454 PNSF+ + H + F IG +I + I Sbjct: 342 PNSFYLVENPHSMYDAF-SHIGKDIVTKRI 370 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 23/134 (17%) Query: 20 GHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLIQSLE------ 73 G I+TA+ +P++ V GM+++V + + L +++ A+ ++ Sbjct: 17 GGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHAATQIMNEGNGNNRKK 76 Query: 74 ----EVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEM--NPRKS 127 ++ R KN++ +F N L+ N ++ DIVR T++++ P+ Sbjct: 77 LKGGDILCRIKNTWNM-----------SFRNELRDNGFVNDIDDIVRSTSLDIVVVPQNE 125 Query: 128 AYQVVLSSRYDLLL 141 Y + SRY + L Sbjct: 126 GYSISAISRYKIPL 139 >gi|254781110|ref|YP_003065523.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 69.3 bits (168), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 101/454 (22%), Positives = 195/454 (42%), Gaps = 69/454 (15%) Query: 5 TKFIFYSKKLIKSCTGHFFIITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITA 64 ++F FY KK I S +F II AL + L + G L+ V+ W Y +++++ A AI+ Sbjct: 5 SRFRFYFKKGIASEKANFSIIFALSVMSFLLLIGFLIYVLDWHYKKNSMESANNAAILAG 64 Query: 65 SVPLIQSLEEVSSRAKNSFTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEMNP 124 + ++ +L + R ++ K+ + + R +N++K++ + + +T ++ Sbjct: 65 ASKMVSNLSRLGDRFESISNHAKRALIDDAKRFIKNHIKESLSGYSA--VFYNTEIQ--- 119 Query: 125 RKSAYQVVLSSRYDLLLNPLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVID 184 +V SSR + + + + ++ + Y+ + S + + Sbjct: 120 -----NIVNSSRISM---------------THMANNRLDSSNNTIFYNMDVMTSYDYRLQ 159 Query: 185 FSRSMLDYQRDSEGQPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYML 244 F +L+ QR Q + F R ++G R L +V + S++ + Sbjct: 160 FIEHLLN-QR--YNQKIVSFIPALLRI---------EMGERPIFLIELVVDLSGSMHCAM 207 Query: 245 YPGPLDPSLSEEHFVDSSSLRHVIKKKHL--VRDALASVIRSIKKIDNVNDTVRMGATFF 302 P D V+S+ + K+ + +++AL + SI + +V + V MG + Sbjct: 208 NSDPED--------VNSAPICQDKKRTKMAALKNALLLFLDSIDLLSHVKEDVYMGLIGY 259 Query: 303 NDRVISDPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMK 362 RV + SWG K+ + + + +D + T AM+ AY + S D+ Sbjct: 260 TTRVEKNIEPSWGTEKVRQYVTRD--MDSLILKPTDSTPAMKQAYQILTS---DKKRSFF 314 Query: 363 NN----------LEAKKYIVLLTDGENT--QDNEEGIAICNKAKSQGIRIMTIAFSVNKT 410 N L +K+I+ LTDGEN + N I IC+KAK I+I+TI+ + + Sbjct: 315 TNFFRQGVKIPSLPFQKFIIFLTDGENNNFKSNVNTIKICDKAKENFIKIVTISINASPN 374 Query: 411 QQEKARYFLSNC-ASPNSFFEANSTHELNKIFRD 443 Q L C +SP + + L +F++ Sbjct: 375 GQR----LLKTCVSSPEYHYNVVNADSLIHVFQN 404 >gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 57.8 bits (138), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 94/446 (21%), Positives = 193/446 (43%), Gaps = 66/446 (14%) Query: 25 ITALLMPVMLGVGGMLVDVVRWSYYEHALKQAAQTAIITASVPLI--QSLEEVSSRAKNS 82 +TA+++ V +D+ Y + ++ A A+++ ++ +++++ +++ + Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60 Query: 83 FTFPKQKIEEYLIRNFENNLKKNFTDREVRDIVRDTAVEMNPRKSAYQVVLSSRYDLLLN 142 T K++I+++L + + +++N D + + T + NP Q + S+ + Sbjct: 61 STIFKKQIKKHLKQG--SYIRENAGDIAQKAQINITKDKNNP----LQYIAESKAQYEIP 114 Query: 143 PLSLFLRSMGIKSWLIQTKAEAETVSRSYHKEHGVSIQWVIDFSRSMLDY----QRDSEG 198 +LFL+ + I S L + + + +SI V+D SRSM D D+ Sbjct: 115 TENLFLKGL-IPSALTNLSLRSTGIIERSSENLAISICMVLDVSRSMEDLYLQKHNDNNN 173 Query: 199 QPLNCFGQPADRTVKSYSSQNGKVGIRDEKLSPYMVSCNKSLYYMLYPGPLDPSLSEEHF 258 N + P KS+ S+N KS Y P P + + Sbjct: 174 MTSNKYLLPPPPK-KSFWSKN----------------TTKSKYA---PAPAPANRKIDVL 213 Query: 259 VDSSSLRHVIKKKHLVRDALASVIRSIKKIDNVNDTVRMGATFFNDRVISD--PSFSWGV 316 ++S+ + + S+ ++I++ N+ +VR+G +N ++ + S + Sbjct: 214 IESAG------------NLVNSIQKAIQEKKNL--SVRIGTIAYNIGIVGNQCTPLSNNL 259 Query: 317 HKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAKKYIVLLTD 376 ++ VK+ N +T AM AY + + E H + KK+++ +TD Sbjct: 260 NE-----VKSRLNKLNPYENTNTYPAMHHAYRELYNEKESS-HNTIGSTRLKKFVIFITD 313 Query: 377 GENT-----QDNEEGIAICNKAKSQGIRIMTIAFSVNKTQQEKARYFLSNCA-SPNSFFE 430 GEN+ Q+ + IC ++ G++I ++A S Q+ L C S FF Sbjct: 314 GENSGASAYQNTLNTLQICEYMRNAGMKIYSVAVSAPPEGQD----LLRKCTDSSGQFFA 369 Query: 431 ANSTHELNKIFRDRIGNEIFERVIRI 456 N + EL + F D+I ++I E+ +RI Sbjct: 370 VNDSRELLESF-DKITDKIQEQSVRI 394 >gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62] Length = 411 Score = 27.7 bits (60), Expect = 0.45, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 26/152 (17%) Query: 309 DPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAK 368 DP ++ H I F + N+ G D + +N + H + Sbjct: 258 DPYYATWDHFPYSFIKNVFDMTSNQFG------------DGQVLTNTN--HCFPHGASQN 303 Query: 369 KYIVLLTDGENTQDN-------EEGIAICN---KAKSQGIRIMTIAFSVNKTQQEKARYF 418 KY+++L G + E+ + C+ K G +TI FSV + + RY Sbjct: 304 KYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITI-FSVGFSPDQDTRYT 362 Query: 419 LSNCAS-PNSFFEANSTHELNKIFRDRIGNEI 449 L CAS P+ ++E NS + I + N I Sbjct: 363 LRQCASDPSKYYEINSDENVMPIAKSLARNVI 394 >gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 27.7 bits (60), Expect = 0.46, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 26/152 (17%) Query: 309 DPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAK 368 DP ++ H I F + N+ G D + +N + H + Sbjct: 258 DPYYATWDHFPYSFIKNVFDMTSNQFG------------DGQVLTNTN--HCFPHGASQN 303 Query: 369 KYIVLLTDGENTQDN-------EEGIAICN---KAKSQGIRIMTIAFSVNKTQQEKARYF 418 KY+++L G + E+ + C+ K G +TI FSV + + RY Sbjct: 304 KYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITI-FSVGFSPDQDTRYT 362 Query: 419 LSNCAS-PNSFFEANSTHELNKIFRDRIGNEI 449 L CAS P+ ++E NS + I + N I Sbjct: 363 LRQCASDPSKYYEINSDENVMPIAKSLARNVI 394 >gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 27.7 bits (60), Expect = 0.46, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 26/152 (17%) Query: 309 DPSFSWGVHKLIRTIVKTFAIDENEMGSTAINDAMQTAYDTIISSNEDEVHRMKNNLEAK 368 DP ++ H I F + N+ G D + +N + H + Sbjct: 258 DPYYATWDHFPYSFIKNVFDMTSNQFG------------DGQVLTNTN--HCFPHGASQN 303 Query: 369 KYIVLLTDGENTQDN-------EEGIAICN---KAKSQGIRIMTIAFSVNKTQQEKARYF 418 KY+++L G + E+ + C+ K G +TI FSV + + RY Sbjct: 304 KYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITI-FSVGFSPDQDTRYT 362 Query: 419 LSNCAS-PNSFFEANSTHELNKIFRDRIGNEI 449 L CAS P+ ++E NS + I + N I Sbjct: 363 LRQCASDPSKYYEINSDENVMPIAKSLARNVI 394 >gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 26.9 bits (58), Expect = 0.76, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 405 FSVNKTQQEKARYFLSNCAS-PNSFFEANS 433 FSV + + RY L CAS P+ ++E NS Sbjct: 349 FSVGFSPDQDTRYTLRQCASDPSKYYEINS 378 >gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 405 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 10/37 (27%), Positives = 21/37 (56%) Query: 409 KTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445 K + A + +SNC P++ F ++++ +F D+I Sbjct: 343 KLLNKGADFIVSNCILPDTGFVGKEWNKVSIVFPDKI 379 >gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 869 Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 125 RKSAYQVVLSSRYDLLLNPLSLFLRSMGI--KSWLIQTKAEAETVSRSYHKEHGVSIQWV 182 R S Y V+ +D P R + K W Q V R + G+SI W Sbjct: 68 RASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIK----VMRKQLQSIGLSIDWS 123 Query: 183 IDFSRSMLDY 192 DF+ +DY Sbjct: 124 KDFATCDVDY 133 >gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 23.1 bits (48), Expect = 9.2, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 18/29 (62%) Query: 22 FFIITALLMPVMLGVGGMLVDVVRWSYYE 50 FF + +L+ ++L + + V + WSY++ Sbjct: 189 FFTVRKVLIMILLFIATLTVLDIGWSYHQ 217 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.133 0.378 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 288,646 Number of Sequences: 1233 Number of extensions: 11686 Number of successful extensions: 50 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 24 length of query: 458 length of database: 328,796 effective HSP length: 77 effective length of query: 381 effective length of database: 233,855 effective search space: 89098755 effective search space used: 89098755 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)