RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780390|ref|YP_003064803.1| nucleoside diphosphate kinase
[Candidatus Liberibacter asiaticus str. psy62]
(140 letters)
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 155 bits (394), Expect = 1e-39
Identities = 59/137 (43%), Positives = 88/137 (64%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+TF MIKPD V+R L+G I+ E G + A K ++++ AE Y H+++PFFP
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV+ + SGPV VL+G +++ R++MG T PK AL GTIR + +I EN IHGS +L
Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120
Query: 123 KTALEEISYWFARNEII 139
+ A EI+ +F E++
Sbjct: 121 EDAQREIALFFRPEELL 137
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 154 bits (390), Expect = 3e-39
Identities = 61/137 (44%), Positives = 86/137 (62%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+TF IKPD V+R L+G I+K E G +VA KF + + + Y+ KDRPFFP
Sbjct: 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV+ M SGPV V +G + R ++G+T+P + GTIR + I +G N IHGSDS+
Sbjct: 63 LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122
Query: 123 KTALEEISYWFARNEII 139
K+A +EIS WF E++
Sbjct: 123 KSAEKEISLWFKPEELV 139
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 152 bits (384), Expect = 1e-38
Identities = 69/137 (50%), Positives = 97/137 (70%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
IE+T S+IKPD +++ +IG I+ E+ GL VA + +++ QAE FY +HK RPFF +
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LVQ MISGPV L VL+GE A+ NR++MG T+P +A +GTIR + SI +N++HGSDSL
Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121
Query: 123 KTALEEISYWFARNEII 139
+ A EI+Y+F EI
Sbjct: 122 ENAKIEIAYFFRETEIH 138
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 151 bits (382), Expect = 2e-38
Identities = 53/180 (29%), Positives = 76/180 (42%), Gaps = 43/180 (23%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKD------ 56
+EKT ++KPDAV R L+ I+ + GL +VA K + ++ E FY ++
Sbjct: 2 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAG 61
Query: 57 ---------------------------RPFFPELVQAMISGPVFLQVLKGEEAISKNREV 89
R LV+ M SGP + VLKG A+ R++
Sbjct: 62 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKL 121
Query: 90 MGDTDPKKALKGTIRNKYGISIGE----------NSIHGSDSLKTALEEISYWFARNEII 139
+G T P A GTIR Y I + N +H SDS A EI +WF E++
Sbjct: 122 VGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVL 181
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 147 bits (373), Expect = 3e-37
Identities = 54/136 (39%), Positives = 84/136 (61%)
Query: 4 EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63
E+TF +KPD V+R L+G IV+ E G +VA K + + + Y ++RPF+ L
Sbjct: 5 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRL 64
Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLK 123
V+ M SGPV V +G + + +R ++G T+P A GTIR + I +G+N IHGSDS++
Sbjct: 65 VKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVE 124
Query: 124 TALEEISYWFARNEII 139
+A EI+ WF +E++
Sbjct: 125 SARREIALWFRADELL 140
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 147 bits (372), Expect = 4e-37
Identities = 47/137 (34%), Positives = 74/137 (54%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
E+T +KPD V+R L+G +++ E G +V K + Y + +PF+P
Sbjct: 5 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPA 64
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
L++ M SGPV V +G + +R ++G TD +A GTIR + + I N IH SDS+
Sbjct: 65 LIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSV 124
Query: 123 KTALEEISYWFARNEII 139
+ A EI WF +E++
Sbjct: 125 EGAQREIQLWFQSSELV 141
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 145 bits (367), Expect = 1e-36
Identities = 56/137 (40%), Positives = 79/137 (57%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+TF IKPD V+R LI I+ E G +V K ++ A+ Y K+RPFF
Sbjct: 3 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNG 62
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
L + SGPV V +GE I+ R+++G TDP+K+ GTIR + +G N IHGSD
Sbjct: 63 LCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGP 122
Query: 123 KTALEEISYWFARNEII 139
+TA +EI WF E++
Sbjct: 123 ETAKDEIKLWFKPEELV 139
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 144 bits (364), Expect = 3e-36
Identities = 47/137 (34%), Positives = 75/137 (54%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+T+ M+KPD ++R L+G I+ E G ++ K ++ AE+ Y + FFP
Sbjct: 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 64
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
L++ + SGPV +G ++ R+++G TDP +A GTIR + G N +HGSDS
Sbjct: 65 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 124
Query: 123 KTALEEISYWFARNEII 139
+ EI WF E+
Sbjct: 125 ENGKREIGLWFKEGELC 141
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 144 bits (364), Expect = 3e-36
Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 4 EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63
E+T +IKPD ++R LIG I+ +E GL + A + ++ + A Y H+ +PFF L
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61
Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALK-GTIRNKYGISIGENSIHGSDSL 122
++ + SGPV +++G AI+ R++ G TDP +A GTIR + + N +HGSDS
Sbjct: 62 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSA 121
Query: 123 KTALEEISYWF 133
++A EI+ WF
Sbjct: 122 ESAQREIALWF 132
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 143 bits (362), Expect = 5e-36
Identities = 51/137 (37%), Positives = 83/137 (60%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+EK+F MIKPD V+R L+G+I+K E G ++A K + ++ Y D+PFF
Sbjct: 1 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 60
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV + GPV V +G + + + R+++G+T+P + GTIR + + + +N IHGSDS+
Sbjct: 61 LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSV 120
Query: 123 KTALEEISYWFARNEII 139
+A +EI+ WF E+
Sbjct: 121 ASANKEINIWFKAEELT 137
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 143 bits (361), Expect = 6e-36
Identities = 52/136 (38%), Positives = 78/136 (57%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
+E+TF MIKPD V+R LIG ++ E G + K + R AE Y + FF
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSL 122
LV ++SGPV + +G+ + R+++G T+P + GTIR + I IG N IHGSDS+
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120
Query: 123 KTALEEISYWFARNEI 138
++A +EI+ WF +
Sbjct: 121 ESARKEIALWFPDGPV 136
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 139 bits (352), Expect = 7e-35
Identities = 53/139 (38%), Positives = 80/139 (57%)
Query: 1 MVIEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFF 60
+ E+TF +KPD V R L+G I+ E G +V K + AE Y HK+RPFF
Sbjct: 1 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFF 60
Query: 61 PELVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSD 120
LV + SGPV V +G+ ++ R ++G T+P + G+IR +G+ +G N I GSD
Sbjct: 61 GGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSD 120
Query: 121 SLKTALEEISYWFARNEII 139
S+++A EI+ WF E++
Sbjct: 121 SVESANREIALWFKPEELL 139
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 138 bits (349), Expect = 2e-34
Identities = 61/138 (44%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
Query: 4 EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63
E+TF M+KPD V+R LIG IV LE GL +V KF ++ + A + Y H+D+PFF L
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 62
Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLK 123
V + SGPVF V +G +A + R++MG TD + A GTIR YG +G N IHGSD
Sbjct: 63 VSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED 122
Query: 124 TALE--EISYWFARNEII 139
EI+ +F +E++
Sbjct: 123 EGANEREIALFFDDDELV 140
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 134 bits (339), Expect = 2e-33
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 3 IEKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPE 62
E+T +IKPDAV R LIG I+ E GL +V K W++R+ AE Y H+++PFF
Sbjct: 2 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKA 61
Query: 63 LVQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGE---NSIHGS 119
L+ + PV + VL+G A+ R++ G TDPK A GTIR +G+ + + N IH S
Sbjct: 62 LIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHAS 121
Query: 120 DSLKTALEEISYWFARNEII 139
DS ++A EIS +F E+
Sbjct: 122 DSKESAEREISLFFKPEELF 141
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 133 bits (336), Expect = 5e-33
Identities = 58/136 (42%), Positives = 79/136 (58%)
Query: 4 EKTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63
E+TF M+KPD V+RNL+G +VK E GL + AK +++ A Y PFF L
Sbjct: 2 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGL 61
Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLK 123
V SGPVF V +G A + R+++G T+P A GTIR +G+S G N+IHGSDS
Sbjct: 62 VGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAG 121
Query: 124 TALEEISYWFARNEII 139
+A +EI +F E
Sbjct: 122 SAAKEIGAFFGGGEAA 137
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 122 bits (307), Expect = 1e-29
Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 5 KTFSMIKPDAVKRNLIGSIVKELEDYGLCVVAAKFC-WMNRKQAEDFYLIHKDRPFFPEL 63
+T +IKPDA +R+L+ I+ +E +V+ KF R E Y H ++ +F +
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61
Query: 64 VQAMISGPVFLQVLKGEEAISKNREVMGDTDPKKALKGTIRNKYGISIGENSIHGSDSLK 123
M+SGP+ V +G +AISK R + G+ GTIR I EN IH SDS
Sbjct: 62 CDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDSED 117
Query: 124 TALEEISYWF 133
+A++EIS WF
Sbjct: 118 SAVDEISIWF 127
>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain
{Serratia marcescens [TaxId: 615]}
Length = 358
Score = 25.9 bits (56), Expect = 1.4
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 5 KTFSMIKPDAVKRNLIGSIVKELEDYGLC-VVAAKFCWMNRKQAEDFYLIHKDRPFFPEL 63
F + + +GS+ + L+ + V + + K A +D + L
Sbjct: 147 DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLL 206
Query: 64 VQAMIS 69
++ + +
Sbjct: 207 MKELRA 212
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 24.4 bits (52), Expect = 4.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 81 EAISKNREVMGDTDPKKALKGTIRN 105
E +N E+ G +P +AL T+R
Sbjct: 5 EFFKRNPELAGFPNPARALYQTVRE 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,391
Number of extensions: 22748
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 23
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)