Query         gi|254780389|ref|YP_003064802.1| hypothetical protein CLIBASIA_01370 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 30 09:40:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780389.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2q22_A Uncharacterized protein  50.1     6.9 0.00029   20.1   2.1   24   13-36     90-119 (139)
  2 3g2f_A Bone morphogenetic prot   9.8      71   0.003   15.0   0.8   22   10-31     12-33  (336)
  3 1m93_C Serine proteinase inhib   8.0      94  0.0039   14.4   0.7   15    2-16     15-32  (41)
  4 3kex_A Receptor tyrosine-prote   7.4 1.1E+02  0.0048   13.9   1.0   25    6-31      9-33  (325)
  5 3lxl_A Tyrosine-protein kinase   7.2      94  0.0039   14.4   0.4   27    4-31     17-43  (327)
  6 3hlu_A Uncharacterized protein   6.5 1.2E+02  0.0052   13.8   0.8   20   16-35     34-53  (96)
  7 2biw_A Apocarotenoid-cleaving    6.4 1.2E+02  0.0052   13.8   0.7   26    7-34     69-94  (490)
  8 2qlu_A Activin receptor type I   5.0 1.7E+02  0.0073   13.0   0.8   22   10-31     14-35  (314)
  9 2wqm_A Serine/threonine-protei   5.0 1.8E+02  0.0074   13.0   0.8   25    8-32     29-53  (310)
 10 1hle_B Horse leukocyte elastas   5.0 1.7E+02  0.0072   13.0   0.7   15    2-16      7-25  (31)

No 1  
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1
Probab=50.10  E-value=6.9  Score=20.15  Aligned_cols=24  Identities=33%  Similarity=0.789  Sum_probs=20.0

Q ss_pred             EEEEEEECCCC------HHHHHHEEEEEEE
Q ss_conf             78999818875------2244111122321
Q gi|254780389|r   13 IRFLKFNGEGG------YSKYYRNFIISCR   36 (45)
Q Consensus        13 irflkfngegg------yskyyrnfiiscr   36 (45)
                      --|||+|...|      |.--+|...|||.
T Consensus        90 ~VfLK~Nqktg~~~ir~e~GlgrGVLiscq  119 (139)
T 2q22_A           90 PVYIKLNGKNGLCYLDSYAGHHRGVLVSCQ  119 (139)
T ss_dssp             SEEEEEETTTCCEEEEECCSCCBEEEEEEE
T ss_pred             CEEEEECCCCCCEEEEECCCCCCEEEEEEE
T ss_conf             779984487776898613886626899743


No 2  
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, SGC, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=9.85  E-value=71  Score=14.99  Aligned_cols=22  Identities=27%  Similarity=0.697  Sum_probs=19.2

Q ss_pred             CCCEEEEEEECCCCHHHHHHEE
Q ss_conf             6847899981887522441111
Q gi|254780389|r   10 MGNIRFLKFNGEGGYSKYYRNF   31 (45)
Q Consensus        10 mgnirflkfngeggyskyyrnf   31 (45)
                      +.++++++.-|+|+|+.-|+..
T Consensus        12 ~~~~~~~~~lG~G~fG~Vy~~~   33 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGS   33 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEE
T ss_pred             HHHCEEEEEEEECCCEEEEEEE
T ss_conf             7991898898408886999999


No 3  
>1m93_C Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_B 1f0c_B
Probab=7.96  E-value=94  Score=14.37  Aligned_cols=15  Identities=47%  Similarity=0.862  Sum_probs=8.5

Q ss_pred             CCCEEE---CCCCCEEEE
Q ss_conf             864354---266847899
Q gi|254780389|r    2 MHPFIF---DGMGNIRFL   16 (45)
Q Consensus         2 mhpfif---dgmgnirfl   16 (45)
                      -|||+|   |--|.|-|+
T Consensus        15 dhPFlF~Ir~~t~~iLF~   32 (41)
T 1m93_C           15 DHPFIYVIRHVDGKILFV   32 (41)
T ss_dssp             CSCEEEEEEETTSCEEEE
T ss_pred             CCCEEEEEEECCCCEEEE
T ss_conf             999999999389969998


No 4  
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=7.44  E-value=1.1e+02  Score=13.94  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=19.0

Q ss_pred             EECCCCCEEEEEEECCCCHHHHHHEE
Q ss_conf             54266847899981887522441111
Q gi|254780389|r    6 IFDGMGNIRFLKFNGEGGYSKYYRNF   31 (45)
Q Consensus         6 ifdgmgnirflkfngeggyskyyrnf   31 (45)
                      ||.- -.++.++.-|+|+|++-|+-.
T Consensus         9 ~~~~-~~~~~~~~lG~G~fG~Vy~~~   33 (325)
T 3kex_A            9 IFKE-TELRKLKVLGSGVFGTVHKGV   33 (325)
T ss_dssp             BCCT-TTEEEEEEEECCSSCEEEEEE
T ss_pred             CCCH-HHCEECCEEEECCCEEEEEEE
T ss_conf             2999-998886298218894999999


No 5  
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 1yvj_A*
Probab=7.19  E-value=94  Score=14.37  Aligned_cols=27  Identities=19%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             CEEECCCCCEEEEEEECCCCHHHHHHEE
Q ss_conf             4354266847899981887522441111
Q gi|254780389|r    4 PFIFDGMGNIRFLKFNGEGGYSKYYRNF   31 (45)
Q Consensus         4 pfifdgmgnirflkfngeggyskyyrnf   31 (45)
                      |.+|+. .+.+|++--|+|+|+.-|+-.
T Consensus        17 p~~f~~-~~~~~~~~iG~G~fG~Vy~~~   43 (327)
T 3lxl_A           17 PTIFEE-RHLKYISQLGKGNFGSVELCR   43 (327)
T ss_dssp             CCBCCG-GGEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCCH-HHCEEEEEEECCCCEEEEEEE
T ss_conf             885476-361898796137682999999


No 6  
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protein structure initiative; 2.65A {Eubacterium ventriosum atcc 27560}
Probab=6.50  E-value=1.2e+02  Score=13.77  Aligned_cols=20  Identities=15%  Similarity=0.296  Sum_probs=14.3

Q ss_pred             EEEECCCCHHHHHHEEEEEE
Q ss_conf             99818875224411112232
Q gi|254780389|r   16 LKFNGEGGYSKYYRNFIISC   35 (45)
Q Consensus        16 lkfngeggyskyyrnfiisc   35 (45)
                      --++|+||||+--+.-+...
T Consensus        34 Ti~~g~GgYs~~~~~vl~~V   53 (96)
T 3hlu_A           34 TMLQAVGAYKNNETEVIMCV   53 (96)
T ss_dssp             EEEECEESSSSSCCEEEEEE
T ss_pred             EEEEEEEEECCCCCEEEEEE
T ss_conf             99986981369961999999


No 7  
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal formation, oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=6.44  E-value=1.2e+02  Score=13.75  Aligned_cols=26  Identities=31%  Similarity=0.650  Sum_probs=17.5

Q ss_pred             ECCCCCEEEEEEECCCCHHHHHHEEEEE
Q ss_conf             4266847899981887522441111223
Q gi|254780389|r    7 FDGMGNIRFLKFNGEGGYSKYYRNFIIS   34 (45)
Q Consensus         7 fdgmgnirflkfngeggyskyyrnfiis   34 (45)
                      |||.|-+.-+.|.++|-  -.|+|=.+.
T Consensus        69 FDGdGmv~~~~f~~~g~--v~y~~R~v~   94 (490)
T 2biw_A           69 FDGDGMVTAFKFPGDGR--VHFQSKFVR   94 (490)
T ss_dssp             GGSCBEEEEEEECSSSC--CEEEEEECC
T ss_pred             CCCCCEEEEEEECCCCE--EEEEEEEEE
T ss_conf             97898699999899986--999965871


No 8  
>2qlu_A Activin receptor type IIB; TGF-beta, ACTRIIB, serine/threonine kinase receptor, alternative splicing, ATP-binding, disease mutation, glycoprotein; HET: ADE; 2.00A {Homo sapiens}
Probab=5.00  E-value=1.7e+02  Score=13.00  Aligned_cols=22  Identities=14%  Similarity=0.472  Sum_probs=18.3

Q ss_pred             CCCEEEEEEECCCCHHHHHHEE
Q ss_conf             6847899981887522441111
Q gi|254780389|r   10 MGNIRFLKFNGEGGYSKYYRNF   31 (45)
Q Consensus        10 mgnirflkfngeggyskyyrnf   31 (45)
                      -|+.++++.-|+|+|+.-|+..
T Consensus        14 ~~~~~l~~~iG~G~fG~Vyk~~   35 (314)
T 2qlu_A           14 RGSLQLLEIKARGRFGCVWKAQ   35 (314)
T ss_dssp             -CCCEEEEEEECCSSSEEEEEE
T ss_pred             CCCEEEEEEEEECCCEEEEEEE
T ss_conf             6865999998528881999999


No 9  
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=5.00  E-value=1.8e+02  Score=12.97  Aligned_cols=25  Identities=32%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             CCCCCEEEEEEECCCCHHHHHHEEE
Q ss_conf             2668478999818875224411112
Q gi|254780389|r    8 DGMGNIRFLKFNGEGGYSKYYRNFI   32 (45)
Q Consensus         8 dgmgnirflkfngeggyskyyrnfi   32 (45)
                      ..++|-++++.-|+|+|+.-|+-.-
T Consensus        29 ~~l~~y~i~~~iG~G~fg~Vy~~~~   53 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAAC   53 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEE
T ss_pred             CCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf             8477868888983287829999999


No 10 
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=4.97  E-value=1.7e+02  Score=13.02  Aligned_cols=15  Identities=60%  Similarity=0.848  Sum_probs=8.3

Q ss_pred             CCCEEEC----CCCCEEEE
Q ss_conf             8643542----66847899
Q gi|254780389|r    2 MHPFIFD----GMGNIRFL   16 (45)
Q Consensus         2 mhpfifd----gmgnirfl   16 (45)
                      -|||+|-    ..|.|-|+
T Consensus         7 d~PFlf~I~~~~t~~iLF~   25 (31)
T 1hle_B            7 DHPFIFFIRHNPSANILFL   25 (31)
T ss_dssp             CSCEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEE
T ss_conf             8999999998999979999


Done!