Query gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs 108 out of 530
Neff 7.4
Searched_HMMs 33803
Date Wed Jun 1 12:40:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780391.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1em8_A DNA polymerase III CHI 100.0 4.5E-41 1.4E-45 267.7 15.4 135 1-140 1-143 (147)
2 >1nkt_A Preprotein translocase 94.4 0.14 4.1E-06 29.8 6.2 111 10-121 16-141 (160)
3 >1c4o_A DNA nucleotide excisio 94.2 0.43 1.3E-05 26.8 9.8 91 7-97 9-107 (255)
4 >2qsd_A Uncharacterized conser 89.5 0.59 1.7E-05 26.0 4.5 55 74-128 7-61 (103)
5 >2fsf_A Preprotein translocase 86.7 2.1 6.2E-05 22.7 5.9 57 6-62 10-68 (191)
6 >2jgn_A DBX, DDX3, ATP-depende 86.4 2.5 7.3E-05 22.2 7.5 85 11-96 30-122 (154)
7 >2oca_A DAR protein, ATP-depen 86.0 1.5 4.6E-05 23.5 4.9 85 12-96 42-135 (221)
8 >3jux_A Protein translocase su 85.0 1.9 5.7E-05 22.9 5.0 121 11-131 17-162 (171)
9 >3i5x_A ATP-dependent RNA heli 84.9 2.9 8.6E-05 21.8 7.2 80 17-96 25-117 (185)
10 >1tf5_A Preprotein translocase 84.1 3 8.7E-05 21.8 5.6 52 11-62 17-68 (151)
11 >2i4i_A ATP-dependent RNA heli 83.5 3.4 9.9E-05 21.5 6.0 86 10-96 14-107 (139)
12 >1hv8_A Putative ATP-dependent 83.0 3.5 0.0001 21.3 8.9 107 12-121 14-139 (156)
13 >1fuk_A Eukaryotic initiation 80.2 4.4 0.00013 20.7 7.7 105 11-117 15-138 (165)
14 >2eyq_A TRCF, transcription-re 79.4 4.7 0.00014 20.6 6.4 121 13-134 14-156 (158)
15 >1wp9_A ATP-dependent RNA heli 79.2 4.1 0.00012 21.0 4.9 86 11-96 16-119 (168)
16 >2p6n_A ATP-dependent RNA heli 71.6 7.6 0.00023 19.3 7.7 118 12-134 41-177 (191)
17 >1t5i_A C_terminal domain of A 68.5 8.9 0.00026 18.9 7.2 83 11-95 16-106 (172)
18 >1xti_A Probable ATP-dependent 67.3 9.4 0.00028 18.8 8.7 118 11-132 16-152 (172)
19 >3i32_A Heat resistant RNA dep 64.3 11 0.00032 18.4 11.3 107 11-119 13-138 (180)
20 >2j0s_A ATP-dependent RNA heli 64.3 11 0.00032 18.4 8.8 113 13-132 19-152 (166)
21 >2v6i_A RNA helicase; membrane 61.5 12 0.00036 18.1 4.2 82 20-101 23-108 (154)
22 >2ipc_A Preprotein translocase 60.5 13 0.00037 18.0 4.7 44 7-50 13-56 (236)
23 >2v1x_A ATP-dependent DNA heli 60.3 13 0.00038 18.0 9.0 86 11-96 13-108 (138)
24 >2eyq_A TRCF, transcription-re 59.7 7.6 0.00023 19.3 2.8 36 16-51 17-52 (103)
25 >3gfp_A DEAD box protein 5; mR 59.1 13 0.00039 17.9 10.3 83 12-96 23-113 (189)
26 >1s2m_A Putative ATP-dependent 55.0 16 0.00046 17.4 7.2 118 10-134 15-153 (173)
27 >2wv9_A Flavivirin protease NS 52.4 17 0.00051 17.2 3.7 76 20-95 25-104 (159)
28 >2au3_A DNA primase; zinc ribb 49.2 19 0.00057 16.9 4.1 38 102-140 59-96 (125)
29 >2jlq_A Serine protease subuni 48.0 20 0.0006 16.8 4.0 60 21-80 25-86 (158)
30 >1yks_A Genome polyprotein [co 46.7 21 0.00063 16.6 7.8 85 21-105 25-113 (157)
31 >2is6_A DNA helicase II; hydro 46.6 21 0.00063 16.6 8.0 88 3-95 34-127 (232)
32 >2d7d_A Uvrabc system protein 46.5 21 0.00063 16.6 13.8 110 10-119 12-144 (187)
33 >3eaq_A Heat resistant RNA dep 46.5 21 0.00063 16.6 9.0 84 10-95 15-106 (184)
34 >2jmk_A Hypothetical protein T 45.6 9.6 0.00028 18.7 1.4 28 113-140 82-109 (111)
35 >1gku_B Reverse gyrase, TOP-RG 44.2 19 0.00055 17.0 2.7 69 3-80 2-76 (249)
36 >1xkn_A Putative peptidyl-argi 42.9 24 0.00072 16.3 3.4 33 15-48 26-58 (104)
37 >1oyw_A RECQ helicase, ATP-dep 42.3 25 0.00073 16.2 7.3 85 10-96 11-103 (133)
38 >2z0m_A 337AA long hypothetica 38.4 26 0.00078 16.1 2.7 110 6-122 8-136 (145)
39 >2vbc_A Dengue 4 NS3 FULL-leng 38.3 29 0.00085 15.8 4.2 75 21-96 25-103 (119)
40 >2db3_A ATP-dependent RNA heli 32.5 36 0.0011 15.3 9.4 122 12-138 16-156 (163)
41 >1t6t_1 Putative protein; stru 32.4 36 0.0011 15.3 3.8 39 100-139 56-94 (118)
42 >3h1t_A Type I site-specific r 30.8 38 0.0011 15.1 6.3 74 24-97 65-156 (220)
43 >3fmp_B ATP-dependent RNA heli 25.6 17 0.0005 17.2 0.0 78 19-96 324-409 (479)
44 >2i7x_A Protein CFT2; polyaden 24.5 49 0.0015 14.4 3.6 40 12-51 7-46 (444)
45 >2f1r_A Molybdopterin-guanine 24.4 50 0.0015 14.4 3.6 59 1-59 1-61 (121)
46 >1yz4_A DUSP15, dual specifici 23.0 53 0.0016 14.2 4.0 25 13-37 69-93 (160)
47 >1wrm_A Dual specificity phosp 22.8 53 0.0016 14.2 3.8 26 13-38 68-93 (165)
48 >2wv9_A Flavivirin protease NS 22.4 54 0.0016 14.2 5.7 48 13-60 24-71 (243)
49 >1fuu_A Yeast initiation facto 22.4 21 0.00063 16.6 0.0 82 27-108 258-349 (394)
50 >2q05_A Late protein H1, dual 21.8 56 0.0017 14.1 3.8 28 87-114 72-99 (195)
51 >2esb_A Dual specificity prote 21.6 56 0.0017 14.1 3.8 24 14-37 83-106 (188)
52 >1b73_A Glutamate racemase; is 21.5 57 0.0017 14.1 3.7 39 13-51 47-85 (135)
No 1
>>1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli} (A:)
Probab=100.00 E-value=4.5e-41 Score=267.65 Aligned_cols=135 Identities=19% Similarity=0.355 Sum_probs=122.4
Q ss_pred CCEEEEEECCC--------CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98279963167--------4899999999999977984999829989999999985218823331332247776544422
Q gi|254780391|r 1 MRTLLFYRFKN--------DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72 (141)
Q Consensus 1 Mt~v~FY~l~~--------~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~ 72 (141)
||+|+||+|.+ ....++|+|++|++++|+|++|+|+|.++++.||++||+|+++|||||++.+++ ..+.
T Consensus 1 Mt~v~FY~L~~~~~~~~l~~~~~~~c~L~~k~~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFiPH~~~~~~---~~~~ 77 (147)
T 1em8_A 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---PRGG 77 (147)
T ss_dssp CEEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCS---STTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCC
T ss_conf 9846999857986566566799999999999997699799985999999999999629999866189868888---7778
Q ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06998328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r 73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 73 ~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
+||+|+++.+.++.+. ++|||+++..|+++++|+||+||| ++|++.|+.||+|||+||++||++++
T Consensus 78 ~PV~i~~~~~~~~~~~-~vliNl~~~~~~~~~~f~rvie~v-~~d~~~~~~aR~r~k~Yr~~G~~l~~ 143 (147)
T 1em8_A 78 APVEIAWPQKRSSSRR-DILISLRTSFADFATAFTEVVDFV-PYEDSLKQLARERYKAYRVAGFNLNT 143 (147)
T ss_dssp CSEEEECTTSCCCSCC-SEEEECCSSCCGGGGGCSEEEEEE-CSSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEECCCCCCCCCC-EEEEECCCCCCCHHCCCCEEEEEE-CCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 8878747877788777-199989988953110478899997-98989999999999999987997411
No 2
>>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} (A:427-523,A:579-641)
Probab=94.38 E-value=0.14 Score=29.80 Aligned_cols=111 Identities=10% Similarity=0.022 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCCEEEEECCCCCCC
Q ss_conf 67489999999999997798499982998999999998521882333133224777654----44220699832866789
Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD----FSSFQPVLLTISSLNAN 85 (141)
Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~----~~~~~PV~i~~~~~~~~ 85 (141)
.+.....++.++.+....|.+++|+|.+.++++.|-+.|........+=|+-.....-. .-..-.|++++..-. .
T Consensus 16 ~~~k~~~~~~~i~~~~~~~~kvlIf~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~vlv~t~~~~-~ 94 (160)
T 1nkt_A 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATNMAG-R 94 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTCEEEEETTCS-T
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCC-C
T ss_conf 899999999999999964997799840198899999999876981532100104656767862789871899722335-8
Q ss_pred CCCEEEEEECC--CCCCCHHHC------C---CEEEEEECCCCHHHH
Q ss_conf 98199998168--778211311------7---579999759898999
Q gi|254780391|r 86 TSTIRFLVDEA--SMHIGDVDY------Y---EKVVFIINTDDQGSL 121 (141)
Q Consensus 86 ~~~~~~linl~--~~~p~~~~~------f---~rvieiv~~~d~~~~ 121 (141)
+-++..+|+.. .....+.++ . ..++-++...|....
T Consensus 95 Gid~~~Vi~~d~p~~~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~ 141 (160)
T 1nkt_A 95 GTDGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMR 141 (160)
T ss_dssp TCCSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHHH
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEHHHCCHHHHH
T ss_conf 74773896454431488999872653468999744540231448998
No 3
>>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein; HET: DNA BOG; 1.50A {Thermus thermophilus} (A:410-664)
Probab=94.19 E-value=0.43 Score=26.84 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=67.0
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECC
Q ss_conf 63167489999999999997798499982998999999998521882333133224777654------442206998328
Q gi|254780391|r 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTIS 80 (141)
Q Consensus 7 Y~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~ 80 (141)
++-.......+..++.+....+.+++|+|.....++.|-++|+........=|+-.....-. ......|+++++
T Consensus 9 ~~~~~~~~~~ll~~i~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~~hg~~~~~~R~~i~~~F~~~~~~vLVaT~ 88 (255)
T 1c4o_A 9 VKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 88 (255)
T ss_dssp EECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 25444646899999999984598089995573069999999987798246426665403567788775068637998531
Q ss_pred --CCCCCCCCEEEEEECCC
Q ss_conf --66789981999981687
Q gi|254780391|r 81 --SLNANTSTIRFLVDEAS 97 (141)
Q Consensus 81 --~~~~~~~~~~~linl~~ 97 (141)
.+..+-.++..+|+..+
T Consensus 89 ~l~~GiDi~~v~~VI~~d~ 107 (255)
T 1c4o_A 89 LLREGLDIPEVSLVAILDA 107 (255)
T ss_dssp CCCTTCCCTTEEEEEETTT
T ss_pred CCCCCCCCCCCCEEEEECC
T ss_conf 4554311233428998526
No 4
>>2qsd_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, nysgrc; 2.50A {Idiomarina loihiensis} (A:64-166)
Probab=89.53 E-value=0.59 Score=26.03 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=44.7
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 6998328667899819999816877821131175799997598989999999999
Q gi|254780391|r 74 PVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHW 128 (141)
Q Consensus 74 PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rw 128 (141)
-|-++......+...-++.||++.=.|..|..+-+...+|-.+-.++|+.|+.+|
T Consensus 7 ~I~l~~~~~~~~~~~kL~FVNLGGY~~~~~~E~H~f~LvVA~~~~eAK~~Ak~~~ 61 (103)
T 2qsd_A 7 RIHLTSEAHEKPEEKRLYFVNFGGYFPNKLAEYHDFTVVVADSPQSAKQLARAQF 61 (103)
T ss_dssp EEEEESCC---CCSSEEEEEECC--------CCCSEEEEEESSHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHEEEEEEECCHHHHHHHHHHHH
T ss_conf 8999866777787772799980574899510313655899789999999999886
No 5
>>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* (A:408-598)
Probab=86.69 E-value=2.1 Score=22.70 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=44.7
Q ss_pred EEECC--CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 96316--7489999999999997798499982998999999998521882333133224
Q gi|254780391|r 6 FYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 (141)
Q Consensus 6 FY~l~--~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~ 62 (141)
+|... +....++..++.+....+.|++|+|++.+.++.|-++|=+..-....=|+-.
T Consensus 10 ~~~~~~~~~K~~~L~~ll~~~~~~~~kviVF~~s~~~~~~l~~~L~~~~~~~~~lhg~~ 68 (191)
T 2fsf_A 10 DLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKF 68 (191)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 27677358999999999999997089669974688889999999997485688997751
No 6
>>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, acetylation, ATP-binding, DNA-binding; 1.91A {Homo sapiens} (A:1-154)
Probab=86.36 E-value=2.5 Score=22.25 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECCC--C
Q ss_conf 7489999999999997798499982998999999998521882333133224777654------4422069983286--6
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTISS--L 82 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~~--~ 82 (141)
.+....+.+++.+.. .+.+++|+|.+.++++.+-..|.........=|+-.....-. .....+|+++++. .
T Consensus 30 ~~k~~~l~~~l~~~~-~~~~~iVF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~~~~~f~~~~~~vlv~Td~~~~ 108 (154)
T 2jgn_A 30 SDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (154)
T ss_dssp GGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred HHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHCC
T ss_conf 789999999998508-8997899984663125677766532786321002210379999997862598437742100010
Q ss_pred CCCCCCEEEEEECC
Q ss_conf 78998199998168
Q gi|254780391|r 83 NANTSTIRFLVDEA 96 (141)
Q Consensus 83 ~~~~~~~~~linl~ 96 (141)
..+..++.++|+.+
T Consensus 109 G~d~~~v~~Vi~~~ 122 (154)
T 2jgn_A 109 GLDISNVKHVINFD 122 (154)
T ss_dssp --CCCSBSEEEESS
T ss_pred HHEECCCCEEEEEC
T ss_conf 10342654356606
No 7
>>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} (A:290-510)
Probab=85.96 E-value=1.5 Score=23.49 Aligned_cols=85 Identities=7% Similarity=-0.046 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-------CCCCCEEEEECC--CC
Q ss_conf 489999999999997798499982998999999998521882333133224777654-------442206998328--66
Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD-------FSSFQPVLLTIS--SL 82 (141)
Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~-------~~~~~PV~i~~~--~~ 82 (141)
.....++.++.+....|.+++|+|.....++.|-+.|=........=|+-....... .....-+++++. ..
T Consensus 42 ~k~~~l~~~i~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 121 (221)
T 2oca_A 42 KRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 121 (221)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEEECHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECHHHC
T ss_conf 23467777653333136638999844530001002233444318999678867889999999864888769999053104
Q ss_pred CCCCCCEEEEEECC
Q ss_conf 78998199998168
Q gi|254780391|r 83 NANTSTIRFLVDEA 96 (141)
Q Consensus 83 ~~~~~~~~~linl~ 96 (141)
..+-.++..+|+..
T Consensus 122 Gid~~~~~~VI~~~ 135 (221)
T 2oca_A 122 GISVKNLHHVVLAH 135 (221)
T ss_dssp SCCCCSEEEEEESS
T ss_pred EECCCCCCEEEEEC
T ss_conf 65445578999967
No 8
>>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* (A:441-611)
Probab=85.02 E-value=1.9 Score=22.93 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCCCEEEEECCC--CCC
Q ss_conf 748999999999999779849998299899999999852188233313322477765----44422069983286--678
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG----DFSSFQPVLLTISS--LNA 84 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~----~~~~~~PV~i~~~~--~~~ 84 (141)
+.....+.+++.+....+.+++|+|...+.++.|.+.|=...-..-.=|+-.....- ..-....|+++++. ...
T Consensus 17 ~~k~~~l~~~l~~~~~~~~~~iIF~~~~~~~e~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ilv~T~~~~~G~ 96 (171)
T 3jux_A 17 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNMAGRGT 96 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEHHCCCCC
T ss_conf 99999889999998753883799950566799999999975846877615318788898886238760797100103678
Q ss_pred CCCC--------EEEEEECCCC--CCCHH---------HCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 9981--------9999816877--82113---------1175799997598989999999999999
Q gi|254780391|r 85 NTST--------IRFLVDEASM--HIGDV---------DYYEKVVFIINTDDQGSLEWGRAHWRSL 131 (141)
Q Consensus 85 ~~~~--------~~~linl~~~--~p~~~---------~~f~rvieiv~~~d~~~~~~aR~rwk~y 131 (141)
+... +...+|.... .-.+. .+=.+++-+++..++.......++-+..
T Consensus 97 d~~~v~~V~~~~~~~~i~~d~p~~~~~yiQr~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 162 (171)
T 3jux_A 97 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKV 162 (171)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHH
T ss_pred CCCCCCHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHH
T ss_conf 555551088808976988412642776666505201368987515863158528876210112333
No 9
>>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* (A:302-486)
Probab=84.94 E-value=2.9 Score=21.83 Aligned_cols=80 Identities=6% Similarity=-0.063 Sum_probs=43.6
Q ss_pred HHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCEEEEECCC--CC
Q ss_conf 9999999997--798499982998999999998521882333133224777654---------4422069983286--67
Q gi|254780391|r 17 LLVLLQDEYE--KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD---------FSSFQPVLLTISS--LN 83 (141)
Q Consensus 17 ~~~L~~K~~~--~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~---------~~~~~PV~i~~~~--~~ 83 (141)
+..+...... .+.+++|+|+..+.++.|-++|...-+..+-...+.++-+.. ......|+++++. ..
T Consensus 25 ~~~~~~~~~~~~~~~~~lIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ilv~t~~~~~G 104 (185)
T 3i5x_A 25 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 104 (185)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEHHCCC
T ss_conf 88888888862367747998320135577776554210122110013678727766677765320100015774210046
Q ss_pred CCCCCEEEEEECC
Q ss_conf 8998199998168
Q gi|254780391|r 84 ANTSTIRFLVDEA 96 (141)
Q Consensus 84 ~~~~~~~~linl~ 96 (141)
.+...+..+|+.+
T Consensus 105 id~~~~~~Vi~~~ 117 (185)
T 3i5x_A 105 MDFPNVHEVLQIG 117 (185)
T ss_dssp CCCTTCCEEEEES
T ss_pred CCCCCCCEEEEEC
T ss_conf 5767788899969
No 10
>>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} (A:399-549)
Probab=84.10 E-value=3 Score=21.79 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 7489999999999997798499982998999999998521882333133224
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~ 62 (141)
.+....++.++.+....+.+++|+|...+.++.|-+.|=...-....=|+-.
T Consensus 17 ~~k~~~l~~~i~~~~~~~~~~iIF~~t~~~~~~l~~~L~~~g~~~~~~h~~~ 68 (151)
T 1tf5_A 17 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKN 68 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHCCC
T ss_conf 9999999999999874466527741487889999999987697333242462
No 11
>>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} (A:246-384)
Probab=83.50 E-value=3.4 Score=21.45 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECC--C
Q ss_conf 6748999999999999779849998299899999999852188233313322477765------4442206998328--6
Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTIS--S 81 (141)
Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~--~ 81 (141)
..+....+..++.+.. .+.+++|+|++.+.++.|.+.|=........=|+-.....- -......|+++++ .
T Consensus 14 ~~~k~~~l~~~l~~~~-~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~~~~~f~~~~~~ilv~t~~~~ 92 (139)
T 2i4i_A 14 ESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 92 (139)
T ss_dssp GGGHHHHHHHHHHTCC-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHH
T ss_pred CCCCHHHHCCCCCCCC-CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCHHH
T ss_conf 2220011012221123-566304776303107899999986897699972765599999998740368850567410543
Q ss_pred CCCCCCCEEEEEECC
Q ss_conf 678998199998168
Q gi|254780391|r 82 LNANTSTIRFLVDEA 96 (141)
Q Consensus 82 ~~~~~~~~~~linl~ 96 (141)
...+-.++..+|+..
T Consensus 93 ~Gid~~~v~~Vi~~d 107 (139)
T 2i4i_A 93 RGLDISNVKHVINFD 107 (139)
T ss_dssp TTSCCCCEEEEEESS
T ss_pred CCCCCCCCCEEEEEC
T ss_conf 577866888899958
No 12
>>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} (A:212-367)
Probab=83.00 E-value=3.5 Score=21.33 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECCC--CC
Q ss_conf 48999999999999779849998299899999999852188233313322477765------44422069983286--67
Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTISS--LN 83 (141)
Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~~--~~ 83 (141)
+....+..++ -..+.+++|+|.+.+.++.+-+.|=...-....=|+-.....- -......|+++++. ..
T Consensus 14 ~k~~~l~~ll---~~~~~k~iIf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~iLv~T~~~~~G 90 (156)
T 1hv8_A 14 ERFEALCRLL---KNKEFYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRG 90 (156)
T ss_dssp GHHHHHHHHH---CSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHH
T ss_pred CCCCCCCCCC---CCCCCCCCCEECCCHHHHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCCCCCCCEEEEEEEEEHHCC
T ss_conf 2200011110---2456554201012014589999864048612210124561211232112357851148984301122
Q ss_pred CCCCCEEEEEECCC-CCCC-H---HHCC------CEEEEEECCCCHHHH
Q ss_conf 89981999981687-7821-1---3117------579999759898999
Q gi|254780391|r 84 ANTSTIRFLVDEAS-MHIG-D---VDYY------EKVVFIINTDDQGSL 121 (141)
Q Consensus 84 ~~~~~~~~linl~~-~~p~-~---~~~f------~rvieiv~~~d~~~~ 121 (141)
.+-+++.++++.+. ..+. + .++. ..++-+++..|....
T Consensus 91 idip~v~~vi~~~~p~~~~~~~qr~gR~gR~g~~g~~i~~~~~~d~~~~ 139 (156)
T 1hv8_A 91 IDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKL 139 (156)
T ss_dssp CCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHH
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEEECHHHHHHH
T ss_conf 5755788899958999999999885307759995289999877899999
No 13
>>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} (A:)
Probab=80.19 E-value=4.4 Score=20.72 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--CC
Q ss_conf 74899999999999977984999829989999999985218823331332247776------54442206998328--66
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--SL 82 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~~ 82 (141)
+.....+.+|+++- .+.+++|+|.+...++.|-+.|....-....=|+-..... .-......|+++++ ..
T Consensus 15 ~~k~~~L~~ll~~~--~~~k~iVF~~s~~~~~~l~~~L~~~g~~~~~~h~~~~~~~R~~~~~~f~~g~~~iLv~Td~~~r 92 (165)
T 1fuk_A 15 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165)
T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred HHHHHHHHHHHHCC--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 78999999999708--9980999988589999999999857997899857999899999999997089868986120014
Q ss_pred CCCCCCEEEEEECCC--CCCCHHHCCC---------EEEEEECCCC
Q ss_conf 789981999981687--7821131175---------7999975989
Q gi|254780391|r 83 NANTSTIRFLVDEAS--MHIGDVDYYE---------KVVFIINTDD 117 (141)
Q Consensus 83 ~~~~~~~~~linl~~--~~p~~~~~f~---------rvieiv~~~d 117 (141)
..+-.++...||... ....++.+.. .++-++...|
T Consensus 93 Gid~~~v~~VInyd~P~~~~~yi~R~GR~~R~g~~g~~i~~~~~~e 138 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp TCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEEECHHH
T ss_conf 6647773488872699999997057211775899569999987899
No 14
>>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:784-941)
Probab=79.43 E-value=4.7 Score=20.57 Aligned_cols=121 Identities=10% Similarity=0.009 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC-CCCCCC-CCCCCCCCC------CCCCCCCEEEEECC--CC
Q ss_conf 899999999999977984999829989999999985218-823331-332247776------54442206998328--66
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW-KKDGFL-PHGVDVGDE------GDFSSFQPVLLTIS--SL 82 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~-~~~sFi-PH~~~~~~~------~~~~~~~PV~i~~~--~~ 82 (141)
....+...+.+....+.+++|+|...+.++.+.+.|... +..+.. =|+-..... .-......|+++++ .+
T Consensus 14 ~~~~~~~~i~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~v~~~hg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~ 93 (158)
T 2eyq_A 14 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 93 (158)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCHHHHC
T ss_conf 10446999999999659858996567645899999998688872887416788899999999997698656634355530
Q ss_pred CCCCCCEEEEEECC-CCCC-CHH-HCCCE---------EEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 78998199998168-7782-113-11757---------99997598989999999999999988
Q gi|254780391|r 83 NANTSTIRFLVDEA-SMHI-GDV-DYYEK---------VVFIINTDDQGSLEWGRAHWRSLKNS 134 (141)
Q Consensus 83 ~~~~~~~~~linl~-~~~p-~~~-~~f~r---------vieiv~~~d~~~~~~aR~rwk~yk~~ 134 (141)
..+-+++.++++.. +..+ ..+ ++-.| ++-++ ..++.....++++.+..++.
T Consensus 94 GiDip~v~~vi~~~~p~~~~~~~~Q~~GR~~R~~~~g~~~~~~-~~~~~~~~~~~~r~~~~~~~ 156 (158)
T 2eyq_A 94 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT-PHPKAMTTDAQKRLEAIASL 156 (158)
T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE-CCGGGSCHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEE-CCCCCCCHHHHHHHHHHHHC
T ss_conf 3668887368870565332367888751431588887399997-79877898899999999971
No 15
>>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} (A:197-211,A:342-494)
Probab=79.24 E-value=4.1 Score=20.96 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCC---C---------CCCCCE
Q ss_conf 74899999999999977--98499982998999999998521--88233313322477765---4---------442206
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEK--GKRVSVQCGSERVRDSLNEYLWT--WKKDGFLPHGVDVGDEG---D---------FSSFQP 74 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~--~~ri~I~~~d~~~~~~lD~~LW~--~~~~sFiPH~~~~~~~~---~---------~~~~~P 74 (141)
++....+..++.+.+.. +.+++|+|++.++++.+.+.|=. ++...+.++.......+ . ......
T Consensus 16 ~~k~~~l~~~i~~~~~~~~~~k~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~f~~g~~~ 95 (168)
T 1wp9_A 16 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 95 (168)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 35899999998888740677531110102888999999986469743786135545467788999999999999779998
Q ss_pred EEEECCC--CCCCCCCEEEEEECC
Q ss_conf 9983286--678998199998168
Q gi|254780391|r 75 VLLTISS--LNANTSTIRFLVDEA 96 (141)
Q Consensus 75 V~i~~~~--~~~~~~~~~~linl~ 96 (141)
|+|+++. +..+-.++..+|+.+
T Consensus 96 iLi~T~~l~~Gidlp~~~~VI~~~ 119 (168)
T 1wp9_A 96 VLVATSVGEEGLDVPEVDLVVFYE 119 (168)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESS
T ss_pred EEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 998844027035614598999948
No 16
>>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens} (A:)
Probab=71.56 E-value=7.6 Score=19.32 Aligned_cols=118 Identities=17% Similarity=0.038 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--CCC
Q ss_conf 4899999999999977984999829989999999985218823331332247776------54442206998328--667
Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--SLN 83 (141)
Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~~~ 83 (141)
+....+.+++ -..+.+++|+|...+.++.|...|....-....=|+-..... .-......|+++++ ...
T Consensus 41 ~k~~~l~~~l---~~~~~~~lIF~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLi~T~~~~~G 117 (191)
T 2p6n_A 41 AKMVYLLECL---QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKG 117 (191)
T ss_dssp GHHHHHHHHH---TTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTT
T ss_pred HHHHHHHHHH---HHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEECCHHHHHH
T ss_conf 9999999999---7689989999887799999999876428863334555420000022221223111202230123210
Q ss_pred CCCCCEEEEEECCC--CCCCHHH---------CCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 89981999981687--7821131---------175799997598989999999999999988
Q gi|254780391|r 84 ANTSTIRFLVDEAS--MHIGDVD---------YYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134 (141)
Q Consensus 84 ~~~~~~~~linl~~--~~p~~~~---------~f~rvieiv~~~d~~~~~~aR~rwk~yk~~ 134 (141)
.+-+++...|+.+. ....+.+ +-..++-++.+.+++. ..+..-+.+...
T Consensus 118 idl~~v~~Vi~~~~p~~~~~~~q~~GR~~R~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 177 (191)
T 2p6n_A 118 LDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES--VLMDLKALLLEA 177 (191)
T ss_dssp CCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH--HHHHHHHHHHHT
T ss_pred CCCCCCCHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCHHH--HHHHHHHHHHHC
T ss_conf 122554201115855479999751675774899638999988822699--999999999984
No 17
>>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} (A:)
Probab=68.50 E-value=8.9 Score=18.92 Aligned_cols=83 Identities=13% Similarity=0.008 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECCC--C
Q ss_conf 74899999999999977984999829989999999985218823331332247776------544422069983286--6
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTISS--L 82 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~~--~ 82 (141)
.+....+..|+... .+.+++|+|.....++.|-+.|-...-..-.=|+-..... .-......|+++++. .
T Consensus 16 ~~K~~~l~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~er~~~~~~F~~g~~~ilv~T~~~~~ 93 (172)
T 1t5i_A 16 NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp GGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred HHHHHHHHHHHHHC--CCCCEEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECHHHHHH
T ss_conf 99999999999727--8884899970030225556776520344210002220233210022322110101212177775
Q ss_pred CCCCCCEEEEEEC
Q ss_conf 7899819999816
Q gi|254780391|r 83 NANTSTIRFLVDE 95 (141)
Q Consensus 83 ~~~~~~~~~linl 95 (141)
..+-..+...||.
T Consensus 94 Gid~~~~~~vi~~ 106 (172)
T 1t5i_A 94 GMDIERVNIAFNY 106 (172)
T ss_dssp TCCGGGCSEEEES
T ss_pred HHHCCCCCHHHHC
T ss_conf 5530354022111
No 18
>>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} (A:220-391)
Probab=67.33 E-value=9.4 Score=18.77 Aligned_cols=118 Identities=9% Similarity=-0.033 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECCC--C
Q ss_conf 74899999999999977984999829989999999985218823331332247776------544422069983286--6
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTISS--L 82 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~~--~ 82 (141)
.+....++.|+.+. .+.+++|+|++...++.|-..|=...-..-.=|+-..... .-.....+|+++++. .
T Consensus 16 ~~K~~~l~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~g~~~vlv~T~~~~~ 93 (172)
T 1xti_A 16 NEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp GGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSS
T ss_pred HHHHHHHHHHHHHC--CCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 14788999887620--2541588862045699999999856997699731364000145777765213128983035456
Q ss_pred CCCCCCEEEEEECCCCCCC--HHHC---------CCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 7899819999816877821--1311---------757999975989899999999999999
Q gi|254780391|r 83 NANTSTIRFLVDEASMHIG--DVDY---------YEKVVFIINTDDQGSLEWGRAHWRSLK 132 (141)
Q Consensus 83 ~~~~~~~~~linl~~~~p~--~~~~---------f~rvieiv~~~d~~~~~~aR~rwk~yk 132 (141)
..+-..+..+||.+..... +..+ -..++-++.. +......+.-.+.+.
T Consensus 94 GiD~~~v~~VI~~~~p~~~~~yiqr~GR~gR~g~~g~~i~~~~~--~~~~~~~~~i~~~~~ 152 (172)
T 1xti_A 94 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD--ENDAKILNDVQDRFE 152 (172)
T ss_dssp CBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECS--HHHHHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEEECC--HHHHHHHHHHHHHHC
T ss_conf 66778898999979999999988422424679894489999875--138999999999974
No 19
>>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP- binding, helicase, nucleotide-binding; 2.80A {Thermus thermophilus HB27} (A:1-180)
Probab=64.33 E-value=11 Score=18.42 Aligned_cols=107 Identities=12% Similarity=0.008 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECCC--C
Q ss_conf 7489999999999997798499982998999999998521882333133224777654------4422069983286--6
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTISS--L 82 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~~--~ 82 (141)
......+..++++. .+.+++|+|.+...++.|-+.|....-..-.=|+-.....-. ......|+++++. .
T Consensus 13 ~~K~~~l~~~i~~~--~~~k~lVf~~s~~~~~~l~~~L~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~vli~t~~~~~ 90 (180)
T 3i32_A 13 RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90 (180)
T ss_dssp SSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTC
T ss_pred HHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 77999999999857--9896999989689999999999868996899978997677666776531023223321555541
Q ss_pred CCCC--CCEEEEEECCCCCCCHHHC---C------CEEEEEECCCCHH
Q ss_conf 7899--8199998168778211311---7------5799997598989
Q gi|254780391|r 83 NANT--STIRFLVDEASMHIGDVDY---Y------EKVVFIINTDDQG 119 (141)
Q Consensus 83 ~~~~--~~~~~linl~~~~p~~~~~---f------~rvieiv~~~d~~ 119 (141)
..+- ..+.++.+.......+.++ . ..++-+++..+..
T Consensus 91 Gldi~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~ 138 (180)
T 3i32_A 91 GLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 138 (180)
T ss_dssp STTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHH
T ss_pred CCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECHHHHH
T ss_conf 010231022011379710447878727266367874279985699998
No 20
>>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} (A:245-410)
Probab=64.28 E-value=11 Score=18.41 Aligned_cols=113 Identities=13% Similarity=0.032 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--CCCC
Q ss_conf 899999999999977984999829989999999985218823331332247776------54442206998328--6678
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--SLNA 84 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~~~~ 84 (141)
....+..|+.+- .+.+++|+|.+.+.++.+-+.|=........=|+-..... .-.....+|+++++ ....
T Consensus 19 k~~~L~~ll~~~--~~~k~iIF~~t~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~~~~F~~g~~~ilv~Td~~~rGi 96 (166)
T 2j0s_A 19 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGL 96 (166)
T ss_dssp HHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSC
T ss_pred HHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHCCC
T ss_conf 888899998732--687089995371899999986410798269885798546578899998724880999926121477
Q ss_pred CCCCEEEEEECCCCCCCHHH-------------CCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 99819999816877821131-------------1757999975989899999999999999
Q gi|254780391|r 85 NTSTIRFLVDEASMHIGDVD-------------YYEKVVFIINTDDQGSLEWGRAHWRSLK 132 (141)
Q Consensus 85 ~~~~~~~linl~~~~p~~~~-------------~f~rvieiv~~~d~~~~~~aR~rwk~yk 132 (141)
+-.++...||.. .|.... +-..++-++. .+|. ..+|.--+.++
T Consensus 97 D~~~v~~Vi~~d--~P~~~~~y~hR~GR~gR~g~~G~~i~~~~-~~e~--~~~~~i~~~~~ 152 (166)
T 2j0s_A 97 DVPQVSLIINYD--LPNNRELYIHRIGRSGRYGRKGVAINFVK-NDDI--RILRDIEQYYS 152 (166)
T ss_dssp CCTTEEEEEESS--CCSSHHHHHHHHTTSSGGGCCEEEEEEEE-GGGH--HHHHHHHHHTT
T ss_pred CCCCCCEEEEEC--CCCCHHHHHHHHHHCCCCCCCEEEEEEEC-HHHH--HHHHHHHHHHC
T ss_conf 767898899969--99999999977513447999549999975-7899--99999999972
No 21
>>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:141-294)
Probab=61.52 E-value=12 Score=18.11 Aligned_cols=82 Identities=13% Similarity=-0.055 Sum_probs=52.2
Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECC--CCCCCCCCEEEEEEC
Q ss_conf 99999977984999829989999999985218823331332247776--54442206998328--667899819999816
Q gi|254780391|r 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE--GDFSSFQPVLLTIS--SLNANTSTIRFLVDE 95 (141)
Q Consensus 20 L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~--~~~~~~~PV~i~~~--~~~~~~~~~~~linl 95 (141)
+.++....+.+++|+|++.+.++.+-+.|+...-....=|+-..... .-......|+++++ +...+-.++.+.+.+
T Consensus 23 ~~~~~~~~~~~~lIF~~t~~~~~~l~~~L~~~~~~~~~~h~~~~~~~~~~~~~g~~~ilvaT~~l~~Gidi~~v~~V~~~ 102 (154)
T 2v6i_A 23 GYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPR 102 (154)
T ss_dssp CCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECC
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCEEEECHHHHHCCCCCCCEEEECC
T ss_conf 99999855898799979899999999999868990999579999999998667995199980578618727961899899
Q ss_pred CCCCCC
Q ss_conf 877821
Q gi|254780391|r 96 ASMHIG 101 (141)
Q Consensus 96 ~~~~p~ 101 (141)
....+.
T Consensus 103 ~~~~~~ 108 (154)
T 2v6i_A 103 KTIKPI 108 (154)
T ss_dssp EEEEEE
T ss_pred CCCCEE
T ss_conf 764028
No 22
>>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8} (A:410-582,A:660-722)
Probab=60.45 E-value=13 Score=17.99 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=35.9
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 63167489999999999997798499982998999999998521
Q gi|254780391|r 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWT 50 (141)
Q Consensus 7 Y~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~ 50 (141)
|........++..=+......|+.|+|-+.+-+..+.|+++|=.
T Consensus 13 Y~T~~eK~~Aiv~ei~e~h~~GqPVLVGT~sve~SE~LS~~L~~ 56 (236)
T 2ipc_A 13 YRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKE 56 (236)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 86399999999999999996499689973626877999999875
No 23
>>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:236-373)
Probab=60.30 E-value=13 Score=17.98 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHH--HHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECC--
Q ss_conf 74899999999999--97798499982998999999998521882333133224777654------442206998328--
Q gi|254780391|r 11 NDWEYNLLVLLQDE--YEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTIS-- 80 (141)
Q Consensus 11 ~~~~~~~~~L~~K~--~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~-- 80 (141)
.+....+-.|.+-. ...+.+++|+|+..+.++.|.+.|.........=|+-.....-. ......++++++
T Consensus 13 ~~~~~~~~~l~~~i~~~~~~~~~lIf~~t~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~~lv~t~~~ 92 (138)
T 2v1x_A 13 SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 92 (138)
T ss_dssp SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECHH
T ss_conf 00155677888988763357761699754221456778876418603310475229899999999977997689984505
Q ss_pred CCCCCCCCEEEEEECC
Q ss_conf 6678998199998168
Q gi|254780391|r 81 SLNANTSTIRFLVDEA 96 (141)
Q Consensus 81 ~~~~~~~~~~~linl~ 96 (141)
....+.+++...|+..
T Consensus 93 ~~G~d~~~~~~Vi~~~ 108 (138)
T 2v1x_A 93 GMGIDKPDVRFVIHHS 108 (138)
T ss_dssp CTTCCCSCEEEEEESS
T ss_pred HHCCCCCCCCEEEECC
T ss_conf 5406799977472158
No 24
>>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:357-459)
Probab=59.70 E-value=7.6 Score=19.32 Aligned_cols=36 Identities=25% Similarity=0.065 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 999999999977984999829989999999985218
Q gi|254780391|r 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 (141)
Q Consensus 16 ~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~ 51 (141)
.+..++++..+.|.+|+|.|.+..+++.|-++|=.+
T Consensus 17 ~l~~~~~~~~~~g~~V~i~a~s~~~~~rl~e~L~e~ 52 (103)
T 2eyq_A 17 PLDALRKFLETFDGPVVFSVESEGRREALGELLARI 52 (103)
T ss_dssp TTHHHHHHHTTCCSCCCEEESSHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHC
T ss_conf 899999999963884133048889999999999864
No 25
>>3gfp_A DEAD box protein 5; mRNA export, ATPase, RECA-fold, ATP-binding, cytoplasm, helicase, hydrolase, membrane, mRNA transport; 1.80A {Saccharomyces cerevisiae} (A:)
Probab=59.15 E-value=13 Score=17.86 Aligned_cols=83 Identities=16% Similarity=0.018 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECC--CCC
Q ss_conf 48999999999999779849998299899999999852188233313322477765------4442206998328--667
Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTIS--SLN 83 (141)
Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~--~~~ 83 (141)
.....++.|+++. .+.+++|+|.+.+.++.|-+.|....-...+=|+-.....- -......|+++++ .+.
T Consensus 23 ~k~~~l~~il~~~--~~~k~lIf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~er~~~~~~F~~~~~~iLv~T~~~~~G 100 (189)
T 3gfp_A 23 DKFDVLTELYGLX--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 100 (189)
T ss_dssp HHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEETTTTTS
T ss_pred HHHHHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHE
T ss_conf 9999999999847--88857999964303466665543102013333134312677764000137875321103400310
Q ss_pred CCCCCEEEEEECC
Q ss_conf 8998199998168
Q gi|254780391|r 84 ANTSTIRFLVDEA 96 (141)
Q Consensus 84 ~~~~~~~~linl~ 96 (141)
.+-+++..+++..
T Consensus 101 idi~~v~~Vi~~~ 113 (189)
T 3gfp_A 101 IDIPTVSXVVNYD 113 (189)
T ss_dssp TTCCCCSEEEESS
T ss_pred EEEHHHHHCCCCC
T ss_conf 1200212100012
No 26
>>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} (A:228-400)
Probab=55.04 E-value=16 Score=17.44 Aligned_cols=118 Identities=9% Similarity=-0.018 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECCC--
Q ss_conf 6748999999999999779849998299899999999852188233313322477765------44422069983286--
Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTISS-- 81 (141)
Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~~-- 81 (141)
.++....++.|+++. ...+++|+|+....++.|-+.|=...-....=|+-.....- -......++++++.
T Consensus 15 ~~~K~~~L~~ll~~~--~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~f~~g~~~~lv~td~~~ 92 (173)
T 1s2m_A 15 ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 92 (173)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS
T ss_pred CCCCCHHHHHHHHCC--CCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEHHHHH
T ss_conf 433202455554304--677289999513433221111332497468873356698887789998669976312001553
Q ss_pred CCCCCCCEEEEEECCCCCCCHHH-------------CCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 67899819999816877821131-------------175799997598989999999999999988
Q gi|254780391|r 82 LNANTSTIRFLVDEASMHIGDVD-------------YYEKVVFIINTDDQGSLEWGRAHWRSLKNS 134 (141)
Q Consensus 82 ~~~~~~~~~~linl~~~~p~~~~-------------~f~rvieiv~~~d~~~~~~aR~rwk~yk~~ 134 (141)
...+-.++...||.. .|.... +=..++-++.+. + ....+.--+.++..
T Consensus 93 rG~d~~~v~~VIn~d--~P~~~~~YiHR~GRtgR~g~~G~ai~~~~~~-d--~~~~~~i~~~~~~~ 153 (173)
T 1s2m_A 93 RGIDIQAVNVVINFD--FPKTAETYLHRIGRSGRFGHLGLAINLINWN-D--RFNLYKIEQELGTE 153 (173)
T ss_dssp SSCCCTTEEEEEESS--CCSSHHHHHHHHCBSSCTTCCEEEEEEECGG-G--HHHHHHHHHHHTCC
T ss_pred CCCCCCCCCEEEEEC--CCCCHHHHHHHHCCCCCCCCCEEEEEEECHH-H--HHHHHHHHHHHCCC
T ss_conf 466756887899969--9999899997624343599955999997479-9--99999999997765
No 27
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:378-536)
Probab=52.36 E-value=17 Score=17.18 Aligned_cols=76 Identities=11% Similarity=-0.049 Sum_probs=49.0
Q ss_pred HHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCEEEEECCC--CCCCCCCEEEEEEC
Q ss_conf 999999779849998299899999999852188233313322477765--44422069983286--67899819999816
Q gi|254780391|r 20 LLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG--DFSSFQPVLLTISS--LNANTSTIRFLVDE 95 (141)
Q Consensus 20 L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~--~~~~~~PV~i~~~~--~~~~~~~~~~linl 95 (141)
.+++....+.+++|+|++..+++.|-++|=...-....=|+-.....- -.....+|+++++. ...+-.++.+.++.
T Consensus 25 ~~~~~~~~~~~~lIF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~~~~~~~g~~~ilvaT~~~~~Gidi~~~~~v~~~ 104 (159)
T 2wv9_A 25 GFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCR 104 (159)
T ss_dssp CCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCCCSEEEECC
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCEEEEEECCHHHHCEECCEEEEEECC
T ss_conf 99999737999999959999999999999868981999779897776733668973699962347624403616999789
No 28
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:225-349)
Probab=49.17 E-value=19 Score=16.87 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=31.6
Q ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 131175799997598989999999999999988998603
Q gi|254780391|r 102 DVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 102 ~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
....+.+|+..+| +|..-++.++.-.+.+++.|+...+
T Consensus 59 l~~~~~~vvi~~D-~D~aG~~~a~~~~~~l~~~~~~~~~ 96 (125)
T 2au3_A 59 LSKFTKKVYILYD-GDDAGRKAMKSAIPLLLSAGVEVYP 96 (125)
T ss_dssp HHTTCSEEEEECC-SSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCCEEEECC-CCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 7612772367427-8677775578877654023652136
No 29
>>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A (A:157-314)
Probab=47.95 E-value=20 Score=16.76 Aligned_cols=60 Identities=8% Similarity=-0.095 Sum_probs=42.2
Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECC
Q ss_conf 9999977984999829989999999985218823331332247776--54442206998328
Q gi|254780391|r 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE--GDFSSFQPVLLTIS 80 (141)
Q Consensus 21 ~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~--~~~~~~~PV~i~~~ 80 (141)
+++....+.+++|+|++...++.+.+.|....-....=|+-..... .-......|+++++
T Consensus 25 l~~l~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~ilvaT~ 86 (158)
T 2jlq_A 25 FDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 86 (158)
T ss_dssp CHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEECG
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCEEEEECH
T ss_conf 99998469999999598899999999997489839993899979998545489942999831
No 30
>>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:146-302)
Probab=46.71 E-value=21 Score=16.64 Aligned_cols=85 Identities=14% Similarity=-0.044 Sum_probs=51.4
Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCCEEEEECCC--CCCCCCCEEEEEECC
Q ss_conf 99999779849998299899999999852188233313322477765--44422069983286--678998199998168
Q gi|254780391|r 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG--DFSSFQPVLLTISS--LNANTSTIRFLVDEA 96 (141)
Q Consensus 21 ~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~--~~~~~~PV~i~~~~--~~~~~~~~~~linl~ 96 (141)
..+....+.+++|+|++.+.++.|.++|.......-.-|+-.....- -......|+++++. ...+-+.+.+.++..
T Consensus 25 ~~~~~~~~~~vLVF~~s~~~~~~l~~~L~~~g~~~~~l~~~~~~~~~~~~~~g~~~vlvaT~~~~~Gid~~~~~~V~~~~ 104 (157)
T 1yks_A 25 HDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLCVERVLDCRT 104 (157)
T ss_dssp CHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCCCSEEEECCE
T ss_pred HHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHCCCCCCEEEEECCC
T ss_conf 99987347986998466999999999998489849998899739888775569835999712576340347239997886
Q ss_pred CCCCCHHHC
Q ss_conf 778211311
Q gi|254780391|r 97 SMHIGDVDY 105 (141)
Q Consensus 97 ~~~p~~~~~ 105 (141)
...+..+..
T Consensus 105 ~~~~~~~~~ 113 (157)
T 1yks_A 105 AFKPVLVDE 113 (157)
T ss_dssp EEEEEEETT
T ss_pred CCCEEEECC
T ss_conf 321046558
No 31
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:284-381,A:547-680)
Probab=46.57 E-value=21 Score=16.63 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=55.4
Q ss_pred EEEEEECCCCH--HHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 27996316748--999999999999779---8499982998999999998521882333133224777654442206998
Q gi|254780391|r 3 TLLFYRFKNDW--EYNLLVLLQDEYEKG---KRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLL 77 (141)
Q Consensus 3 ~v~FY~l~~~~--~~~~~~L~~K~~~~~---~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i 77 (141)
.+.++...+.. ...++..+.+....| ..|-|+|++..++..|-+.|=. .=||+.+.++....... ..|.|
T Consensus 34 ~~~~~~~~~~~~E~~~i~~~I~~~~~~g~~~~dIAIL~r~~~~~~~l~~~L~~----~gIP~~~~~~~~~~~~~-~~V~i 108 (232)
T 2is6_A 34 PISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQ----ASMPYRIYGGMRADTWQ-DAVQL 108 (232)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHH----TTCCEEECSSSCCCCSS-CCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHH----CCCCEEEECCCCCCCCC-CEEEE
T ss_conf 61799547678889999999987875198732124664152418999999997----79988985897646778-96999
Q ss_pred EC-CCCCCCCCCEEEEEEC
Q ss_conf 32-8667899819999816
Q gi|254780391|r 78 TI-SSLNANTSTIRFLVDE 95 (141)
Q Consensus 78 ~~-~~~~~~~~~~~~linl 95 (141)
++ +.-.-...++.++..+
T Consensus 109 ~Tih~~KGlE~~vV~i~~~ 127 (232)
T 2is6_A 109 MTLHSAKGLEFPQVFIVGM 127 (232)
T ss_dssp EEHHHHTTCCEEEEEECCC
T ss_pred EEHHCCCCCCCCEEEEECC
T ss_conf 6645024257888999678
No 32
>>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* (A:416-602)
Probab=46.52 E-value=21 Score=16.62 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--C
Q ss_conf 674899999999999977984999829989999999985218823331332247776------54442206998328--6
Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--S 81 (141)
Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~ 81 (141)
.......+...+.+..+.+.+++|+|...+.++.+..+|=...-....=|+-..... +-......|+|+++ .
T Consensus 12 ~~~k~~~ll~~i~~~~~~~~k~iIF~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~R~~~~~~F~~g~~~ili~T~~~~ 91 (187)
T 2d7d_A 12 IEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLR 91 (187)
T ss_dssp STTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCS
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCH
T ss_conf 33425778999999996387379963452146887777774598400024433453223567764148740799872230
Q ss_pred CCCCCCCEEEEEECCCCC---CCH----HHCC--------CEEEEEECCCCHH
Q ss_conf 678998199998168778---211----3117--------5799997598989
Q gi|254780391|r 82 LNANTSTIRFLVDEASMH---IGD----VDYY--------EKVVFIINTDDQG 119 (141)
Q Consensus 82 ~~~~~~~~~~linl~~~~---p~~----~~~f--------~rvieiv~~~d~~ 119 (141)
...+-.++..+||.++.+ |.+ .++- .+++-++...+..
T Consensus 92 ~Gidi~~v~~VI~~d~~~~~~~~~~~~~iqr~GR~gR~g~~~~i~~~~~~~~~ 144 (187)
T 2d7d_A 92 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKS 144 (187)
T ss_dssp TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHH
T ss_pred HCCCCCCCCEEEECCHHHHHHHHCCCCHHHHCCHHHHCCCCCEEECCCCCCCC
T ss_conf 10156442256521003344311121123210234434677366401026676
No 33
>>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A (A:1-184)
Probab=46.48 E-value=21 Score=16.62 Aligned_cols=84 Identities=14% Similarity=0.005 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECCC--
Q ss_conf 6748999999999999779849998299899999999852188233313322477765------44422069983286--
Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTISS-- 81 (141)
Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~~-- 81 (141)
.+.....+..++.+. .+.+++|+|.+.+.++.|-++|=...-....=|+-.....- -......|+++++.
T Consensus 15 ~~~K~~~l~~~l~~~--~~~k~lIf~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~F~~~~~~vli~t~~~~ 92 (184)
T 3eaq_A 15 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (184)
T ss_dssp TTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred HHHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECHHHH
T ss_conf 876999999999858--989799997958999999999986899789997999999999999988528734897211443
Q ss_pred CCCCCCCEEEEEEC
Q ss_conf 67899819999816
Q gi|254780391|r 82 LNANTSTIRFLVDE 95 (141)
Q Consensus 82 ~~~~~~~~~~linl 95 (141)
...+-..+.++|+.
T Consensus 93 ~Gldl~~~~~vI~~ 106 (184)
T 3eaq_A 93 RGLDIPQVDLVVHY 106 (184)
T ss_dssp CSSSCCCBSEEEES
T ss_pred CCCEECCCHHHHHC
T ss_conf 14311263054426
No 34
>>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A (A:)
Probab=45.58 E-value=9.6 Score=18.71 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.8
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7598989999999999999988998603
Q gi|254780391|r 113 INTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 113 v~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
|...++..|+.-|+--+.||+.||..++
T Consensus 82 Fs~~~~~~K~~i~ei~~kyk~~Gyk~E~ 109 (111)
T 2jmk_A 82 FSDIDENMKKVIKATAEKFKNKGFKVET 109 (111)
T ss_dssp ECSCCTTHHHHHHHHHHHGGGGCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 3254446899999999987537851540
No 35
>>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} (B:252-500)
Probab=44.19 E-value=19 Score=16.97 Aligned_cols=69 Identities=10% Similarity=-0.048 Sum_probs=41.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----C-CCCCCEEE
Q ss_conf 27996316748999999999999779849998299899999999852188233313322477765-----4-44220699
Q gi|254780391|r 3 TLLFYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG-----D-FSSFQPVL 76 (141)
Q Consensus 3 ~v~FY~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~-----~-~~~~~PV~ 76 (141)
++..|.-..+....+..++.+ .+.+++|+|.....++.|-+.|=. .-|+-.....- . ......|+
T Consensus 2 q~~~~~~~~~K~~~L~~lL~~---~~~k~IIF~~t~~~~~~l~~~L~~------~~hg~l~~~~R~~~~~~F~~~~~~il 72 (249)
T 1gku_B 2 NVEDVAVNDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKGDYEKFVEGEIDHL 72 (249)
T ss_dssp CEEEEEESCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTT------SSCEEECTTSSSHHHHHHHHTSCSEE
T ss_pred CHHHHCCCCHHHHHHHHHHHH---HCCCCEEEECCCCHHHHHHHHHHH------CEEEEEEEECCCCCHHHHHCCCHHHH
T ss_conf 113410263327789999997---078856996065038999999753------53788997225676787725413654
Q ss_pred EECC
Q ss_conf 8328
Q gi|254780391|r 77 LTIS 80 (141)
Q Consensus 77 i~~~ 80 (141)
+++.
T Consensus 73 vat~ 76 (249)
T 1gku_B 73 IGTA 76 (249)
T ss_dssp EEEC
T ss_pred HCHH
T ss_conf 0124
No 36
>>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein structure initiative, PSI; 1.60A {Chlorobium tepidum tls} (A:13-94,A:334-355)
Probab=42.86 E-value=24 Score=16.28 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 9999999999977984999829989999999985
Q gi|254780391|r 15 YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYL 48 (141)
Q Consensus 15 ~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~L 48 (141)
...+.+ .|++..+.+|.|+|.+++..+..-++|
T Consensus 26 ~~~a~i-a~aIa~~E~V~Iiv~d~~~~~~a~~~L 58 (104)
T 1xkn_A 26 AVFAEL-AYQLSRSETVNINVLDDAXEAQARELL 58 (104)
T ss_dssp HHHHHH-HHHHHHHSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHCCCEEEEEECCHHHHHHHHHHH
T ss_conf 999999-999857985999989889999999998
No 37
>>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} (A:210-342)
Probab=42.30 E-value=25 Score=16.23 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECC--C
Q ss_conf 67489999999999997798499982998999999998521882333133224777654------442206998328--6
Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTIS--S 81 (141)
Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~--~ 81 (141)
.++....+..+++. ..+.+++|+|...+.++.+-+.|=........=|+-.....-. .....++++++. .
T Consensus 11 ~~~K~~~l~~~l~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~R~~~~~~F~~~~~~~lv~t~~~~ 88 (133)
T 1oyw_A 11 KFKPLDQLXRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 88 (133)
T ss_dssp CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred HHHHHHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHH
T ss_conf 67899999998886--1688479998434038999999986699841224788999999999999769987899720643
Q ss_pred CCCCCCCEEEEEECC
Q ss_conf 678998199998168
Q gi|254780391|r 82 LNANTSTIRFLVDEA 96 (141)
Q Consensus 82 ~~~~~~~~~~linl~ 96 (141)
...+..++...|+..
T Consensus 89 ~g~d~~~v~~Vi~~d 103 (133)
T 1oyw_A 89 XGINKPNVRFVVHFD 103 (133)
T ss_dssp TTTCCTTCCEEEESS
T ss_pred CCCCCCCCCEEEEEC
T ss_conf 677613577799948
No 38
>>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} (A:193-337)
Probab=38.37 E-value=26 Score=16.08 Aligned_cols=110 Identities=11% Similarity=-0.028 Sum_probs=58.0
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEEC
Q ss_conf 9631674899999999999977984999829989999999985218823331332247776------5444220699832
Q gi|254780391|r 6 FYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTI 79 (141)
Q Consensus 6 FY~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~ 79 (141)
+|...++....+..++.+. .+.+++|+|+....++.|-+.|=.. ..=|+-..... .-......|++++
T Consensus 8 ~~~~~~~k~~~l~~~l~~~--~~~k~iIF~~~~~~~~~l~~~l~~~----~~~~~~~~~~~r~~~~~~F~~g~~~vlv~t 81 (145)
T 2z0m_A 8 KFVHVKDDWRSKVQALREN--KDKGVIVFVRTRNRVAKLVRLFDNA----IELRGDLPQSVRNRNIDAFREGEYDMLITT 81 (145)
T ss_dssp EEEECSSSSHHHHHHHHTC--CCSSEEEECSCHHHHHHHHTTCTTE----EEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHC--CCCCEEEEEEEEECCCCCCCCCCCC----EEECCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 2222222212467776514--6884799996540122333232322----003379999999999999867986589973
Q ss_pred C--CCCCCCCCEEEEEECCCCC-CC-HH---------HCCCEEEEEECCCCHHHHH
Q ss_conf 8--6678998199998168778-21-13---------1175799997598989999
Q gi|254780391|r 80 S--SLNANTSTIRFLVDEASMH-IG-DV---------DYYEKVVFIINTDDQGSLE 122 (141)
Q Consensus 80 ~--~~~~~~~~~~~linl~~~~-p~-~~---------~~f~rvieiv~~~d~~~~~ 122 (141)
+ ....+-+++..+|+.++.. +. +. .+=..++-++. .++....
T Consensus 82 ~~~~~Gidi~~~~~vi~~~~~~~~~~~~Qr~GR~gR~g~~g~~~~~~~-~~~~~~~ 136 (145)
T 2z0m_A 82 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEK 136 (145)
T ss_dssp HHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHH
T ss_pred CHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEEC-CCHHHHH
T ss_conf 155447886688789994899999999836402557999438999988-8588999
No 39
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:324-425,A:465-481)
Probab=38.32 E-value=29 Score=15.85 Aligned_cols=75 Identities=11% Similarity=-0.058 Sum_probs=45.1
Q ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCEEEEECCCC--CCCCCCEEEEEECC
Q ss_conf 9999977984999829989999999985218823331332247776--5444220699832866--78998199998168
Q gi|254780391|r 21 LQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE--GDFSSFQPVLLTISSL--NANTSTIRFLVDEA 96 (141)
Q Consensus 21 ~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~--~~~~~~~PV~i~~~~~--~~~~~~~~~linl~ 96 (141)
+......+.+++|+|++.+.++.|.+.|=...-....=|+-.-... .-......|+++++-- ..+ .++...||.-
T Consensus 25 ~~~~~~~~~~~lIF~~s~~~ae~l~~~L~~~g~~~~~lhg~~R~~~~~~f~~g~~~vLVaTdil~rGiD-i~v~~VI~~~ 103 (119)
T 2vbc_A 25 FDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGAN-FRAGRVIDPP 103 (119)
T ss_dssp CHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHTHHHHHSCCSEEEECGGGGTTCC-CCCSEEEECC
T ss_pred HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCEEEEECHHHHHCCC-CCCEEEEECC
T ss_conf 999985689999995988999999999973898299927999877782467999539998658761853-5917999798
No 40
>>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} (A:272-434)
Probab=32.49 E-value=36 Score=15.28 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCCCCCCCEEEEECCC--CC
Q ss_conf 489999999999997798499982998999999998521882333133224777------6544422069983286--67
Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD------EGDFSSFQPVLLTISS--LN 83 (141)
Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~------~~~~~~~~PV~i~~~~--~~ 83 (141)
+....+.+|+ -..+.+++|+|...+.++.|-..|=......-.=|+-.... ..-......|+++++. ..
T Consensus 16 ~k~~~l~~ll---~~~~~k~iVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~G 92 (163)
T 2db3_A 16 AKRSKLIEIL---SEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 92 (163)
T ss_dssp GHHHHHHHHH---HHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSS
T ss_pred CCCCCCCCCC---CCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHC
T ss_conf 2222222222---4567439999704411255788776412454322334303589999999986999799983612305
Q ss_pred CCCCCEEEEEECCCCC--CCHHH---------CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8998199998168778--21131---------1757999975989899999999999999889986
Q gi|254780391|r 84 ANTSTIRFLVDEASMH--IGDVD---------YYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAP 138 (141)
Q Consensus 84 ~~~~~~~~linl~~~~--p~~~~---------~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~ 138 (141)
.+-.++..+|+..... -.+.+ +-..++-++...+ .....+...+.++..+-+.
T Consensus 93 id~~~v~~vI~~d~p~~~~~~~qr~GR~~R~g~~~~~i~~~~~~~--~~~~~~~i~~~~~~~~~~v 156 (163)
T 2db3_A 93 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK--DRAIAADLVKILEGSGQTV 156 (163)
T ss_dssp CCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT--CGGGHHHHHHHHHHTTCCC
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCHH--HHHHHHHHHHHHHHCCCCC
T ss_conf 870469899997999899999957535325999449999986145--3999999999999869979
No 41
>>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} (1:)
Probab=32.44 E-value=36 Score=15.27 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 2113117579999759898999999999999998899860
Q gi|254780391|r 100 IGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 (141)
Q Consensus 100 p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~ 139 (141)
...+.++.+|+..+| +|+.-.+.+++-.+.....|..|+
T Consensus 56 ~~~l~~~~~vii~~D-~D~~G~~~~~~~~~~l~~~g~D~~ 94 (118)
T 1t6t_1 56 DXLEGKWEKVILLFD-LDTHGERINQKXKELLSSQGFLVD 94 (118)
T ss_dssp HHHTTTCSEEEECCC-SSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHCCCCEEEEEC-CCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 999834892699848-988899999999999998699442
No 42
>>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:371-590)
Probab=30.84 E-value=38 Score=15.11 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=44.3
Q ss_pred HHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC-------C-CC--------CCCCCCCCEEEEECC--CCCCC
Q ss_conf 997798499982998999999998521882333133224-------7-77--------654442206998328--66789
Q gi|254780391|r 24 EYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD-------V-GD--------EGDFSSFQPVLLTIS--SLNAN 85 (141)
Q Consensus 24 ~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~-------~-~~--------~~~~~~~~PV~i~~~--~~~~~ 85 (141)
....+.+++|+|++.+.++.+.+.|...-..+---|+.. + .. ........-|+++++ .+..+
T Consensus 65 ~~~~~~~~lIf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ilv~t~~l~~GiD 144 (220)
T 3h1t_A 65 RTDRFAKTIVFCVDQEHADEXRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVD 144 (220)
T ss_dssp HHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCC
T ss_conf 04555533212586899999999999743244431576068982687540899999987310599659999484753168
Q ss_pred CCCEEEEEECCC
Q ss_conf 981999981687
Q gi|254780391|r 86 TSTIRFLVDEAS 97 (141)
Q Consensus 86 ~~~~~~linl~~ 97 (141)
-.++..+|+...
T Consensus 145 ip~v~~Vi~~~~ 156 (220)
T 3h1t_A 145 APTCKNVVLARV 156 (220)
T ss_dssp CTTEEEEEEESC
T ss_pred HHHCCEEEEECC
T ss_conf 634098999127
No 43
>>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens} (B:)
Probab=25.62 E-value=17 Score=17.23 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECCC--CCCCCCCEE
Q ss_conf 999999977984999829989999999985218823331332247776------544422069983286--678998199
Q gi|254780391|r 19 VLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTISS--LNANTSTIR 90 (141)
Q Consensus 19 ~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~~--~~~~~~~~~ 90 (141)
.+.........+++|+|...+.++.+-..|+.....+..=|+-..... .-......|+++++. ...+-.++.
T Consensus 324 ~~~~~~~~~~~~~iif~~~~~~~~~~~~~L~~~~~~~~~lh~~~~~~~r~~~~~~F~~g~~~iLv~Td~~~rGiDi~~V~ 403 (479)
T 3fmp_B 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCC
T ss_conf 99999845777279998413204566655553166400014554220047787787659961999781575768725798
Q ss_pred EEEECC
Q ss_conf 998168
Q gi|254780391|r 91 FLVDEA 96 (141)
Q Consensus 91 ~linl~ 96 (141)
.+||.+
T Consensus 404 ~VI~yd 409 (479)
T 3fmp_B 404 VVINFD 409 (479)
T ss_dssp ------
T ss_pred EEEEEC
T ss_conf 999979
No 44
>>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} (A:219-662)
Probab=24.55 E-value=49 Score=14.43 Aligned_cols=40 Identities=8% Similarity=-0.101 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 4899999999999977984999829989999999985218
Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 (141)
Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~ 51 (141)
..+..++..+.++++.|.+++|=|.....++.|=.+|+.+
T Consensus 7 ~r~~~l~~~i~~tl~~gG~vLIPv~a~GR~qEll~~L~~~ 46 (444)
T 2i7x_A 7 KRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHEL 46 (444)
T ss_dssp HHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8999999999999967998999607853899999999999
No 45
>>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} (A:1-44,A:95-171)
Probab=24.40 E-value=50 Score=14.41 Aligned_cols=59 Identities=12% Similarity=-0.088 Sum_probs=42.1
Q ss_pred CCEEEEEECCC-CHHH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98279963167-4899-99999999997798499982998999999998521882333133
Q gi|254780391|r 1 MRTLLFYRFKN-DWEY-NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPH 59 (141)
Q Consensus 1 Mt~v~FY~l~~-~~~~-~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH 59 (141)
|+.|.-..... .-.. .+.+|+...-+.|.++.|++.|.-.....|=.|=..=+.+-+|-
T Consensus 1 mp~vi~~~G~~G~GKTT~~~~l~~~l~~~g~~v~vi~~D~~~~~d~DlILvEG~K~~~~PK 61 (121)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFDYDLVITEGFSKAGKDR 61 (121)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------TCSEEEEESCGGGCCCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECEECCCCCHCCCCEEEEECCCCCCC
T ss_conf 9979999888995399999999834187886899906642555432200023301112564
No 46
>>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} (A:)
Probab=22.97 E-value=53 Score=14.24 Aligned_cols=25 Identities=8% Similarity=-0.084 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 8999999999999779849998299
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
....++++++++...|.+|+|+|..
T Consensus 69 ~~~~~~~~i~~~~~~~~~VlVHC~~ 93 (160)
T 1yz4_A 69 HFKECINFIHCCRLNGGNCLVHSFA 93 (160)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEEETT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 9999999888753010478762331
No 47
>>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} (A:)
Probab=22.85 E-value=53 Score=14.23 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCH
Q ss_conf 89999999999997798499982998
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSE 38 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~ 38 (141)
....+++++.++.+.|.+|+|+|..-
T Consensus 68 ~~~~~~~~i~~~~~~~~~VlVHC~~G 93 (165)
T 1wrm_A 68 HFKESIKFIHECRLRGESCLVHCLAG 93 (165)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99999998864320343057883344
No 48
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:232-377,A:537-633)
Probab=22.45 E-value=54 Score=14.18 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 899999999999977984999829989999999985218823331332
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHG 60 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~ 60 (141)
...++..+++.+...+.|++|+++....+.++-+.|..+.....+.=.
T Consensus 24 T~~~l~~il~~~~~~~~rvLiLaPtr~Lv~Q~~e~l~~~~~~~~~~~~ 71 (243)
T 2wv9_A 24 TRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPVRYLTPAV 71 (243)
T ss_dssp TTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCCEECCC--
T ss_pred HHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 999999999856146999999969999999999986648638997558
No 49
>>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} (A:)
Probab=22.42 E-value=21 Score=16.63 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CC-CCCCCEEEEECC--CCCCCCCCEEEEEECC--
Q ss_conf 7984999829989999999985218823331332247776-----54-442206998328--6678998199998168--
Q gi|254780391|r 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE-----GD-FSSFQPVLLTIS--SLNANTSTIRFLVDEA-- 96 (141)
Q Consensus 27 ~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~-----~~-~~~~~PV~i~~~--~~~~~~~~~~~linl~-- 96 (141)
.+.+++|+|.+.+.++.+.+.|=...-....=|+-..... .. .....+|+++++ ....+-.++..+|+.+
T Consensus 258 ~~~~~lIf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~iLvaT~~~~~Gidi~~v~~VI~~~~p 337 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLP 337 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCC
T ss_conf 55314777410355555777764302444343321357788999988732786403541133245676688889996999
Q ss_pred CCCCCHHHCCCE
Q ss_conf 778211311757
Q gi|254780391|r 97 SMHIGDVDYYEK 108 (141)
Q Consensus 97 ~~~p~~~~~f~r 108 (141)
...-.+.++..|
T Consensus 338 ~~~~~~~qr~GR 349 (394)
T 1fuu_A 338 ANKENYIHRIGR 349 (394)
T ss_dssp ------------
T ss_pred CCHHHHHHHHHH
T ss_conf 899999988505
No 50
>>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, PSI-2, protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR} (A:)
Probab=21.75 E-value=56 Score=14.09 Aligned_cols=28 Identities=4% Similarity=0.038 Sum_probs=16.2
Q ss_pred CCEEEEEECCCCCCCHHHCCCEEEEEEC
Q ss_conf 8199998168778211311757999975
Q gi|254780391|r 87 STIRFLVDEASMHIGDVDYYEKVVFIIN 114 (141)
Q Consensus 87 ~~~~~linl~~~~p~~~~~f~rvieiv~ 114 (141)
.++..++|++...+..+...-+.+.+-.
T Consensus 72 ~gI~~Vlnl~~e~~~~~~~~~~~~~~~~ 99 (195)
T 2q05_A 72 VKFKYVLNLTXDKYTLPNSNINIIHIPL 99 (195)
T ss_dssp SCCSEEEECSSSCCCCTTCCCEEEECCC
T ss_pred CCCEEEEEEECCCCCCCCCCCEEEEEEE
T ss_conf 9980999975899888888807999998
No 51
>>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} (A:)
Probab=21.64 E-value=56 Score=14.08 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999999999779849998299
Q gi|254780391|r 14 EYNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 14 ~~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
...++.+++++.+.|++|+|+|..
T Consensus 83 ~~~~~~~i~~~~~~~~~VlVHC~~ 106 (188)
T 2esb_A 83 FDPIADHIHSVEMKQGRTLLHCAA 106 (188)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999999888766157517998135
No 52
>>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} (A:1-93,A:213-254)
Probab=21.49 E-value=57 Score=14.06 Aligned_cols=39 Identities=13% Similarity=-0.116 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 899999999999977984999829989999999985218
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~ 51 (141)
+.+.+.++++...+++-+++|.+.|..-+..++.+==.|
T Consensus 47 I~~~~~~i~~~L~~~~vk~IVIACNTASa~AL~~LR~~~ 85 (135)
T 1b73_A 47 IIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEI 85 (135)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 999999999999865998999947745889999999871
Done!