HHsearch alignment for GI: 254780391 and conserved domain: PRK05728

>PRK05728 DNA polymerase III subunit chi; Validated.
Probab=100.00  E-value=2e-41  Score=270.15  Aligned_cols=135  Identities=30%  Similarity=0.479  Sum_probs=120.4

Q ss_pred             CCEEEEEECCCC----HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             982799631674----8999999999999779849998299899999999852188233313322477765444220699
Q gi|254780391|r    1 MRTLLFYRFKND----WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVL   76 (141)
Q Consensus         1 Mt~v~FY~l~~~----~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~   76 (141)
T Consensus         1 Mt~i~FY~L~~~~~~~~~~~~c~L~~k~~~~g~~i~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~---~~~~~PI~   77 (143)
T PRK05728          1 MTRADFYHLTRDTLSALEQLLCRLAEKALRAGWRVLVQCEDEEQAEALDEALWTFDDESFVPHGLAGEG---PAAGQPVL   77 (143)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEE
T ss_conf             987899975798666899999999999998699189993999999999999848997321344446888---76789989


Q ss_pred             EECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             8328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r   77 LTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV  140 (141)
Q Consensus        77 i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~  140 (141)
T Consensus        78 i~~~~~-~~~~~~~vLinl~~~~p~~~~~f~Rvie~v-~~d~~~~~~aR~r~k~yk~~G~~l~y  139 (143)
T PRK05728         78 LAWPGN-RNGAHRDLLINLAAAVPAFAAAFERVVDFV-GYDEAALQAARERWKAYRAAGYNLTY  139 (143)
T ss_pred             EECCCC-CCCCCCEEEEECCCCCCCHHHHCCEEEEEE-CCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             965888-887774699989988864101017899994-89989999999999999988997635