Query gi|254780389|ref|YP_003064802.1| hypothetical protein CLIBASIA_01370 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 12:25:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780389.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2q22_A Uncharacterized protei 67.4 3.3 9.7E-05 22.6 2.1 24 13-36 90-119 (139)
2 >1omw_A G-protein coupled rece 13.1 70 0.0021 15.8 0.8 23 10-32 2-24 (114)
3 >1m93_C Serine proteinase inhi 12.3 1.4E+02 0.004 14.3 2.1 15 2-16 15-32 (41)
4 >1v2b_A 23-kDa polypeptide of 10.6 1.1E+02 0.0033 14.8 1.2 13 11-23 5-17 (36)
5 >3g33_A Cell division protein 9.2 1.3E+02 0.0038 14.4 1.1 22 10-31 8-29 (101)
6 >3cc6_A Protein tyrosine kinas 8.4 2E+02 0.0058 13.5 1.8 27 9-35 10-36 (96)
7 >3i6u_A CDS1, serine/threonine 8.3 1.3E+02 0.0037 14.5 0.8 24 10-33 9-32 (95)
8 >3g2f_A Bone morphogenetic pro 7.9 1.3E+02 0.004 14.3 0.8 25 8-32 10-34 (95)
9 >2i6l_A Mitogen-activated prot 7.7 1.8E+02 0.0052 13.7 1.3 29 4-32 4-32 (103)
10 >1rjb_A FL cytokine receptor; 7.3 1.7E+02 0.005 13.8 1.0 25 10-34 7-31 (94)
No 1
>>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} (A:)
Probab=67.39 E-value=3.3 Score=22.60 Aligned_cols=24 Identities=33% Similarity=0.789 Sum_probs=20.6
Q ss_pred EEEEEEECCCC------HHHHHHEEEEEEE
Q ss_conf 78999818875------2244111122321
Q gi|254780389|r 13 IRFLKFNGEGG------YSKYYRNFIISCR 36 (45)
Q Consensus 13 irflkfngegg------yskyyrnfiiscr 36 (45)
--|||||+..| |.--||...|||.
T Consensus 90 pVfLK~N~~tg~~yi~~y~G~~rGVLiscq 119 (139)
T 2q22_A 90 PVYIKLNGKNGLCYLDSYAGHHRGVLVSCQ 119 (139)
T ss_dssp SEEEEEETTTCCEEEEECCSCCBEEEEEEE
T ss_pred CEEEEECCCCCCEEEEECCCCCCEEEEEEE
T ss_conf 779984588886899723886406999854
No 2
>>1omw_A G-protein coupled receptor kinase 2; WD-40 repeat, transferase; 2.50A {Bos taurus} (A:187-274,A:488-513)
Probab=13.08 E-value=70 Score=15.79 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=18.7
Q ss_pred CCCEEEEEEECCCCHHHHHHEEE
Q ss_conf 68478999818875224411112
Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYRNFI 32 (45)
Q Consensus 10 mgnirflkfngeggyskyyrnfi 32 (45)
+++.+.++.-|+|+|++-|+-.-
T Consensus 2 l~~Y~i~~~IG~G~FG~Vyka~~ 24 (114)
T 1omw_A 2 MNDFSVHRIIGRGGFGEVYGCRK 24 (114)
T ss_dssp STTEEEEEEEEECSSCEEEEEEE
T ss_pred HHHEEEEEEEECCCCEEEEEEEE
T ss_conf 68907755996177839999999
No 3
>>1m93_C Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} (C:)
Probab=12.25 E-value=1.4e+02 Score=14.34 Aligned_cols=15 Identities=47% Similarity=0.862 Sum_probs=9.9
Q ss_pred CCCEEE---CCCCCEEEE
Q ss_conf 864354---266847899
Q gi|254780389|r 2 MHPFIF---DGMGNIRFL 16 (45)
Q Consensus 2 mhpfif---dgmgnirfl 16 (45)
-|||+| |--|+|-|+
T Consensus 15 DhPFlF~I~~~t~~ILF~ 32 (41)
T 1m93_C 15 DHPFIYVIRHVDGKILFV 32 (41)
T ss_dssp CSCEEEEEEETTSCEEEE
T ss_pred CCCEEEEEEECCCCEEEE
T ss_conf 999899999599849998
No 4
>>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} (A:1-23,A:165-177)
Probab=10.58 E-value=1.1e+02 Score=14.80 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=10.5
Q ss_pred CCEEEEEEECCCC
Q ss_conf 8478999818875
Q gi|254780389|r 11 GNIRFLKFNGEGG 23 (45)
Q Consensus 11 gnirflkfngegg 23 (45)
-|..|+.+||+|=
T Consensus 5 tNTDFl~YnGdGF 17 (36)
T 1v2b_A 5 TDTDFQTYNGDGF 17 (36)
T ss_dssp --CCEEEEECSSE
T ss_pred CCCCCCCCCCCCE
T ss_conf 4568633147976
No 5
>>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP- binding, cell division, disease mutation, kinase, nucleotide-binding; 3.00A {Homo sapiens} (A:1-101)
Probab=9.20 E-value=1.3e+02 Score=14.45 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.1
Q ss_pred CCCEEEEEEECCCCHHHHHHEE
Q ss_conf 6847899981887522441111
Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYRNF 31 (45)
Q Consensus 10 mgnirflkfngeggyskyyrnf 31 (45)
.++-+.++.-|+|+|++-|+-.
T Consensus 8 ~~~y~~~~~iG~G~fg~Vy~a~ 29 (101)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKAR 29 (101)
T ss_dssp --CCEEEEEECCSSSCCEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEEE
T ss_conf 5662783898227684999999
No 6
>>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* (A:1-96)
Probab=8.42 E-value=2e+02 Score=13.52 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=22.0
Q ss_pred CCCCEEEEEEECCCCHHHHHHEEEEEE
Q ss_conf 668478999818875224411112232
Q gi|254780389|r 9 GMGNIRFLKFNGEGGYSKYYRNFIISC 35 (45)
Q Consensus 9 gmgnirflkfngeggyskyyrnfiisc 35 (45)
...+++.++.-|+|+|.+-|+-...+-
T Consensus 10 ~~~~~~~~~~iG~G~fG~Vy~~~~~~~ 36 (96)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNH 36 (96)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECT
T ss_pred CHHHEEEEEEEEECCCEEEEEEEECCC
T ss_conf 689979701995366809999998578
No 7
>>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, alternative splicing, ATP-binding, cell cycle, disease mutation; 3.00A {Homo sapiens} PDB: 3i6w_A (A:126-220)
Probab=8.31 E-value=1.3e+02 Score=14.48 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=19.1
Q ss_pred CCCEEEEEEECCCCHHHHHHEEEE
Q ss_conf 684789998188752244111122
Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYRNFII 33 (45)
Q Consensus 10 mgnirflkfngeggyskyyrnfii 33 (45)
.++-++++.-|+|+|++-|+-.-.
T Consensus 9 ~~~Y~~~~~lG~G~fg~Vy~~~~~ 32 (95)
T 3i6u_A 9 RDEYIMSKTLGSGACGEVKLAFER 32 (95)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEET
T ss_pred CCCEEEEEEEECCCCEEEEEEEEC
T ss_conf 181899689921768399999999
No 8
>>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, SGC, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} (A:1-95)
Probab=7.92 E-value=1.3e+02 Score=14.34 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=20.4
Q ss_pred CCCCCEEEEEEECCCCHHHHHHEEE
Q ss_conf 2668478999818875224411112
Q gi|254780389|r 8 DGMGNIRFLKFNGEGGYSKYYRNFI 32 (45)
Q Consensus 8 dgmgnirflkfngeggyskyyrnfi 32 (45)
..+.++.+.+.-|+|+|++-|+...
T Consensus 10 ~~~~~~~~~~~iG~G~fG~Vy~~~~ 34 (95)
T 3g2f_A 10 LDLDNLKLLELIGRGRYGAVYKGSL 34 (95)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEE
T ss_pred CCHHHEEEEEEEEECCCEEEEEEEE
T ss_conf 9779908988984088879999999
No 9
>>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} (A:1-103)
Probab=7.68 E-value=1.8e+02 Score=13.74 Aligned_cols=29 Identities=24% Similarity=0.052 Sum_probs=22.1
Q ss_pred CEEECCCCCEEEEEEECCCCHHHHHHEEE
Q ss_conf 43542668478999818875224411112
Q gi|254780389|r 4 PFIFDGMGNIRFLKFNGEGGYSKYYRNFI 32 (45)
Q Consensus 4 pfifdgmgnirflkfngeggyskyyrnfi 32 (45)
..-++--++.+.++.-|+|+|++-|+-.-
T Consensus 4 ~~~~~~~~rY~i~~~iG~G~fg~Vy~a~d 32 (103)
T 2i6l_A 4 IHGFDLGSRYMDLKPLGCGGNGLVFSAVD 32 (103)
T ss_dssp --CEEETTTEEEEEECC-----CEEEEEE
T ss_pred CCCEEECCCEEEEEEEECCCCEEEEEEEE
T ss_conf 57888678279957953174819999999
No 10
>>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} (A:38-131)
Probab=7.35 E-value=1.7e+02 Score=13.84 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCEEEEEEECCCCHHHHHHEEEEE
Q ss_conf 6847899981887522441111223
Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYRNFIIS 34 (45)
Q Consensus 10 mgnirflkfngeggyskyyrnfiis 34 (45)
..+.+.++.-|+|+|++-|+-...+
T Consensus 7 ~~~y~~~~~lG~G~FG~Vy~~~~~~ 31 (94)
T 1rjb_A 7 RENLEFGKVLGSGAFGKVMNATAYG 31 (94)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEES
T ss_pred HHHEEEEEEEEECCCEEEEEEEECC
T ss_conf 8990871199316883999999867
Done!