Query gi|254780389|ref|YP_003064802.1| hypothetical protein CLIBASIA_01370 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 03:58:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780389.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2q22a1 d.365.1.1 (A:8-138) Un 43.1 6 0.00043 19.3 2.1 24 13-36 82-111 (131) 2 d1fmka3 d.144.1.7 (A:249-533) 7.0 86 0.0062 13.3 1.4 28 10-37 16-43 (285) 3 d1t4ha_ d.144.1.7 (A:) Protein 6.7 45 0.0033 14.8 -0.2 19 14-32 9-30 (270) 4 d1fvra_ d.144.1.7 (A:) Tie2 ki 5.2 1E+02 0.0073 13.0 0.9 29 3-33 4-32 (309) 5 d1kf6b2 d.15.4.2 (B:1-105) Fum 4.6 1.3E+02 0.0098 12.4 1.5 24 12-35 7-30 (105) 6 d1omwa3 d.144.1.7 (A:186-549) 4.4 1.2E+02 0.0088 12.6 0.8 22 10-31 3-24 (364) 7 d1u46a_ d.144.1.7 (A:) Activat 4.1 1.5E+02 0.011 12.2 2.3 24 9-32 6-29 (273) 8 d2io8a3 d.142.1.8 (A:201-378,A 4.1 1.5E+02 0.011 12.2 2.3 20 5-25 119-138 (297) 9 d1wxxa1 b.122.1.9 (A:1-64) Hyp 4.1 1.2E+02 0.0088 12.6 0.6 18 2-23 16-33 (64) 10 d1byga_ d.144.1.7 (A:) Carboxy 3.9 1.2E+02 0.009 12.5 0.6 20 10-29 6-25 (262) No 1 >d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]} Probab=43.13 E-value=6 Score=19.26 Aligned_cols=24 Identities=33% Similarity=0.789 Sum_probs=20.0 Q ss_pred EEEEEEECCCC------HHHHHHEEEEEEE Q ss_conf 78999818875------2244111122321 Q gi|254780389|r 13 IRFLKFNGEGG------YSKYYRNFIISCR 36 (45) Q Consensus 13 irflkfngegg------yskyyrnfiiscr 36 (45) --|||+|...| |.--+|...|||. T Consensus 82 ~VfLK~NqktG~~~ir~e~Glg~GVLitcq 111 (131) T d2q22a1 82 PVYIKLNGKNGLCYLDSYAGHHRGVLVSCQ 111 (131) T ss_dssp SEEEEEETTTCCEEEEECCSCCBEEEEEEE T ss_pred CEEEEECCCCCCEEEEECCCCCEEEEEEEE T ss_conf 679984488886899833885307999854 No 2 >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Probab=7.01 E-value=86 Score=13.35 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=21.7 Q ss_pred CCCEEEEEEECCCCHHHHHHEEEEEEEE Q ss_conf 6847899981887522441111223212 Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYRNFIISCRT 37 (45) Q Consensus 10 mgnirflkfngeggyskyyrnfiiscrt 37 (45) ..++++.+--|+|+|++-|+-.....+. T Consensus 16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~ 43 (285) T d1fmka3 16 RESLRLEVKLGQGCFGEVWMGTWNGTTR 43 (285) T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEE T ss_pred HHHEEEEEEEEECCCEEEEEEEECCCCE T ss_conf 7997984699307980999999999999 No 3 >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.67 E-value=45 Score=14.78 Aligned_cols=19 Identities=42% Similarity=0.884 Sum_probs=13.5 Q ss_pred EEEEE---ECCCCHHHHHHEEE Q ss_conf 89998---18875224411112 Q gi|254780389|r 14 RFLKF---NGEGGYSKYYRNFI 32 (45) Q Consensus 14 rflkf---ngeggyskyyrnfi 32 (45) |+++| -|+|+|+.-|+-.- T Consensus 9 ry~~~~~~iG~G~fg~Vy~~~~ 30 (270) T d1t4ha_ 9 RFLKFDIEIGRGSFKTVYKGLD 30 (270) T ss_dssp CEEEEEEEEEECSSEEEEEEEE T ss_pred CEEEEEEEEECCCCCEEEEEEE T ss_conf 7788516970082849999999 No 4 >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Probab=5.23 E-value=1e+02 Score=12.99 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=22.6 Q ss_pred CCEEECCCCCEEEEEEECCCCHHHHHHEEEE Q ss_conf 6435426684789998188752244111122 Q gi|254780389|r 3 HPFIFDGMGNIRFLKFNGEGGYSKYYRNFII 33 (45) Q Consensus 3 hpfifdgmgnirflkfngeggyskyyrnfii 33 (45) +|+| .+.++++.+-=|+|+|++-|+.... T Consensus 4 ~~~i--~~~~~~~~~~iG~G~fg~Vy~~~~~ 32 (309) T d1fvra_ 4 YPVL--DWNDIKFQDVIGEGNFGQVLKARIK 32 (309) T ss_dssp SSBC--CGGGCEEEEEEECGGGCEEEEEEEE T ss_pred CCCC--CHHHCEEEEEEEECCCCEEEEEEEC T ss_conf 9966--8799688779820788289999998 No 5 >d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=4.56 E-value=1.3e+02 Score=12.35 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=17.4 Q ss_pred CEEEEEEECCCCHHHHHHEEEEEE Q ss_conf 478999818875224411112232 Q gi|254780389|r 12 NIRFLKFNGEGGYSKYYRNFIISC 35 (45) Q Consensus 12 nirflkfngeggyskyyrnfiisc 35 (45) .++..+||.|.+.+.||..|-+.- T Consensus 7 ~~~i~R~dp~~~~~~~~~~y~v~~ 30 (105) T d1kf6b2 7 KIEVVRYNPEVDTAPHSAFYEVPY 30 (105) T ss_dssp EEEEEECCTTTCSSCEEEEEEEEE T ss_pred EEEEEEECCCCCCCCEEEEEEEEC T ss_conf 999999898989997059999806 No 6 >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Probab=4.35 E-value=1.2e+02 Score=12.57 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=16.8 Q ss_pred CCCEEEEEEECCCCHHHHHHEE Q ss_conf 6847899981887522441111 Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYRNF 31 (45) Q Consensus 10 mgnirflkfngeggyskyyrnf 31 (45) |.+-++++.-|+|+|++-|+-. T Consensus 3 lddy~i~~~lG~G~fg~Vy~~~ 24 (364) T d1omwa3 3 MNDFSVHRIIGRGGFGEVYGCR 24 (364) T ss_dssp STTEEEEEEEEECSSCEEEEEE T ss_pred HHHCEEEEEEECCCCEEEEEEE T ss_conf 7768510188428890999999 No 7 >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Probab=4.12 E-value=1.5e+02 Score=12.17 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=19.6 Q ss_pred CCCCEEEEEEECCCCHHHHHHEEE Q ss_conf 668478999818875224411112 Q gi|254780389|r 9 GMGNIRFLKFNGEGGYSKYYRNFI 32 (45) Q Consensus 9 gmgnirflkfngeggyskyyrnfi 32 (45) +..+.++++-=|+|+++.-|+-.. T Consensus 6 ~~~d~~~~~~iG~G~fg~Vy~~~~ 29 (273) T d1u46a_ 6 GEKDLRLLEKLGDGSFGVVRRGEW 29 (273) T ss_dssp CGGGEEEEEECC----CCCEEEEE T ss_pred CHHHEEEEEEEECCCCEEEEEEEE T ss_conf 648919978980388839999999 No 8 >d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]} Probab=4.09 E-value=1.5e+02 Score=12.16 Aligned_cols=20 Identities=20% Similarity=0.572 Sum_probs=14.5 Q ss_pred EEECCCCCEEEEEEECCCCHH Q ss_conf 354266847899981887522 Q gi|254780389|r 5 FIFDGMGNIRFLKFNGEGGYS 25 (45) Q Consensus 5 fifdgmgnirflkfngeggys 25 (45) |.+||-| ++.|.||.+---+ T Consensus 119 fa~dg~g-~KllEyNADTPT~ 138 (297) T d2io8a3 119 FCMDERG-LKVYEYNADSASC 138 (297) T ss_dssp EEEETTE-EEEEEEECSSCCC T ss_pred EEECCCC-CEEEEECCCCCHH T ss_conf 9986998-6699953899537 No 9 >d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=4.08 E-value=1.2e+02 Score=12.58 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=10.9 Q ss_pred CCCEEECCCCCEEEEEEECCCC Q ss_conf 8643542668478999818875 Q gi|254780389|r 2 MHPFIFDGMGNIRFLKFNGEGG 23 (45) Q Consensus 2 mhpfifdgmgnirflkfngegg 23 (45) -||.||++. | .+-.+++| T Consensus 16 gHPWVf~~~--i--~~~~~~~g 33 (64) T d1wxxa1 16 RHLWVFRRD--V--VSGPETPG 33 (64) T ss_dssp TCCEECGGG--E--EECCSSCE T ss_pred CCCCCHHHH--H--HCCCCCCC T ss_conf 896101224--4--12689998 No 10 >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Probab=3.92 E-value=1.2e+02 Score=12.54 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=0.0 Q ss_pred CCCEEEEEEECCCCHHHHHH Q ss_conf 68478999818875224411 Q gi|254780389|r 10 MGNIRFLKFNGEGGYSKYYR 29 (45) Q Consensus 10 mgnirflkfngeggyskyyr 29 (45) |.++++.+-=|+|+|+.-|+ T Consensus 6 ~~~~~~~~~lG~G~fg~Vy~ 25 (262) T d1byga_ 6 MKELKLLQTIGKGEFGDVML 25 (262) T ss_dssp GGGEEEEEEEEECSSCEEEE T ss_pred HHHEEEEEEEECCCCEEEEE T ss_conf 89948857982079808999 Done!