Query gi|254780389|ref|YP_003064802.1| hypothetical protein CLIBASIA_01370 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 30 09:40:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780389.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2q22_A Uncharacterized protein 50.1 6.9 0.00029 20.1 2.1 24 13-36 90-119 (139) 2 3g2f_A Bone morphogenetic prot 9.8 71 0.003 15.0 0.8 22 10-31 12-33 (336) 3 1m93_C Serine proteinase inhib 8.0 94 0.0039 14.4 0.7 15 2-16 15-32 (41) 4 3kex_A Receptor tyrosine-prote 7.4 1.1E+02 0.0048 13.9 1.0 25 6-31 9-33 (325) 5 3lxl_A Tyrosine-protein kinase 7.2 94 0.0039 14.4 0.4 27 4-31 17-43 (327) 6 3hlu_A Uncharacterized protein 6.5 1.2E+02 0.0052 13.8 0.8 20 16-35 34-53 (96) 7 2biw_A Apocarotenoid-cleaving 6.4 1.2E+02 0.0052 13.8 0.7 26 7-34 69-94 (490) 8 2qlu_A Activin receptor type I 5.0 1.7E+02 0.0073 13.0 0.8 22 10-31 14-35 (314) 9 2wqm_A Serine/threonine-protei 5.0 1.8E+02 0.0074 13.0 0.8 25 8-32 29-53 (310) 10 1hle_B Horse leukocyte elastas 5.0 1.7E+02 0.0072 13.0 0.7 15 2-16 7-25 (31) No 1 >2q22_A Uncharacterized protein; YP_323524.1, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1 Probab=50.10 E-value=6.9 Score=20.15 Aligned_cols=24 Identities=33% Similarity=0.789 Sum_probs=20.0 Q ss_pred EEEEEEECCCC------HHHHHHEEEEEEE Q ss_conf 78999818875------2244111122321 Q gi|254780389|r 13 IRFLKFNGEGG------YSKYYRNFIISCR 36 (45) Q Consensus 13 irflkfngegg------yskyyrnfiiscr 36 (45) --|||+|...| |.--+|...|||. T Consensus 90 ~VfLK~Nqktg~~~ir~e~GlgrGVLiscq 119 (139) T 2q22_A 90 PVYIKLNGKNGLCYLDSYAGHHRGVLVSCQ 119 (139) T ss_dssp SEEEEEETTTCCEEEEECCSCCBEEEEEEE T ss_pred CEEEEECCCCCCEEEEECCCCCCEEEEEEE T ss_conf 779984487776898613886626899743 No 2 >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, SGC, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Probab=9.85 E-value=71 Score=14.99 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=19.2 Q ss_pred CCCEEEEEEECCCCHHHHHHEE Q ss_conf 6847899981887522441111 Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYRNF 31 (45) Q Consensus 10 mgnirflkfngeggyskyyrnf 31 (45) +.++++++.-|+|+|+.-|+.. T Consensus 12 ~~~~~~~~~lG~G~fG~Vy~~~ 33 (336) T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGS 33 (336) T ss_dssp TTSEEEEEEEEECSSEEEEEEE T ss_pred HHHCEEEEEEEECCCEEEEEEE T ss_conf 7991898898408886999999 No 3 >1m93_C Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_B 1f0c_B Probab=7.96 E-value=94 Score=14.37 Aligned_cols=15 Identities=47% Similarity=0.862 Sum_probs=8.5 Q ss_pred CCCEEE---CCCCCEEEE Q ss_conf 864354---266847899 Q gi|254780389|r 2 MHPFIF---DGMGNIRFL 16 (45) Q Consensus 2 mhpfif---dgmgnirfl 16 (45) -|||+| |--|.|-|+ T Consensus 15 dhPFlF~Ir~~t~~iLF~ 32 (41) T 1m93_C 15 DHPFIYVIRHVDGKILFV 32 (41) T ss_dssp CSCEEEEEEETTSCEEEE T ss_pred CCCEEEEEEECCCCEEEE T ss_conf 999999999389969998 No 4 >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Probab=7.44 E-value=1.1e+02 Score=13.94 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=19.0 Q ss_pred EECCCCCEEEEEEECCCCHHHHHHEE Q ss_conf 54266847899981887522441111 Q gi|254780389|r 6 IFDGMGNIRFLKFNGEGGYSKYYRNF 31 (45) Q Consensus 6 ifdgmgnirflkfngeggyskyyrnf 31 (45) ||.- -.++.++.-|+|+|++-|+-. T Consensus 9 ~~~~-~~~~~~~~lG~G~fG~Vy~~~ 33 (325) T 3kex_A 9 IFKE-TELRKLKVLGSGVFGTVHKGV 33 (325) T ss_dssp BCCT-TTEEEEEEEECCSSCEEEEEE T ss_pred CCCH-HHCEECCEEEECCCEEEEEEE T ss_conf 2999-998886298218894999999 No 5 >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 1yvj_A* Probab=7.19 E-value=94 Score=14.37 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=21.0 Q ss_pred CEEECCCCCEEEEEEECCCCHHHHHHEE Q ss_conf 4354266847899981887522441111 Q gi|254780389|r 4 PFIFDGMGNIRFLKFNGEGGYSKYYRNF 31 (45) Q Consensus 4 pfifdgmgnirflkfngeggyskyyrnf 31 (45) |.+|+. .+.+|++--|+|+|+.-|+-. T Consensus 17 p~~f~~-~~~~~~~~iG~G~fG~Vy~~~ 43 (327) T 3lxl_A 17 PTIFEE-RHLKYISQLGKGNFGSVELCR 43 (327) T ss_dssp CCBCCG-GGEEEEEEEEEETTEEEEEEE T ss_pred CCCCCH-HHCEEEEEEECCCCEEEEEEE T ss_conf 885476-361898796137682999999 No 6 >3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protein structure initiative; 2.65A {Eubacterium ventriosum atcc 27560} Probab=6.50 E-value=1.2e+02 Score=13.77 Aligned_cols=20 Identities=15% Similarity=0.296 Sum_probs=14.3 Q ss_pred EEEECCCCHHHHHHEEEEEE Q ss_conf 99818875224411112232 Q gi|254780389|r 16 LKFNGEGGYSKYYRNFIISC 35 (45) Q Consensus 16 lkfngeggyskyyrnfiisc 35 (45) --++|+||||+--+.-+... T Consensus 34 Ti~~g~GgYs~~~~~vl~~V 53 (96) T 3hlu_A 34 TMLQAVGAYKNNETEVIMCV 53 (96) T ss_dssp EEEECEESSSSSCCEEEEEE T ss_pred EEEEEEEEECCCCCEEEEEE T ss_conf 99986981369961999999 No 7 >2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal formation, oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Probab=6.44 E-value=1.2e+02 Score=13.75 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=17.5 Q ss_pred ECCCCCEEEEEEECCCCHHHHHHEEEEE Q ss_conf 4266847899981887522441111223 Q gi|254780389|r 7 FDGMGNIRFLKFNGEGGYSKYYRNFIIS 34 (45) Q Consensus 7 fdgmgnirflkfngeggyskyyrnfiis 34 (45) |||.|-+.-+.|.++|- -.|+|=.+. T Consensus 69 FDGdGmv~~~~f~~~g~--v~y~~R~v~ 94 (490) T 2biw_A 69 FDGDGMVTAFKFPGDGR--VHFQSKFVR 94 (490) T ss_dssp GGSCBEEEEEEECSSSC--CEEEEEECC T ss_pred CCCCCEEEEEEECCCCE--EEEEEEEEE T ss_conf 97898699999899986--999965871 No 8 >2qlu_A Activin receptor type IIB; TGF-beta, ACTRIIB, serine/threonine kinase receptor, alternative splicing, ATP-binding, disease mutation, glycoprotein; HET: ADE; 2.00A {Homo sapiens} Probab=5.00 E-value=1.7e+02 Score=13.00 Aligned_cols=22 Identities=14% Similarity=0.472 Sum_probs=18.3 Q ss_pred CCCEEEEEEECCCCHHHHHHEE Q ss_conf 6847899981887522441111 Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYRNF 31 (45) Q Consensus 10 mgnirflkfngeggyskyyrnf 31 (45) -|+.++++.-|+|+|+.-|+.. T Consensus 14 ~~~~~l~~~iG~G~fG~Vyk~~ 35 (314) T 2qlu_A 14 RGSLQLLEIKARGRFGCVWKAQ 35 (314) T ss_dssp -CCCEEEEEEECCSSSEEEEEE T ss_pred CCCEEEEEEEEECCCEEEEEEE T ss_conf 6865999998528881999999 No 9 >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Probab=5.00 E-value=1.8e+02 Score=12.97 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=20.1 Q ss_pred CCCCCEEEEEEECCCCHHHHHHEEE Q ss_conf 2668478999818875224411112 Q gi|254780389|r 8 DGMGNIRFLKFNGEGGYSKYYRNFI 32 (45) Q Consensus 8 dgmgnirflkfngeggyskyyrnfi 32 (45) ..++|-++++.-|+|+|+.-|+-.- T Consensus 29 ~~l~~y~i~~~iG~G~fg~Vy~~~~ 53 (310) T 2wqm_A 29 NTLANFRIEKKIGRGQFSEVYRAAC 53 (310) T ss_dssp SSGGGEEEEEEEECC--CEEEEEEE T ss_pred CCCCCCEEEEEEECCCCCEEEEEEE T ss_conf 8477868888983287829999999 No 10 >1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1 Probab=4.97 E-value=1.7e+02 Score=13.02 Aligned_cols=15 Identities=60% Similarity=0.848 Sum_probs=8.3 Q ss_pred CCCEEEC----CCCCEEEE Q ss_conf 8643542----66847899 Q gi|254780389|r 2 MHPFIFD----GMGNIRFL 16 (45) Q Consensus 2 mhpfifd----gmgnirfl 16 (45) -|||+|- ..|.|-|+ T Consensus 7 d~PFlf~I~~~~t~~iLF~ 25 (31) T 1hle_B 7 DHPFIFFIRHNPSANILFL 25 (31) T ss_dssp CSCEEEEEEETTTTEEEEE T ss_pred CCCEEEEEEECCCCCEEEE T ss_conf 8999999998999979999 Done!