HHsearch alignment of GI: 254780390 and MMDB domain: 1wkj_A_
>1wkj_A (A:) Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=339.14 Aligned_cols=137 Identities=43% Similarity=0.769 Sum_probs=135.8
Q ss_pred CCEEEEEECCHHHHCCCHHHHHHHHHHCCCEEEEHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEECCCCCH
Q ss_conf 31023045523771898799999997255589210011269999999988851474210012210011157711116401
Q gi|254780390|r 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQAMISGPVFLQVLKGEEA 82 (140)
Q Consensus 3 ~e~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~fY~~~~~k~ff~~lv~~m~sGpv~alvl~g~na 82 (140)
||+||+||||||++++++|+|+++|.++||.|+++|++++|+++|++||.+|+|+|||++|++||+||||+||+|+|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~~~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~~~~f~~lv~~m~sgp~val~l~g~na 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CCEEEEEECCCHHCCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHEEECCCCEEEEEEECCCH
T ss_conf 95348998922322578999999999879999997721488899876558875210235321032369888899851530
Q ss_pred HHHHHHHCCCCCHHHCCCCCCCHHCCCCHHHEEEEECCCHHHHHHHHHHHCCHHHCC
Q ss_conf 789996618899777689970001011522100440699899999998726856506
Q gi|254780390|r 83 ISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLKTALEEISYWFARNEII 139 (140)
Q Consensus 83 V~~~R~l~Gptdp~~a~p~tiR~~fg~~~~~N~vH~Sds~e~a~rEi~~fF~~~ei~ 139 (140)
|.+||+++|||||++|.|+|||++||.+.++|++|||||+++|+||+++|||++|+|
T Consensus 81 v~~~r~l~Gptdp~~a~p~slR~~~g~~~~~N~vH~Sds~e~a~rEi~~fF~~~~~~ 137 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEELL 137 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGGCC
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCHHHHHHHHHHCCCHHHCC
T ss_conf 656765105689365999872776247877758467899999999999629855349