RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780390|ref|YP_003064803.1| nucleoside diphosphate kinase
[Candidatus Liberibacter asiaticus str. psy62]
         (140 letters)



>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
           killer- OF-prune, transferase; 2.40A {Homo sapiens}
           SCOP: d.58.6.1
          Length = 162

 Score =  183 bits (466), Expect = 1e-47
 Identities = 47/136 (34%), Positives = 74/136 (54%)

Query: 4   EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63
           E+T   +KPD V+R L+G +++  E  G  +V  K          + Y   + +PF+P L
Sbjct: 25  ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPAL 84

Query: 64  VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLK 123
           ++ M SGPV   V +G   +  +R ++G TD  +A  GTIR  + + I  N IH SDS++
Sbjct: 85  IRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVE 144

Query: 124 TALEEISYWFARNEII 139
            A  EI  WF  +E++
Sbjct: 145 GAQREIQLWFQSSELV 160


>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
           {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
          Length = 144

 Score =  173 bits (440), Expect = 1e-44
 Identities = 69/137 (50%), Positives = 97/137 (70%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           IE+T S+IKPD +++ +IG I+   E+ GL  VA +   +++ QAE FY +HK RPFF +
Sbjct: 2   IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LVQ MISGPV L VL+GE A+  NR++MG T+P +A +GTIR  +  SI +N++HGSDSL
Sbjct: 62  LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121

Query: 123 KTALEEISYWFARNEII 139
           + A  EI+Y+F   EI 
Sbjct: 122 ENAKIEIAYFFRETEIH 138


>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
           transferase, tumor suppressor; 2.10A {Homo sapiens}
          Length = 172

 Score =  170 bits (433), Expect = 8e-44
 Identities = 57/137 (41%), Positives = 82/137 (59%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
            E+TF  IKPD V+R L+G I+K  E  G  +V  KF   +    ++ Y+  KDRPFF  
Sbjct: 24  CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAG 83

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV+ M SGPV   V +G   +   R ++G+T+P  +  GTIR  + I +G N IHGSDS+
Sbjct: 84  LVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 143

Query: 123 KTALEEISYWFARNEII 139
           ++A +EI  WF   E++
Sbjct: 144 ESAEKEIGLWFHPEELV 160


>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
           transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
           d.58.6.1
          Length = 136

 Score =  168 bits (426), Expect = 5e-43
 Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)

Query: 4   EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63
           E+T  +IKPD ++R LIG I+  +E  GL + A +   ++ + A   Y  H+ +PFF  L
Sbjct: 3   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62

Query: 64  VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALK-GTIRNKYGISIGENSIHGSDSL 122
           ++ + SGPV   +++G  AI+  R++ G TDP +A   GTIR  + +    N +HGSDS 
Sbjct: 63  LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSA 122

Query: 123 KTALEEISYWF 133
           ++A  EI+ WF
Sbjct: 123 ESAQREIALWF 133


>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
           emerald biostructures, encepha cuniculi, structural
           genomics; 2.08A {Encephalitozoon cuniculi}
          Length = 151

 Score =  165 bits (418), Expect = 5e-42
 Identities = 58/131 (44%), Positives = 84/131 (64%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +E+TF MIKPDA+KR LI  I++  E+ GL + A+K     R+  E  Y      PFF E
Sbjct: 5   MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSE 64

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           +V+ M+SG V   V  G++A+S  R+++G+T+P+ A  GTIR  YG+S G+N IHGSD +
Sbjct: 65  MVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCV 124

Query: 123 KTALEEISYWF 133
           + A +EI  W 
Sbjct: 125 ENAEKEIKLWI 135


>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
           transferase; 2.20A {Virgibacillus halodenitrificans}
           SCOP: d.58.6.1
          Length = 150

 Score =  162 bits (412), Expect = 2e-41
 Identities = 58/137 (42%), Positives = 79/137 (57%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
            E+TF M+KPD V+RNL+G +VK  E  GL +  AK   +++  A   Y      PFF  
Sbjct: 2   KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV    SGPVF  V +G  A +  R+++G T+P  A  GTIR  +G+S G N+IHGSDS 
Sbjct: 62  LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSA 121

Query: 123 KTALEEISYWFARNEII 139
            +A +EI  +F   E  
Sbjct: 122 GSAAKEIGAFFGGGEAA 138


>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
           sativa} SCOP: d.58.6.1
          Length = 150

 Score =  162 bits (411), Expect = 3e-41
 Identities = 56/131 (42%), Positives = 80/131 (61%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +E++F MIKPD V+R LIG I+   E  G  +   KF  + R  A+  Y    D+PFFP 
Sbjct: 2   MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 61

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV+ +ISGPV   V +G++ ++  R ++G T P +A  GTIR  Y + +G N IHGSDS+
Sbjct: 62  LVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSV 121

Query: 123 KTALEEISYWF 133
               +EI+ WF
Sbjct: 122 DNGKKEIALWF 132


>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
           structural genomics/proteomics initiative, RSGI,
           structural genomics; 2.00A {Thermus thermophilus} SCOP:
           d.58.6.1 PDB: 1wkk_A* 1wkl_A*
          Length = 137

 Score =  154 bits (390), Expect = 6e-39
 Identities = 59/137 (43%), Positives = 88/137 (64%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +E+TF MIKPD V+R L+G I+   E  G  + A K   ++++ AE  Y  H+++PFFP 
Sbjct: 1   MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV+ + SGPV   VL+G   +++ R++MG T PK AL GTIR  +  +I EN IHGS +L
Sbjct: 61  LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120

Query: 123 KTALEEISYWFARNEII 139
           + A  EI+ +F   E++
Sbjct: 121 EDAQREIALFFRPEELL 137


>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
           signaling protein,transferase; 1.62A {Escherichia coli}
          Length = 142

 Score =  153 bits (387), Expect = 2e-38
 Identities = 61/136 (44%), Positives = 90/136 (66%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           IE+TFS+IKP+AV +N+IG+I    E  G  +V  K   +  +QA  FY  H  +PFF  
Sbjct: 2   IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV+ M SGP+ + VL+GE A+ ++R+++G T+P  AL GT+R  Y  S+ EN  HGSDS+
Sbjct: 62  LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSV 121

Query: 123 KTALEEISYWFARNEI 138
           ++A  EI+Y+F   E+
Sbjct: 122 ESAAREIAYFFGEGEV 137


>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
           fold, transferase; HET: PGE; 2.50A {Pyrobaculum
           aerophilum} SCOP: d.58.6.1
          Length = 195

 Score =  151 bits (381), Expect = 7e-38
 Identities = 54/182 (29%), Positives = 76/182 (41%), Gaps = 43/182 (23%)

Query: 1   MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHK----- 55
           M +EKT  ++KPDAV R L+  I+   +  GL +VA K    + ++ E FY   +     
Sbjct: 13  MPVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQS 72

Query: 56  ----------------------------DRPFFPELVQAMISGPVFLQVLKGEEAISKNR 87
                                        R     LV+ M SGP  + VLKG  A+   R
Sbjct: 73  AGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVR 132

Query: 88  EVMGDTDPKKALKGTIRNKYGISIGE----------NSIHGSDSLKTALEEISYWFARNE 137
           +++G T P  A  GTIR  Y I   +          N +H SDS   A  EI +WF   E
Sbjct: 133 KLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEE 192

Query: 138 II 139
           ++
Sbjct: 193 VL 194


>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
           structural genomics, SGPP, PSI; 3.05A {Plasmodium
           falciparum 3D7} SCOP: d.58.6.1
          Length = 157

 Score =  150 bits (379), Expect = 1e-37
 Identities = 51/137 (37%), Positives = 83/137 (60%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +EK+F MIKPD V+R L+G+I+K  E  G  ++A K      +  ++ Y    D+PFF  
Sbjct: 9   MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 68

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV  +  GPV   V +G + + + R+++G+T+P  +  GTIR  + + + +N IHGSDS+
Sbjct: 69  LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSV 128

Query: 123 KTALEEISYWFARNEII 139
            +A +EI+ WF   E+ 
Sbjct: 129 ASANKEINIWFKAEELT 145


>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
           sativum} SCOP: d.58.6.1
          Length = 182

 Score =  149 bits (378), Expect = 2e-37
 Identities = 56/137 (40%), Positives = 79/137 (57%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +E+TF  IKPD V+R LI  I+   E  G  +V  K     ++ A+  Y   K+RPFF  
Sbjct: 32  LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNG 91

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           L   + SGPV   V +GE  I+  R+++G TDP+K+  GTIR    + +G N IHGSD  
Sbjct: 92  LCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGP 151

Query: 123 KTALEEISYWFARNEII 139
           +TA +EI  WF   E++
Sbjct: 152 ETAKDEIKLWFKPEELV 168


>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
           transferase, structural genomics, structural genomics
           consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
           d.58.6.1
          Length = 169

 Score =  149 bits (378), Expect = 2e-37
 Identities = 54/139 (38%), Positives = 84/139 (60%)

Query: 1   MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
              E+TF  +KPD V+R L+G IV+  E  G  +VA K    + +   + Y   ++RPF+
Sbjct: 19  GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFY 78

Query: 61  PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
             LV+ M SGPV   V +G + +  +R ++G T+P  A  GTIR  + I +G+N IHGSD
Sbjct: 79  GRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSD 138

Query: 121 SLKTALEEISYWFARNEII 139
           S+++A  EI+ WF  +E++
Sbjct: 139 SVESARREIALWFRADELL 157


>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
           GEN, hexamer, activator, anti-oncogene, ATP-binding,
           cell cycle, cytoplasm; HET: DG DA; 1.30A {Homo sapiens}
           SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
           1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
           1ndl_A*
          Length = 151

 Score =  148 bits (376), Expect = 3e-37
 Identities = 61/137 (44%), Positives = 86/137 (62%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +E+TF  IKPD V+R L+G I+K  E  G  +VA KF   + +  +  Y+  KDRPFFP 
Sbjct: 3   LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV+ M SGPV   V +G   +   R ++G+T+P  +  GTIR  + I +G N IHGSDS+
Sbjct: 63  LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122

Query: 123 KTALEEISYWFARNEII 139
           K+A +EIS WF   E++
Sbjct: 123 KSAEKEISLWFKPEELV 139


>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
           seattle structural genomics center for infectious
           disease, babesiosis; 2.50A {Babesia bovis T2BO}
          Length = 156

 Score =  146 bits (370), Expect = 1e-36
 Identities = 53/137 (38%), Positives = 78/137 (56%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +E+T+ M+KPD V+R LIG I+K  E  GL ++AAKF           Y  HKD+PFF +
Sbjct: 9   MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKD 68

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           L   +  GPVF  + +G EAI   R ++G T P ++  GTIR  +G+    N +H S S 
Sbjct: 69  LCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSA 128

Query: 123 KTALEEISYWFARNEII 139
           + A  E + WF   +++
Sbjct: 129 EDAARECALWFTPEQLV 145


>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
           metal-binding, phosphoprotein, nucleotide metabolism,
           cytoplasm, magnesium; 2.0A {Bacillus anthracis}
          Length = 148

 Score =  145 bits (368), Expect = 3e-36
 Identities = 60/137 (43%), Positives = 84/137 (61%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +EKTF M+KPD V+R  IG IV   E  G  +V AK   +  + A   Y  H+++PFF E
Sbjct: 1   MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV  + SGPVF  V +GE  +   R +MG T P +A  GTIR  +G+++ +N IHGSDSL
Sbjct: 61  LVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSL 120

Query: 123 KTALEEISYWFARNEII 139
           ++A  EI  +F   E++
Sbjct: 121 ESAEREIGIFFKEEELV 137


>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
           transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
          Length = 149

 Score =  145 bits (366), Expect = 4e-36
 Identities = 52/136 (38%), Positives = 78/136 (57%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +E+TF MIKPD V+R LIG ++   E  G  +   K   + R  AE  Y     + FF  
Sbjct: 1   MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV  ++SGPV   + +G+  +   R+++G T+P  +  GTIR  + I IG N IHGSDS+
Sbjct: 61  LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120

Query: 123 KTALEEISYWFARNEI 138
           ++A +EI+ WF    +
Sbjct: 121 ESARKEIALWFPDGPV 136


>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
           sandwich, ATP-binding, cytoplasm, magnesium,
           metal-binding, mitochondrion; 3.10A {Saccharomyces
           cerevisiae}
          Length = 161

 Score =  144 bits (365), Expect = 6e-36
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
            E+TF  +KPD V+R L+  I+   E  G  +VA K    + K  E  Y  H  +PFFP+
Sbjct: 13  TERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPK 72

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           +V  M SGP+   V +G++ + + R ++G T+P  +  GTIR  +GI +G N  HGSDS+
Sbjct: 73  MVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSV 132

Query: 123 KTALEEISYWFARNEII 139
            +A  EI+ WF + E++
Sbjct: 133 DSAEREINLWFKKEELV 149


>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
           {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
          Length = 153

 Score =  144 bits (364), Expect = 7e-36
 Identities = 47/137 (34%), Positives = 75/137 (54%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
           +E+T+ M+KPD ++R L+G I+   E  G  ++  K     ++ AE+ Y     + FFP 
Sbjct: 5   VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 64

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           L++ + SGPV     +G   ++  R+++G TDP +A  GTIR    +  G N +HGSDS 
Sbjct: 65  LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 124

Query: 123 KTALEEISYWFARNEII 139
           +    EI  WF   E+ 
Sbjct: 125 ENGKREIGLWFKEGELC 141


>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
           nucleotide binding, ATP-binding, magnesium,
           metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
           mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
           3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
           2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
           3gpa_A* ...
          Length = 146

 Score =  140 bits (354), Expect = 9e-35
 Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 1/137 (0%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRK-QAEDFYLIHKDRPFFP 61
           +++T  +IKPDA +R+L+  I+  +E     +V+ KF     +   E  Y  H ++ +F 
Sbjct: 6   LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65

Query: 62  ELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDS 121
           +    M+SGP+   V +G +AISK R + G+T+P  +  GTIR      I EN IH SDS
Sbjct: 66  DNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS 125

Query: 122 LKTALEEISYWFARNEI 138
             +A++EIS WF   ++
Sbjct: 126 EDSAVDEISIWFPETKM 142


>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
           2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
           2az1_A 2zua_A
          Length = 164

 Score =  137 bits (346), Expect = 9e-34
 Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 2/139 (1%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
            E+TF M+KPD V+R LIG IV  LE  GL +V  KF  ++ + A + Y  H+D+PFF  
Sbjct: 8   DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDG 67

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
           LV  + SGPVF  V +G +A  + R++MG TD + A  GTIR  YG  +G N IHGSD  
Sbjct: 68  LVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHE 127

Query: 123 KTALE--EISYWFARNEII 139
                  EI+ +F  +E++
Sbjct: 128 DEGANEREIALFFDDDELV 146


>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
           hexamer structure, ATP-binding, cytoplasm, magnesium,
           metal-binding; HET: TNM TNV; 1.65A {Dictyostelium
           discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A
           1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A*
           1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A*
           1npk_A ...
          Length = 155

 Score =  137 bits (345), Expect = 1e-33
 Identities = 53/139 (38%), Positives = 80/139 (57%)

Query: 1   MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
           +  E+TF  +KPD V R L+G I+   E  G  +V  K     +  AE  Y  HK+RPFF
Sbjct: 6   VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 65

Query: 61  PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
             LV  + SGPV   V +G+  ++  R ++G T+P  +  G+IR  +G+ +G N I GSD
Sbjct: 66  GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSD 125

Query: 121 SLKTALEEISYWFARNEII 139
           S+++A  EI+ WF   E++
Sbjct: 126 SVESANREIALWFKPEELL 144


>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
           genomics, NPPSFA; HET: GDP; 1.70A {Pyrococcus horikoshii
           OT3} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A*
           2dya_A*
          Length = 160

 Score =  135 bits (340), Expect = 4e-33
 Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 3/140 (2%)

Query: 3   IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
            E+T  +IKPDAV R LIG I+   E  GL +V  K  W++R+ AE  Y  H+++PFF  
Sbjct: 7   TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKA 66

Query: 63  LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGE---NSIHGS 119
           L+  +   PV + VL+G  A+   R++ G TDPK A  GTIR  +G+ + +   N IH S
Sbjct: 67  LIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHAS 126

Query: 120 DSLKTALEEISYWFARNEII 139
           DS ++A  EIS +F   E+ 
Sbjct: 127 DSKESAEREISLFFKPEELF 146


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.069
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 13/37 (35%)

Query: 96  KKALKGTIRNKYGISIGENSIHGSDS-----LKTALE 127
           K+ALK     K   S+    ++  DS     +K  +E
Sbjct: 19  KQALK-----KLQASL---KLYADDSAPALAIKATME 47



 Score = 31.5 bits (70), Expect = 0.078
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 6/31 (19%)

Query: 75  QVLKGEEAISKNREVMGDTD--PKKALKGTI 103
           Q LK  +A  K   +  D D  P  A+K T+
Sbjct: 20  QALKKLQASLK---LYAD-DSAPALAIKATM 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.0 bits (62), Expect = 0.80
 Identities = 26/160 (16%), Positives = 40/160 (25%), Gaps = 60/160 (37%)

Query: 7   FSMIKPDAVKRNL-IGS-------------IVKELEDYGLCVVAAK-----FCWMN---- 43
           FS  K     R L + S             I K+L    +   A       +   +    
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468

Query: 44  RKQAEDFYLIHKDRPFFPELVQAMISGPVFLQVLKGEEAISKNREVMG-----DTDPKKA 98
           R  +    +          +V  +I  PV       E                D  P   
Sbjct: 469 RVLSGS--IS-------ERIVDCIIRLPVKW-----ETTT-----QFKATHILDFGP-GG 508

Query: 99  LKG----TIRNK--YGISIGENSIHGSDSLKTALE-EISY 131
             G    T RNK   G+ +    I     L    + +  +
Sbjct: 509 ASGLGVLTHRNKDGTGVRV----IVAGT-LDINPDDDYGF 543


>3b9e_A Chitinase A; TIM-barrel, glycosidase, hydrolase; 1.70A {Vibrio
           harveyi} PDB: 3b9a_A* 3b9d_A 3b8s_A
          Length = 584

 Score = 27.9 bits (61), Expect = 0.96
 Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 2/65 (3%)

Query: 5   KTFSMIKPDAVKRNLIGSIVKELEDYGLC--VVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
             F        +   + S+ K L+ +     V            A D      D P +  
Sbjct: 258 DPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWMFPGGGGAAADKGDPVNDGPAYIA 317

Query: 63  LVQAM 67
           L++ +
Sbjct: 318 LMREL 322


>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond,
          HOST- virus interaction, immune response,
          immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
          Length = 70

 Score = 25.6 bits (56), Expect = 4.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 19 LIGSIVKELEDYGLCVVAAKFCWMNRKQAE 48
          ++G +   L   GL +  +      R+QAE
Sbjct: 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQAE 42


>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding,
           T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP:
           b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
          Length = 573

 Score = 24.6 bits (53), Expect = 8.4
 Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 33/101 (32%)

Query: 20  IGSIVKELEDYGLCVVAA---------KFCWMNRKQAEDFYLIHKDRPFFPELVQAMISG 70
           I  +  EL   G  V+AA         KF      QA  F+L+H   P            
Sbjct: 458 IAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPL----------- 506

Query: 71  PVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISI 111
                    E     ++  +       A +G I+   G+  
Sbjct: 507 ---------EHCEQSDKRGI----YAAARRGEIKGFTGVDD 534


>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
           2.31A {Aquifex aeolicus}
          Length = 546

 Score = 24.6 bits (53), Expect = 8.5
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 16/92 (17%)

Query: 20  IGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPELVQAMISGPVFLQVLKG 79
           +G +  E+  +   V+ A      R        + ++  F    V A +           
Sbjct: 433 VGFVASEIVKHNGVVICA-LVSPYRSARNQVRNMMEEGKFIEVFVDAPV----------- 480

Query: 80  EEAISKNREVMGDTDPKKALKGTIRNKYGISI 111
           E    ++ + +     KKA +G I+   G+  
Sbjct: 481 EVCEERDVKGLY----KKAKEGLIKGFTGVDD 508


>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
           two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
           a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
           1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
          Length = 471

 Score = 24.5 bits (53), Expect = 9.7
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 81  EAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLKTALE 127
           E   +N E+ G  +P +AL  T+R      + ENS+  +D       
Sbjct: 15  EFFKRNPELAGFPNPARALYQTVRE-----LIENSLDATDVHGILPN 56


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,232,652
Number of extensions: 51687
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 34
Length of query: 140
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 57
Effective length of database: 3,680,978
Effective search space: 209815746
Effective search space used: 209815746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)