RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780390|ref|YP_003064803.1| nucleoside diphosphate kinase [Candidatus Liberibacter asiaticus str. psy62] (140 letters) >1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer- OF-prune, transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Length = 162 Score = 183 bits (466), Expect = 1e-47 Identities = 47/136 (34%), Positives = 74/136 (54%) Query: 4 EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63 E+T +KPD V+R L+G +++ E G +V K + Y + +PF+P L Sbjct: 25 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPAL 84 Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLK 123 ++ M SGPV V +G + +R ++G TD +A GTIR + + I N IH SDS++ Sbjct: 85 IRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVE 144 Query: 124 TALEEISYWFARNEII 139 A EI WF +E++ Sbjct: 145 GAQREIQLWFQSSELV 160 >1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R Length = 144 Score = 173 bits (440), Expect = 1e-44 Identities = 69/137 (50%), Positives = 97/137 (70%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 IE+T S+IKPD +++ +IG I+ E+ GL VA + +++ QAE FY +HK RPFF + Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LVQ MISGPV L VL+GE A+ NR++MG T+P +A +GTIR + SI +N++HGSDSL Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121 Query: 123 KTALEEISYWFARNEII 139 + A EI+Y+F EI Sbjct: 122 ENAKIEIAYFFRETEIH 138 >3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Length = 172 Score = 170 bits (433), Expect = 8e-44 Identities = 57/137 (41%), Positives = 82/137 (59%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+TF IKPD V+R L+G I+K E G +V KF + ++ Y+ KDRPFF Sbjct: 24 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAG 83 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ M SGPV V +G + R ++G+T+P + GTIR + I +G N IHGSDS+ Sbjct: 84 LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 143 Query: 123 KTALEEISYWFARNEII 139 ++A +EI WF E++ Sbjct: 144 ESAEKEIGLWFHPEELV 160 >1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Length = 136 Score = 168 bits (426), Expect = 5e-43 Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%) Query: 4 EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63 E+T +IKPD ++R LIG I+ +E GL + A + ++ + A Y H+ +PFF L Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62 Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALK-GTIRNKYGISIGENSIHGSDSL 122 ++ + SGPV +++G AI+ R++ G TDP +A GTIR + + N +HGSDS Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSA 122 Query: 123 KTALEEISYWF 133 ++A EI+ WF Sbjct: 123 ESAQREIALWF 133 >3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} Length = 151 Score = 165 bits (418), Expect = 5e-42 Identities = 58/131 (44%), Positives = 84/131 (64%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+TF MIKPDA+KR LI I++ E+ GL + A+K R+ E Y PFF E Sbjct: 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSE 64 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 +V+ M+SG V V G++A+S R+++G+T+P+ A GTIR YG+S G+N IHGSD + Sbjct: 65 MVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCV 124 Query: 123 KTALEEISYWF 133 + A +EI W Sbjct: 125 ENAEKEIKLWI 135 >1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Length = 150 Score = 162 bits (412), Expect = 2e-41 Identities = 58/137 (42%), Positives = 79/137 (57%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+TF M+KPD V+RNL+G +VK E GL + AK +++ A Y PFF Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV SGPVF V +G A + R+++G T+P A GTIR +G+S G N+IHGSDS Sbjct: 62 LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSA 121 Query: 123 KTALEEISYWFARNEII 139 +A +EI +F E Sbjct: 122 GSAAKEIGAFFGGGEAA 138 >1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Length = 150 Score = 162 bits (411), Expect = 3e-41 Identities = 56/131 (42%), Positives = 80/131 (61%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E++F MIKPD V+R LIG I+ E G + KF + R A+ Y D+PFFP Sbjct: 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 61 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ +ISGPV V +G++ ++ R ++G T P +A GTIR Y + +G N IHGSDS+ Sbjct: 62 LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 121 Query: 123 KTALEEISYWF 133 +EI+ WF Sbjct: 122 DNGKKEIALWF 132 >1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Length = 137 Score = 154 bits (390), Expect = 6e-39 Identities = 59/137 (43%), Positives = 88/137 (64%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+TF MIKPD V+R L+G I+ E G + A K ++++ AE Y H+++PFFP Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ + SGPV VL+G +++ R++MG T PK AL GTIR + +I EN IHGS +L Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120 Query: 123 KTALEEISYWFARNEII 139 + A EI+ +F E++ Sbjct: 121 EDAQREIALFFRPEELL 137 >2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Length = 142 Score = 153 bits (387), Expect = 2e-38 Identities = 61/136 (44%), Positives = 90/136 (66%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 IE+TFS+IKP+AV +N+IG+I E G +V K + +QA FY H +PFF Sbjct: 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ M SGP+ + VL+GE A+ ++R+++G T+P AL GT+R Y S+ EN HGSDS+ Sbjct: 62 LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSV 121 Query: 123 KTALEEISYWFARNEI 138 ++A EI+Y+F E+ Sbjct: 122 ESAAREIAYFFGEGEV 137 >1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Length = 195 Score = 151 bits (381), Expect = 7e-38 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 43/182 (23%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHK----- 55 M +EKT ++KPDAV R L+ I+ + GL +VA K + ++ E FY + Sbjct: 13 MPVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQS 72 Query: 56 ----------------------------DRPFFPELVQAMISGPVFLQVLKGEEAISKNR 87 R LV+ M SGP + VLKG A+ R Sbjct: 73 AGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVR 132 Query: 88 EVMGDTDPKKALKGTIRNKYGISIGE----------NSIHGSDSLKTALEEISYWFARNE 137 +++G T P A GTIR Y I + N +H SDS A EI +WF E Sbjct: 133 KLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEE 192 Query: 138 II 139 ++ Sbjct: 193 VL 194 >1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP, PSI; 3.05A {Plasmodium falciparum 3D7} SCOP: d.58.6.1 Length = 157 Score = 150 bits (379), Expect = 1e-37 Identities = 51/137 (37%), Positives = 83/137 (60%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +EK+F MIKPD V+R L+G+I+K E G ++A K + ++ Y D+PFF Sbjct: 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 68 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV + GPV V +G + + + R+++G+T+P + GTIR + + + +N IHGSDS+ Sbjct: 69 LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSV 128 Query: 123 KTALEEISYWFARNEII 139 +A +EI+ WF E+ Sbjct: 129 ASANKEINIWFKAEELT 145 >1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Length = 182 Score = 149 bits (378), Expect = 2e-37 Identities = 56/137 (40%), Positives = 79/137 (57%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+TF IKPD V+R LI I+ E G +V K ++ A+ Y K+RPFF Sbjct: 32 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNG 91 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 L + SGPV V +GE I+ R+++G TDP+K+ GTIR + +G N IHGSD Sbjct: 92 LCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGP 151 Query: 123 KTALEEISYWFARNEII 139 +TA +EI WF E++ Sbjct: 152 ETAKDEIKLWFKPEELV 168 >1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Length = 169 Score = 149 bits (378), Expect = 2e-37 Identities = 54/139 (38%), Positives = 84/139 (60%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 E+TF +KPD V+R L+G IV+ E G +VA K + + + Y ++RPF+ Sbjct: 19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFY 78 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 LV+ M SGPV V +G + + +R ++G T+P A GTIR + I +G+N IHGSD Sbjct: 79 GRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSD 138 Query: 121 SLKTALEEISYWFARNEII 139 S+++A EI+ WF +E++ Sbjct: 139 SVESARREIALWFRADELL 157 >3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, anti-oncogene, ATP-binding, cell cycle, cytoplasm; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Length = 151 Score = 148 bits (376), Expect = 3e-37 Identities = 61/137 (44%), Positives = 86/137 (62%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+TF IKPD V+R L+G I+K E G +VA KF + + + Y+ KDRPFFP Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV+ M SGPV V +G + R ++G+T+P + GTIR + I +G N IHGSDS+ Sbjct: 63 LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122 Query: 123 KTALEEISYWFARNEII 139 K+A +EIS WF E++ Sbjct: 123 KSAEKEISLWFKPEELV 139 >3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infectious disease, babesiosis; 2.50A {Babesia bovis T2BO} Length = 156 Score = 146 bits (370), Expect = 1e-36 Identities = 53/137 (38%), Positives = 78/137 (56%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+T+ M+KPD V+R LIG I+K E GL ++AAKF Y HKD+PFF + Sbjct: 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKD 68 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 L + GPVF + +G EAI R ++G T P ++ GTIR +G+ N +H S S Sbjct: 69 LCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSA 128 Query: 123 KTALEEISYWFARNEII 139 + A E + WF +++ Sbjct: 129 EDAARECALWFTPEQLV 145 >2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Length = 148 Score = 145 bits (368), Expect = 3e-36 Identities = 60/137 (43%), Positives = 84/137 (61%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +EKTF M+KPD V+R IG IV E G +V AK + + A Y H+++PFF E Sbjct: 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV + SGPVF V +GE + R +MG T P +A GTIR +G+++ +N IHGSDSL Sbjct: 61 LVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSL 120 Query: 123 KTALEEISYWFARNEII 139 ++A EI +F E++ Sbjct: 121 ESAEREIGIFFKEEELV 137 >1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Length = 149 Score = 145 bits (366), Expect = 4e-36 Identities = 52/136 (38%), Positives = 78/136 (57%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+TF MIKPD V+R LIG ++ E G + K + R AE Y + FF Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV ++SGPV + +G+ + R+++G T+P + GTIR + I IG N IHGSDS+ Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120 Query: 123 KTALEEISYWFARNEI 138 ++A +EI+ WF + Sbjct: 121 ESARKEIALWFPDGPV 136 >3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, cytoplasm, magnesium, metal-binding, mitochondrion; 3.10A {Saccharomyces cerevisiae} Length = 161 Score = 144 bits (365), Expect = 6e-36 Identities = 53/137 (38%), Positives = 81/137 (59%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+TF +KPD V+R L+ I+ E G +VA K + K E Y H +PFFP+ Sbjct: 13 TERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPK 72 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 +V M SGP+ V +G++ + + R ++G T+P + GTIR +GI +G N HGSDS+ Sbjct: 73 MVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSV 132 Query: 123 KTALEEISYWFARNEII 139 +A EI+ WF + E++ Sbjct: 133 DSAEREINLWFKKEELV 149 >1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Length = 153 Score = 144 bits (364), Expect = 7e-36 Identities = 47/137 (34%), Positives = 75/137 (54%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 +E+T+ M+KPD ++R L+G I+ E G ++ K ++ AE+ Y + FFP Sbjct: 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 64 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 L++ + SGPV +G ++ R+++G TDP +A GTIR + G N +HGSDS Sbjct: 65 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 124 Query: 123 KTALEEISYWFARNEII 139 + EI WF E+ Sbjct: 125 ENGKREIGLWFKEGELC 141 >3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Length = 146 Score = 140 bits (354), Expect = 9e-35 Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRK-QAEDFYLIHKDRPFFP 61 +++T +IKPDA +R+L+ I+ +E +V+ KF + E Y H ++ +F Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65 Query: 62 ELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDS 121 + M+SGP+ V +G +AISK R + G+T+P + GTIR I EN IH SDS Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS 125 Query: 122 LKTALEEISYWFARNEI 138 +A++EIS WF ++ Sbjct: 126 EDSAVDEISIWFPETKM 142 >2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Length = 164 Score = 137 bits (346), Expect = 9e-34 Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+TF M+KPD V+R LIG IV LE GL +V KF ++ + A + Y H+D+PFF Sbjct: 8 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDG 67 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122 LV + SGPVF V +G +A + R++MG TD + A GTIR YG +G N IHGSD Sbjct: 68 LVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHE 127 Query: 123 KTALE--EISYWFARNEII 139 EI+ +F +E++ Sbjct: 128 DEGANEREIALFFDDDELV 146 >3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, cytoplasm, magnesium, metal-binding; HET: TNM TNV; 1.65A {Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Length = 155 Score = 137 bits (345), Expect = 1e-33 Identities = 53/139 (38%), Positives = 80/139 (57%) Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60 + E+TF +KPD V R L+G I+ E G +V K + AE Y HK+RPFF Sbjct: 6 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 65 Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120 LV + SGPV V +G+ ++ R ++G T+P + G+IR +G+ +G N I GSD Sbjct: 66 GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSD 125 Query: 121 SLKTALEEISYWFARNEII 139 S+++A EI+ WF E++ Sbjct: 126 SVESANREIALWFKPEELL 144 >2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Length = 160 Score = 135 bits (340), Expect = 4e-33 Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 3/140 (2%) Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 E+T +IKPDAV R LIG I+ E GL +V K W++R+ AE Y H+++PFF Sbjct: 7 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKA 66 Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGE---NSIHGS 119 L+ + PV + VL+G A+ R++ G TDPK A GTIR +G+ + + N IH S Sbjct: 67 LIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHAS 126 Query: 120 DSLKTALEEISYWFARNEII 139 DS ++A EIS +F E+ Sbjct: 127 DSKESAEREISLFFKPEELF 146 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.069 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 13/37 (35%) Query: 96 KKALKGTIRNKYGISIGENSIHGSDS-----LKTALE 127 K+ALK K S+ ++ DS +K +E Sbjct: 19 KQALK-----KLQASL---KLYADDSAPALAIKATME 47 Score = 31.5 bits (70), Expect = 0.078 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 6/31 (19%) Query: 75 QVLKGEEAISKNREVMGDTD--PKKALKGTI 103 Q LK +A K + D D P A+K T+ Sbjct: 20 QALKKLQASLK---LYAD-DSAPALAIKATM 46 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.0 bits (62), Expect = 0.80 Identities = 26/160 (16%), Positives = 40/160 (25%), Gaps = 60/160 (37%) Query: 7 FSMIKPDAVKRNL-IGS-------------IVKELEDYGLCVVAAK-----FCWMN---- 43 FS K R L + S I K+L + A + + Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468 Query: 44 RKQAEDFYLIHKDRPFFPELVQAMISGPVFLQVLKGEEAISKNREVMG-----DTDPKKA 98 R + + +V +I PV E D P Sbjct: 469 RVLSGS--IS-------ERIVDCIIRLPVKW-----ETTT-----QFKATHILDFGP-GG 508 Query: 99 LKG----TIRNK--YGISIGENSIHGSDSLKTALE-EISY 131 G T RNK G+ + I L + + + Sbjct: 509 ASGLGVLTHRNKDGTGVRV----IVAGT-LDINPDDDYGF 543 >3b9e_A Chitinase A; TIM-barrel, glycosidase, hydrolase; 1.70A {Vibrio harveyi} PDB: 3b9a_A* 3b9d_A 3b8s_A Length = 584 Score = 27.9 bits (61), Expect = 0.96 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 2/65 (3%) Query: 5 KTFSMIKPDAVKRNLIGSIVKELEDYGLC--VVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62 F + + S+ K L+ + V A D D P + Sbjct: 258 DPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWMFPGGGGAAADKGDPVNDGPAYIA 317 Query: 63 LVQAM 67 L++ + Sbjct: 318 LMREL 322 >2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens} Length = 70 Score = 25.6 bits (56), Expect = 4.2 Identities = 8/30 (26%), Positives = 14/30 (46%) Query: 19 LIGSIVKELEDYGLCVVAAKFCWMNRKQAE 48 ++G + L GL + + R+QAE Sbjct: 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQAE 42 >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Length = 573 Score = 24.6 bits (53), Expect = 8.4 Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 33/101 (32%) Query: 20 IGSIVKELEDYGLCVVAA---------KFCWMNRKQAEDFYLIHKDRPFFPELVQAMISG 70 I + EL G V+AA KF QA F+L+H P Sbjct: 458 IAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPL----------- 506 Query: 71 PVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISI 111 E ++ + A +G I+ G+ Sbjct: 507 ---------EHCEQSDKRGI----YAAARRGEIKGFTGVDD 534 >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Length = 546 Score = 24.6 bits (53), Expect = 8.5 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 16/92 (17%) Query: 20 IGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQAMISGPVFLQVLKG 79 +G + E+ + V+ A R + ++ F V A + Sbjct: 433 VGFVASEIVKHNGVVICA-LVSPYRSARNQVRNMMEEGKFIEVFVDAPV----------- 480 Query: 80 EEAISKNREVMGDTDPKKALKGTIRNKYGISI 111 E ++ + + KKA +G I+ G+ Sbjct: 481 EVCEERDVKGLY----KKAKEGLIKGFTGVDD 508 >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Score = 24.5 bits (53), Expect = 9.7 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Query: 81 EAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLKTALE 127 E +N E+ G +P +AL T+R + ENS+ +D Sbjct: 15 EFFKRNPELAGFPNPARALYQTVRE-----LIENSLDATDVHGILPN 56 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.137 0.402 Gapped Lambda K H 0.267 0.0624 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,232,652 Number of extensions: 51687 Number of successful extensions: 167 Number of sequences better than 10.0: 1 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 34 Length of query: 140 Length of database: 5,693,230 Length adjustment: 83 Effective length of query: 57 Effective length of database: 3,680,978 Effective search space: 209815746 Effective search space used: 209815746 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.0 bits)