HHsearch alignment for GI: 254780391 and conserved domain: PRK05728
>PRK05728 DNA polymerase III subunit chi; Validated.
Probab=100.00 E-value=2e-41 Score=270.15 Aligned_cols=135 Identities=30% Similarity=0.479 Sum_probs=120.4
Q ss_pred CCEEEEEECCCC----HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 982799631674----8999999999999779849998299899999999852188233313322477765444220699
Q gi|254780391|r 1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL 76 (141)
Q Consensus 1 Mt~v~FY~l~~~----~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~ 76 (141)
T Consensus 1 Mt~i~FY~L~~~~~~~~~~~~c~L~~k~~~~g~~i~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~---~~~~~PI~ 77 (143)
T PRK05728 1 MTRADFYHLTRDTLSALEQLLCRLAEKALRAGWRVLVQCEDEEQAEALDEALWTFDDESFVPHGLAGEG---PAAGQPVL 77 (143)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEE
T ss_conf 987899975798666899999999999998699189993999999999999848997321344446888---76789989
Q ss_pred EECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r 77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 77 i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
T Consensus 78 i~~~~~-~~~~~~~vLinl~~~~p~~~~~f~Rvie~v-~~d~~~~~~aR~r~k~yk~~G~~l~y 139 (143)
T PRK05728 78 LAWPGN-RNGAHRDLLINLAAAVPAFAAAFERVVDFV-GYDEAALQAARERWKAYRAAGYNLTY 139 (143)
T ss_pred EECCCC-CCCCCCEEEEECCCCCCCHHHHCCEEEEEE-CCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 965888-887774699989988864101017899994-89989999999999999988997635