HHSEARCH alignment of GI: 254780390 and SCOP domain: d1u8wa_

Alignment
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00  E-value=0  Score=356.52  Aligned_cols=136  Identities=38%  Similarity=0.700  Sum_probs=133.9

Q ss_pred             CCEEEEEECCHHHHCCCHHHHHHHHHHCCCEEEEHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCEEEEECCCCCH
Q ss_conf             31023045523771898799999997255589210011269999999988851474210012210011157711116401
Q gi|254780390|r    3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQAMISGPVFLQVLKGEEA   82 (140)
Q Consensus         3 ~e~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~fY~~~~~k~ff~~lv~~m~sGpv~alvl~g~na   82 (140)
                      |||||+|||||||+++++|+|+++|+++||+|+++|++++|+++|++||.+|+|||||+.|++||+||||+||+|+|+||
T Consensus         1 ~E~Tl~iIKPDav~~~~~geIi~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~gk~ff~~lv~~m~sGPv~a~~l~g~~a   80 (149)
T d1u8wa_           1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV   80 (149)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CCEEEEEECCHHHHCCCHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCHH
T ss_conf             95358998920653468899999999859979675504088999999999870332243256540578743200026429


Q ss_pred             HHHHHHHCCCCCHHHCCCCCCCHHCCCCHHHEEEEECCCHHHHHHHHHHHCCHHHC
Q ss_conf             78999661889977768997000101152210044069989999999872685650
Q gi|254780390|r   83 ISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLKTALEEISYWFARNEI  138 (140)
Q Consensus        83 V~~~R~l~Gptdp~~a~p~tiR~~fg~~~~~N~vH~Sds~e~a~rEi~~fF~~~ei  138 (140)
                      |++||+++|||||++|.|+||||+||.+.++|++|||||+++|+||++||||+++|
T Consensus        81 V~~~R~l~Gptdp~~A~p~tIR~~fg~~~~~N~vH~Sds~e~A~rEi~~fFp~~~i  136 (149)
T d1u8wa_          81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPV  136 (149)
T ss_dssp             HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCC
T ss_conf             99999870468813279975000103664534067789989999999970891014


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]