RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780389|ref|YP_003064802.1| hypothetical protein CLIBASIA_01370 [Candidatus Liberibacter asiaticus str. psy62] (45 letters) >gnl|CDD|149800 pfam08854, DUF1824, Domain of unknown function (DUF1824). This uncharacterized family of proteins are principally found in cyanobacteria. Length = 125 Score = 27.2 bits (61), Expect = 0.97 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%) Query: 15 FLKFNGEGG------YSKYYRNFIISC 35 FLK N + G + R +ISC Sbjct: 79 FLKANQKTGSIYIRIETGLGRGVLISC 105 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.338 0.153 0.503 Gapped Lambda K H 0.267 0.0592 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 786,939 Number of extensions: 31126 Number of successful extensions: 76 Number of sequences better than 10.0: 1 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 3 Length of query: 45 Length of database: 5,994,473 Length adjustment: 18 Effective length of query: 27 Effective length of database: 5,605,529 Effective search space: 151349283 Effective search space used: 151349283 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 50 (23.3 bits)