RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780390|ref|YP_003064803.1| nucleoside diphosphate kinase
[Candidatus Liberibacter asiaticus str. psy62]
(140 letters)
>1xiq_A Nucleoside diphosphate kinase B; protein structure
initiative, structural genomics, SGPP, PSI; 3.05A
{Plasmodium falciparum 3D7} (A:)
Length = 157
Score = 156 bits (394), Expect = 1e-39
Identities = 51/139 (36%), Positives = 83/139 (59%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
+EK+F MIKPD V+R L+G+I+K E G ++A K + ++ Y D+PFF
Sbjct: 7 HHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFF 66
Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
LV + GPV V +G + + + R+++G+T+P + GTIR + + + +N IHGSD
Sbjct: 67 KNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSD 126
Query: 121 SLKTALEEISYWFARNEII 139
S+ +A +EI+ WF E+
Sbjct: 127 SVASANKEINIWFKAEELT 145
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP;
1.90A {Myxococcus xanthus} (R:)
Length = 144
Score = 155 bits (394), Expect = 2e-39
Identities = 69/137 (50%), Positives = 97/137 (70%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
IE+T S+IKPD +++ +IG I+ E+ GL VA + +++ QAE FY +HK RPFF +
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LVQ MISGPV L VL+GE A+ NR++MG T+P +A +GTIR + SI +N++HGSDSL
Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121
Query: 123 KTALEEISYWFARNEII 139
+ A EI+Y+F EI
Sbjct: 122 ENAKIEIAYFFRETEIH 138
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism,
apoptosis, transferase, structural genomics, structural
genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens}
(A:)
Length = 169
Score = 155 bits (393), Expect = 2e-39
Identities = 54/139 (38%), Positives = 84/139 (60%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
E+TF +KPD V+R L+G IV+ E G +VA K + + + Y ++RPF+
Sbjct: 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFY 78
Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
LV+ M SGPV V +G + + +R ++G T+P A GTIR + I +G+N IHGSD
Sbjct: 79 GRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSD 138
Query: 121 SLKTALEEISYWFARNEII 139
S+++A EI+ WF +E++
Sbjct: 139 SVESARREIALWFRADELL 157
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding,
ATP-binding, metal-binding, phosphoprotein, nucleotide
metabolism, cytoplasm, magnesium; 2.0A {Bacillus
anthracis} (A:)
Length = 148
Score = 155 bits (392), Expect = 2e-39
Identities = 60/137 (43%), Positives = 84/137 (61%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+EKTF M+KPD V+R IG IV E G +V AK + + A Y H+++PFF E
Sbjct: 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV + SGPVF V +GE + R +MG T P +A GTIR +G+++ +N IHGSDSL
Sbjct: 61 LVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSL 120
Query: 123 KTALEEISYWFARNEII 139
++A EI +F E++
Sbjct: 121 ESAEREIGIFFKEEELV 137
>3bbb_A Nucleoside diphosphate kinase B; transcription factor,
cancer, NM23 GEN, hexamer, activator, anti-oncogene,
ATP-binding, cell cycle, cytoplasm; HET: DG DA; 1.30A
{Homo sapiens} (A:)
Length = 151
Score = 155 bits (392), Expect = 2e-39
Identities = 61/137 (44%), Positives = 86/137 (62%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+TF IKPD V+R L+G I+K E G +VA KF + + + Y+ KDRPFFP
Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV+ M SGPV V +G + R ++G+T+P + GTIR + I +G N IHGSDS+
Sbjct: 63 LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122
Query: 123 KTALEEISYWFARNEII 139
K+A +EIS WF E++
Sbjct: 123 KSAEKEISLWFKPEELV 139
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} (A:)
Length = 137
Score = 154 bits (390), Expect = 4e-39
Identities = 59/137 (43%), Positives = 88/137 (64%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+TF MIKPD V+R L+G I+ E G + A K ++++ AE Y H+++PFFP
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV+ + SGPV VL+G +++ R++MG T PK AL GTIR + +I EN IHGS +L
Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120
Query: 123 KTALEEISYWFARNEII 139
+ A EI+ +F E++
Sbjct: 121 EDAQREIALFFRPEELL 137
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE;
1.80A {Arabidopsis thaliana} (A:)
Length = 153
Score = 154 bits (390), Expect = 5e-39
Identities = 47/137 (34%), Positives = 75/137 (54%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+T+ M+KPD ++R L+G I+ E G ++ K ++ AE+ Y + FFP
Sbjct: 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 64
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
L++ + SGPV +G ++ R+++G TDP +A GTIR + G N +HGSDS
Sbjct: 65 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 124
Query: 123 KTALEEISYWFARNEII 139
+ EI WF E+
Sbjct: 125 ENGKREIGLWFKEGELC 141
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infectious
disease, babesiosis; 2.50A {Babesia bovis T2BO} (A:)
Length = 156
Score = 154 bits (389), Expect = 5e-39
Identities = 53/139 (38%), Positives = 78/139 (56%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
+E+T+ M+KPD V+R LIG I+K E GL ++AAKF Y HKD+PFF
Sbjct: 7 HHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFF 66
Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
+L + GPVF + +G EAI R ++G T P ++ GTIR +G+ N +H S
Sbjct: 67 KDLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASS 126
Query: 121 SLKTALEEISYWFARNEII 139
S + A E + WF +++
Sbjct: 127 SAEDAARECALWFTPEQLV 145
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET:
CDP; 2.20A {Halobacterium salinarum} (A:)
Length = 164
Score = 154 bits (389), Expect = 6e-39
Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
E+TF M+KPD V+R LIG IV LE GL +V KF ++ + A + Y H+D+PFF
Sbjct: 8 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDG 67
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV + SGPVF V +G +A + R++MG TD + A GTIR YG +G N IHGSD
Sbjct: 68 LVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHE 127
Query: 123 KTALE--EISYWFARNEII 139
EI+ +F +E++
Sbjct: 128 DEGANEREIALFFDDDELV 146
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer- OF-prune, transferase; 2.40A {Homo sapiens} (A:)
Length = 162
Score = 153 bits (388), Expect = 8e-39
Identities = 47/137 (34%), Positives = 74/137 (54%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
E+T +KPD V+R L+G +++ E G +V K + Y + +PF+P
Sbjct: 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 83
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
L++ M SGPV V +G + +R ++G TD +A GTIR + + I N IH SDS+
Sbjct: 84 LIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSV 143
Query: 123 KTALEEISYWFARNEII 139
+ A EI WF +E++
Sbjct: 144 EGAQREIQLWFQSSELV 160
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A
{Oryza sativa} (A:)
Length = 150
Score = 153 bits (387), Expect = 9e-39
Identities = 56/136 (41%), Positives = 80/136 (58%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E++F MIKPD V+R LIG I+ E G + KF + R A+ Y D+PFFP
Sbjct: 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 61
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV+ +ISGPV V +G++ ++ R ++G T P +A GTIR Y + +G N IHGSDS+
Sbjct: 62 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 121
Query: 123 KTALEEISYWFARNEI 138
+EI+ WF
Sbjct: 122 DNGKKEIALWFPEGLA 137
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic;
AN hexamer structure, ATP-binding, cytoplasm, magnesium,
metal-binding; HET: TNM TNV; 1.65A {Dictyostelium
discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A
1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A*
1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A*
1npk_A ... (A:)
Length = 155
Score = 152 bits (385), Expect = 1e-38
Identities = 53/139 (38%), Positives = 80/139 (57%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
+ E+TF +KPD V R L+G I+ E G +V K + AE Y HK+RPFF
Sbjct: 6 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 65
Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
LV + SGPV V +G+ ++ R ++G T+P + G+IR +G+ +G N I GSD
Sbjct: 66 GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSD 125
Query: 121 SLKTALEEISYWFARNEII 139
S+++A EI+ WF E++
Sbjct: 126 SVESANREIALWFKPEELL 144
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, cytoplasm, magnesium,
metal-binding, mitochondrion; 3.10A {Saccharomyces
cerevisiae} (A:)
Length = 161
Score = 152 bits (385), Expect = 2e-38
Identities = 53/139 (38%), Positives = 81/139 (58%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
E+TF +KPD V+R L+ I+ E G +VA K + K E Y H +PFF
Sbjct: 11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFF 70
Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
P++V M SGP+ V +G++ + + R ++G T+P + GTIR +GI +G N HGSD
Sbjct: 71 PKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSD 130
Query: 121 SLKTALEEISYWFARNEII 139
S+ +A EI+ WF + E++
Sbjct: 131 SVDSAEREINLWFKKEELV 149
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II
tetramer, signaling protein,transferase; 1.62A
{Escherichia coli} (A:)
Length = 142
Score = 151 bits (383), Expect = 3e-38
Identities = 61/137 (44%), Positives = 90/137 (65%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
IE+TFS+IKP+AV +N+IG+I E G +V K + +QA FY H +PFF
Sbjct: 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV+ M SGP+ + VL+GE A+ ++R+++G T+P AL GT+R Y S+ EN HGSDS+
Sbjct: 62 LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSV 121
Query: 123 KTALEEISYWFARNEII 139
++A EI+Y+F E+
Sbjct: 122 ESAAREIAYFFGEGEVC 138
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
(A:)
Length = 150
Score = 151 bits (382), Expect = 3e-38
Identities = 58/137 (42%), Positives = 79/137 (57%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
E+TF M+KPD V+RNL+G +VK E GL + AK +++ A Y PFF
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV SGPVF V +G A + R+++G T+P A GTIR +G+S G N+IHGSDS
Sbjct: 62 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSA 121
Query: 123 KTALEEISYWFARNEII 139
+A +EI +F E
Sbjct: 122 GSAAKEIGAFFGGGEAA 138
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding,
structural genomics, NPPSFA; HET: GDP; 1.70A {Pyrococcus
horikoshii OT3} (A:)
Length = 160
Score = 150 bits (381), Expect = 5e-38
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
E+T +IKPDAV R LIG I+ E GL +V K W++R+ AE Y H+++PFF
Sbjct: 7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKA 66
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGE---NSIHGS 119
L+ + PV + VL+G A+ R++ G TDPK A GTIR +G+ + + N IH S
Sbjct: 67 LIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHAS 126
Query: 120 DSLKTALEEISYWFARNEII 139
DS ++A EIS +F E+
Sbjct: 127 DSKESAEREISLFFKPEELF 146
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A
{Pisum sativum} (A:)
Length = 182
Score = 150 bits (380), Expect = 6e-38
Identities = 56/139 (40%), Positives = 79/139 (56%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
+E+TF IKPD V+R LI I+ E G +V K ++ A+ Y K+RPFF
Sbjct: 30 AELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFF 89
Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
L + SGPV V +GE I+ R+++G TDP+K+ GTIR + +G N IHGSD
Sbjct: 90 NGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSD 149
Query: 121 SLKTALEEISYWFARNEII 139
+TA +EI WF E++
Sbjct: 150 GPETAKDEIKLWFKPEELV 168
Score = 25.1 bits (54), Expect = 4.2
Identities = 2/21 (9%), Positives = 4/21 (19%)
Query: 113 ENSIHGSDSLKTALEEISYWF 133
H + +F
Sbjct: 2 SYYHHHHHHDYDYPTTENLYF 22
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} (A:)
Length = 149
Score = 149 bits (377), Expect = 1e-37
Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+TF MIKPD V+R LIG ++ E G + K + R AE Y + FF
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV ++SGPV + +G+ + R+++G T+P + GTIR + I IG N IHGSDS+
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120
Query: 123 KTALEEISYWFARNEI 138
++A +EI+ WF +
Sbjct: 121 ESARKEIALWFPDGPV 136
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} (A:)
Length = 136
Score = 146 bits (370), Expect = 1e-36
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 4 EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63
E+T +IKPD ++R LIG I+ +E GL + A + ++ + A Y H+ +PFF L
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALK-GTIRNKYGISIGENSIHGSDSL 122
++ + SGPV +++G AI+ R++ G TDP +A GTIR + + N +HGSDS
Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSA 122
Query: 123 KTALEEISYWF 133
++A EI+ WF
Sbjct: 123 ESAQREIALWF 133
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase;
phosphotransferase nucleotide binding, ATP-binding,
magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba
polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A*
3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A*
3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A*
3eic_A* 3evw_A* 3gpa_A* ... (A:)
Length = 146
Score = 146 bits (370), Expect = 1e-36
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRK-QAEDFYLIHKDRPF 59
+++T +IKPDA +R+L+ I+ +E +V+ KF + E Y H ++ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 60 FPELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGS 119
F + M+SGP+ V +G +AISK R + G+T+P + GTIR I EN IH S
Sbjct: 64 FNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHAS 123
Query: 120 DSLKTALEEISYWFARNEII 139
DS +A++EIS WF ++
Sbjct: 124 DSEDSAVDEISIWFPETKME 143
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich,
ferredoxin fold, transferase; HET: PGE; 2.50A
{Pyrobaculum aerophilum} (A:)
Length = 195
Score = 135 bits (340), Expect = 3e-33
Identities = 50/180 (27%), Positives = 70/180 (38%), Gaps = 43/180 (23%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAK------------------------ 38
+EKT ++KPDAV R L+ I+ + GL +VA K
Sbjct: 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYPSSEEWLQSAG 74
Query: 39 ---------FCWMNRKQAEDFYLIHKDRPFFPELVQAMISGPVFLQVLKGEEAISKNREV 89
R + + R LV+ SGP + VLKG A+ R++
Sbjct: 75 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKL 134
Query: 90 MGDTDPKKALKGTIRNKYGISIGE----------NSIHGSDSLKTALEEISYWFARNEII 139
+G T P A GTIR Y I + N +H SDS A EI +WF E++
Sbjct: 135 VGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVL 194
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating
protein and GTPase, retinitis pigmentosa, GTP-binding,
lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens}
PDB: 3bh6_B* 2bx6_A (B:214-352)
Length = 139
Score = 121 bits (304), Expect = 4e-29
Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 22/138 (15%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
E ++ ++ E+ G +V K M + A+ + R
Sbjct: 20 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVF-----REKA 74
Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
P+ + + GPV G+ A+ + ++ + + S+
Sbjct: 75 PDFLPLLNKGPVIALEFNGDGAVEVCQLIVNEIFNG-----------------TKMFVSE 117
Query: 121 SLKTALEEISYWFARNEI 138
S +TA ++ ++ +I
Sbjct: 118 SKETASGDVDSFYNFADI 135
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC,
structural genomics, protein structure initiative;
2.00A {Aeropyrum pernix} (A:122-261,A:351-391)
Length = 181
Score = 26.2 bits (57), Expect = 1.6
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 17 RNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQAMISGPVFLQV 76
R+ IG+I K GL VV + +A+ + + P+ V + +
Sbjct: 35 RSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREXLAADPDYVWCGNTISSCSLL 94
Query: 77 LK 78
+
Sbjct: 95 GR 96
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate,
decarboxylation, lysine, TIM-barrel, lyase; HET: PLP
MES; 2.10A {Escherichia coli} (A:34-273)
Length = 240
Score = 26.0 bits (56), Expect = 1.9
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 9/116 (7%)
Query: 14 AVKRNLIGSIVKELEDYGLCVVAA------KFCWMNRKQAEDFYLIHKDRPFFP--ELVQ 65
A K I++ + + G+ V + + I L +
Sbjct: 19 AQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLER 78
Query: 66 AMISG-PVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
PV + + + + G ++ + GENS HG
Sbjct: 79 VSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIW 134
>2z4d_A 26S proteasome regulatory subunit RPN13; PH domain,
nuclear protein; NMR {Saccharomyces cerevisiae} (A:)
Length = 96
Score = 25.1 bits (55), Expect = 3.4
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSI-VKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPF 59
+ + P V+ G I +K E+ L F W ++ L
Sbjct: 10 CEYNEDSRLCTPIPVQ----GEIEIKPNEEEELGFW--DFEWRPTEKPVGRELDPISLIL 63
Query: 60 FPE 62
P
Sbjct: 64 IPG 66
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene
imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena
variabilis} PDB: 3czo_A* 2nyf_A* (A:223-565)
Length = 343
Score = 25.0 bits (54), Expect = 3.6
Identities = 4/69 (5%), Positives = 14/69 (20%), Gaps = 3/69 (4%)
Query: 25 KELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQA--MISGPVFLQVLKGEEA 82
L + R + + Q + + G
Sbjct: 273 HYDARACLSPATERLYSAVRHVV-GQKPTSDRPYIWNDNEQGLDEHIARISADIAAGGVI 331
Query: 83 ISKNREVMG 91
+ ++++
Sbjct: 332 VQAVQDILP 340
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide
bond, HOST- virus interaction, immune response,
immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
(A:)
Length = 70
Score = 24.8 bits (54), Expect = 5.2
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 20 IGSIVKELEDYGLCVVAAKFCWMNRKQAE 48
+G + L GL + + R+QAE
Sbjct: 14 LGGVAGLLLFIGLGIFFSVRSRHRRRQAE 42
>2rg4_A Uncharacterized protein; rhodobacterales, Q2CBJ1_9RHOB,
structural genomics, PSI-2 protein structure initiative;
1.90A {Oceanicola granulosus HTCC2516} PDB: 3bvc_A (A:)
Length = 216
Score = 24.4 bits (52), Expect = 5.7
Identities = 3/21 (14%), Positives = 5/21 (23%)
Query: 40 CWMNRKQAEDFYLIHKDRPFF 60
W+N + H
Sbjct: 105 IWINILPEGGVHGSHIHPHSV 125
>1reg_X T4 REGA; translational regulator protein; 1.90A
{Enterobacteria phage T4} (X:)
Length = 122
Score = 24.4 bits (53), Expect = 5.8
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 13 DAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLI-HKDRP 58
D V+R+ SI LED+GL + + +F +I K +
Sbjct: 67 DEVRRD---SIAWLLEDWGLIEIVPGQRTFMKDLTNNFRVISFKQKH 110
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium, NESG; HET: GR0; 2.41A
{Nostoc SP} (A:40-130)
Length = 91
Score = 23.9 bits (52), Expect = 8.3
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 56 DRPFFPELVQAMISGPVFLQVLKGEEAIS 84
D ++V + P Q + +
Sbjct: 1 DPDTLQKVVAVLSLTPQGKQAFEDRPXLG 29
>1j27_A Hypothetical protein TT1725; structural genomics,
hypothetical protein from thermus thermophilus HB8, MAD;
1.70A {Thermus thermophilus HB8} (A:)
Length = 102
Score = 23.8 bits (52), Expect = 8.6
Identities = 6/60 (10%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 66 AMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLKTA 125
G ++ ++ + R ++ K ++ ++ +S ++G D+
Sbjct: 2 KAYLGLYTARLETPARSLKEKRALI------KPALERLKARFPVSAAR--LYGLDAWGYE 53
>1ktb_A Alpha-N-acetylgalactosaminidase; glycoprotein,
(beta/alpha)8 barrel, hydrolase; HET: NAG; 1.90A
{Gallus gallus} (A:1-240)
Length = 240
Score = 23.7 bits (50), Expect = 9.3
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 15 VKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQAMIS 69
+ G + CW +++ + L+ D FP ++A+
Sbjct: 38 FMEMADRIAEDGWRELGYKYINIDDCWAAKQRDAEGRLV-PDPERFPRGIKALAD 91
>2qvt_A AVRL567-D; AVRL567-A, crystallization, molecular
replacement, plant disease resistance, , unknown
function; 2.26A {Melampsora lini} (A:)
Length = 150
Score = 23.9 bits (51), Expect = 9.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 44 RKQAEDFYLIHKDRPFFPELVQ 65
R+ +DF+L D P FP+ ++
Sbjct: 122 RRTIQDFHLFANDIPNFPDYIK 143
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,073,195
Number of extensions: 43703
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 40
Length of query: 140
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 60
Effective length of database: 2,251,649
Effective search space: 135098940
Effective search space used: 135098940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)