HHsearch alignment for GI: 254780391 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=91.42 E-value=1.2 Score=24.57 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 7489999999999997798499982998999999998521
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~ 50 (141)
T Consensus 11 ~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~ 50 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK 50 (131)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 6999999999999997899099997889999999999955