RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780389|ref|YP_003064802.1| hypothetical protein
CLIBASIA_01370 [Candidatus Liberibacter asiaticus str. psy62]
         (45 letters)



>gnl|CDD|149800 pfam08854, DUF1824, Domain of unknown function (DUF1824).  This
           uncharacterized family of proteins are principally found
           in cyanobacteria.
          Length = 125

 Score = 27.2 bits (61), Expect = 0.97
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)

Query: 15  FLKFNGEGG------YSKYYRNFIISC 35
           FLK N + G       +   R  +ISC
Sbjct: 79  FLKANQKTGSIYIRIETGLGRGVLISC 105


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.338    0.153    0.503 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 786,939
Number of extensions: 31126
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 3
Length of query: 45
Length of database: 5,994,473
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,605,529
Effective search space: 151349283
Effective search space used: 151349283
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.3 bits)