Query gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs 108 out of 530
Neff 7.4
Searched_HMMs 23785
Date Mon May 30 09:54:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780391.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1em8_A DNA polymerase III CHI 100.0 8.7E-41 4.2E-45 265.0 15.2 135 1-140 1-143 (147)
2 1t5i_A C_terminal domain of A 89.9 1 4.3E-05 23.6 7.2 89 6-96 9-107 (172)
3 2ipc_A Preprotein translocase 86.4 0.49 2.1E-05 25.6 3.3 44 6-49 421-464 (997)
4 2qsd_A Uncharacterized conserv 84.7 1.1 4.8E-05 23.4 4.5 95 31-128 30-124 (187)
5 3jux_A Protein translocase sub 83.4 2 8.3E-05 21.9 5.3 67 11-81 457-531 (822)
6 2jgn_A DBX, DDX3, ATP-dependen 82.7 2.6 0.00011 21.3 6.9 90 6-96 24-122 (185)
7 2hjv_A ATP-dependent RNA helic 80.8 3 0.00012 20.9 6.5 106 10-117 19-143 (163)
8 1fuk_A Eukaryotic initiation f 80.8 3 0.00013 20.8 8.7 110 5-118 6-139 (165)
9 2fsf_A Preprotein translocase 80.4 3.1 0.00013 20.8 5.6 81 7-94 420-508 (853)
10 2db3_A ATP-dependent RNA helic 78.5 3.5 0.00015 20.4 7.8 118 18-137 290-426 (434)
11 2rb4_A ATP-dependent RNA helic 62.8 8.1 0.00034 18.2 9.3 92 3-96 7-110 (175)
12 2oca_A DAR protein, ATP-depend 57.9 9.8 0.00041 17.7 11.3 125 15-139 334-496 (510)
13 1nkt_A Preprotein translocase 57.1 10 0.00043 17.6 5.6 57 7-67 439-495 (922)
14 1tf5_A Preprotein translocase 51.7 12 0.00052 17.1 4.9 69 9-81 413-489 (844)
15 2j16_A SDP-1, tyrosine-protein 50.0 13 0.00056 16.9 3.7 32 75-106 52-83 (182)
16 2jmk_A Hypothetical protein TA 45.6 6.8 0.00028 18.7 1.4 28 113-140 82-109 (111)
17 3mwy_W Chromo domain-containin 45.4 16 0.00066 16.5 10.5 113 13-129 557-697 (800)
18 3i32_A Heat resistant RNA depe 39.0 20 0.00083 15.9 8.5 105 10-119 12-138 (300)
19 3cm3_A Late protein H1, dual s 36.6 21 0.0009 15.7 3.3 23 15-37 95-117 (176)
20 3eiq_A Eukaryotic initiation f 33.3 24 0.001 15.4 6.6 114 13-131 267-399 (414)
21 1yz4_A DUSP15, dual specificit 33.2 24 0.001 15.4 4.0 23 15-37 71-93 (160)
22 3igf_A ALL4481 protein; two-do 33.2 24 0.001 15.3 5.6 44 1-44 1-47 (374)
23 2nt2_A Protein phosphatase sli 32.5 25 0.0011 15.3 4.0 23 15-37 68-90 (145)
24 1fuu_A Yeast initiation factor 31.9 7.9 0.00033 18.3 0.0 69 27-95 258-334 (394)
25 1t6t_1 Putative protein; struc 31.2 26 0.0011 15.1 3.9 36 103-139 59-94 (118)
26 2hcm_A Dual specificity protei 30.2 27 0.0012 15.0 4.0 24 15-38 76-99 (164)
27 2p6n_A ATP-dependent RNA helic 30.0 28 0.0012 15.0 4.9 121 11-136 40-179 (191)
28 2g6z_A Dual specificity protei 29.0 29 0.0012 14.9 3.9 24 14-37 69-92 (211)
29 3eaq_A Heat resistant RNA depe 28.9 29 0.0012 14.9 5.6 105 11-118 16-140 (212)
30 1yks_A Genome polyprotein [con 28.0 30 0.0013 14.8 3.9 24 27-50 176-199 (440)
31 2q05_A Late protein H1, dual s 27.5 31 0.0013 14.8 3.8 14 22-35 119-132 (195)
32 2esb_A Dual specificity protei 26.7 32 0.0013 14.7 3.8 24 14-37 83-106 (188)
33 3hgt_A HDA1 complex subunit 3; 25.7 33 0.0014 14.6 10.6 39 13-51 110-148 (328)
34 2wgp_A Dual specificity protei 25.1 34 0.0014 14.5 3.8 22 16-37 91-112 (190)
35 3gfp_A DEAD box protein 5; mRN 23.8 36 0.0015 14.3 5.8 89 6-96 14-113 (189)
36 3emu_A Leucine rich repeat and 23.8 36 0.0015 14.3 4.0 21 17-37 76-96 (161)
37 2hxp_A Dual specificity protei 22.0 39 0.0016 14.1 3.9 21 17-37 74-94 (155)
38 2r0b_A Serine/threonine/tyrosi 22.0 39 0.0016 14.1 3.8 21 17-37 79-99 (154)
39 2jlq_A Serine protease subunit 21.1 41 0.0017 14.0 5.2 39 13-51 33-71 (451)
No 1
>1em8_A DNA polymerase III CHI subunit; DNA POL III, heterodimer, clamp-loader, alpha-beta fold, gene regulation; HET: DNA; 2.10A {Escherichia coli} SCOP: c.128.1.1
Probab=100.00 E-value=8.7e-41 Score=264.98 Aligned_cols=135 Identities=19% Similarity=0.368 Sum_probs=120.0
Q ss_pred CCEEEEEECCCC--------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 982799631674--------899999999999977984999829989999999985218823331332247776544422
Q gi|254780391|r 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72 (141)
Q Consensus 1 Mt~v~FY~l~~~--------~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~ 72 (141)
||+|+||++.++ .+.++|||++|+|++|+|++|+|+|+++++.||++||+|+++|||||++.+++. ...
T Consensus 1 M~~~~FY~l~~~~~~~~l~~~~~~~crL~~K~~~~g~ri~I~~~d~~~a~~LD~~LWt~~~~sFlPH~i~~~~~---~~~ 77 (147)
T 1em8_A 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---RGG 77 (147)
T ss_dssp CEEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCSS---TTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCC---CCC
T ss_conf 98269998579855667768999999999999977997999949999999999998679988585244378886---467
Q ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06998328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r 73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 73 ~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
+||+|+++...++. ..++|||+++..|+++++|+||+|||+ +|++.|+.||+|||+||++||+++.
T Consensus 78 ~pI~l~~~~~~~~~-~~~vliNl~~~~p~~~~~f~Rvieiv~-~de~~~~~aR~r~k~yk~~G~~i~~ 143 (147)
T 1em8_A 78 APVEIAWPQKRSSS-RRDILISLRTSFADFATAFTEVVDFVP-YEDSLKQLARERYKAYRVAGFNLNT 143 (147)
T ss_dssp CSEEEECTTSCCCS-CCSEEEECCSSCCGGGGGCSEEEEEEC-SSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEECCCCCCCC-CCEEEEECCCCCCCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99674068767876-674999899878312146788999969-8999999999999999987998605
No 2
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=89.91 E-value=1 Score=23.62 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=53.4
Q ss_pred EEEC--CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEE
Q ss_conf 9631--6748999999999999779849998299899999999852188233313322477765------4442206998
Q gi|254780391|r 6 FYRF--KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLL 77 (141)
Q Consensus 6 FY~l--~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i 77 (141)
||.. .++....+++|+.+. .+.+++|+|...+.++.|.+.|....-..=.=|+-.....- -......|+|
T Consensus 9 ~yv~v~~~~K~~~L~~ll~~~--~~~k~iIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~l~~F~~g~~~iLi 86 (172)
T 1t5i_A 9 YYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 86 (172)
T ss_dssp EEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEEECHHHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 999967699999999999828--999299997948999999999987799757889999999999999999709844886
Q ss_pred ECCC--CCCCCCCEEEEEECC
Q ss_conf 3286--678998199998168
Q gi|254780391|r 78 TISS--LNANTSTIRFLVDEA 96 (141)
Q Consensus 78 ~~~~--~~~~~~~~~~linl~ 96 (141)
+++. ...+-..+..+||.+
T Consensus 87 ~Td~~~~Gidi~~~~~Vi~~d 107 (172)
T 1t5i_A 87 ATNLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp ESSCCSTTCCGGGCSEEEESS
T ss_pred ECCHHHHCCCCCCCCHHHHHC
T ss_conf 034655167776410245517
No 3
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer, structural genomics; 2.80A {Thermus thermophilus HB8}
Probab=86.36 E-value=0.49 Score=25.56 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=36.9
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 96316748999999999999779849998299899999999852
Q gi|254780391|r 6 FYRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLW 49 (141)
Q Consensus 6 FY~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW 49 (141)
+|........+++.-+....+.|+.|+|-|.+.+.++.|+++|=
T Consensus 421 v~~t~~~k~~Ai~~ei~~~~~~grPVLvgT~sIe~Se~ls~~L~ 464 (997)
T 2ipc_A 421 VYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 88789999999999999999749988997585588899999987
No 4
>2qsd_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, nysgrc; 2.50A {Idiomarina loihiensis}
Probab=84.69 E-value=1.1 Score=23.35 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=62.8
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEE
Q ss_conf 99982998999999998521882333133224777654442206998328667899819999816877821131175799
Q gi|254780391|r 31 VSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVV 110 (141)
Q Consensus 31 i~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvi 110 (141)
.+|.+++.+.+-.-=...|-+++.+-==-++.. -....---|.|+..........-+++||++.=.|..|...-+-.
T Consensus 30 ~Fvvg~~iedt~~~Lk~~Wfg~~~~lHIDs~~~---I~~VDGY~I~l~~~~~~~~~~~kL~FVNlGGY~~~~f~E~H~~~ 106 (187)
T 2qsd_A 30 RFVVGPSMEETYPAIRKGWFGTQKGLHLDSFVH---LHHVDGYRIHLTSEAHEKPEEKRLYFVNFGGYFPNKLAEYHDFT 106 (187)
T ss_dssp EEEEESSSGGGHHHHHHHCCSCSTTCEEEEEEE---CCEETTEEEEEESCC---CCSSEEEEEECC--------CCCSEE
T ss_pred EEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEE---EEEECCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHEEE
T ss_conf 899629999999999975878778888786368---74077669999877777777672799981575898601301876
Q ss_pred EEECCCCHHHHHHHHHHH
Q ss_conf 997598989999999999
Q gi|254780391|r 111 FIINTDDQGSLEWGRAHW 128 (141)
Q Consensus 111 eiv~~~d~~~~~~aR~rw 128 (141)
-+|-.+-.++++.|+++|
T Consensus 107 lvVA~~~~eAK~~AK~~~ 124 (187)
T 2qsd_A 107 VVVADSPQSAKQLARAQF 124 (187)
T ss_dssp EEEESSHHHHHHHHHHTC
T ss_pred EEEECCHHHHHHHHHHHH
T ss_conf 999789999999999777
No 5
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=83.38 E-value=2 Score=21.92 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCEEEEECCC
Q ss_conf 7489999999999997798499982998999999998521882333133224777654442--------2069983286
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS--------FQPVLLTISS 81 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~--------~~PV~i~~~~ 81 (141)
.....+++.-+....++|+.|+|.|.+.+.++.|..+| ....|||.+.........+ .--|.|+++.
T Consensus 457 ~~k~~ai~~~i~~~~~~grpVLIgt~sv~~se~ls~~L----~~~~i~~~vLna~~~~~Ea~iia~AG~~g~VTIATnm 531 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSML----KKKGIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATNM 531 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHH----HTTTCCCEEECSCHHHHHHHHHHHHHSTTCEEEEETT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH----HHCCCCHHEECCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99999999999999755995799944079899999999----9769813100145278789999844899929984532
No 6
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, acetylation, ATP-binding, DNA-binding; 1.91A {Homo sapiens}
Probab=82.65 E-value=2.6 Score=21.25 Aligned_cols=90 Identities=19% Similarity=0.211 Sum_probs=50.6
Q ss_pred EEECC-CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEE
Q ss_conf 96316-7489999999999997798499982998999999998521882333133224777654------4422069983
Q gi|254780391|r 6 FYRFK-NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLT 78 (141)
Q Consensus 6 FY~l~-~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~ 78 (141)
|+... .+....+..|+.+. ..+.+++|+|.+.+.++.|-+.|=...-..=.-|+-.....-. ......|+++
T Consensus 24 ~i~v~~~~K~~~L~~lL~~~-~~~~k~iIF~~t~~~~~~l~~~L~~~~~~~~~lh~~~~~~~R~~~l~~f~~g~~~vLVa 102 (185)
T 2jgn_A 24 VVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVA 102 (185)
T ss_dssp EEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHC-CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99917078999999999833-99994899979789999999999867998898708999999999999986599748985
Q ss_pred CC--CCCCCCCCEEEEEECC
Q ss_conf 28--6678998199998168
Q gi|254780391|r 79 IS--SLNANTSTIRFLVDEA 96 (141)
Q Consensus 79 ~~--~~~~~~~~~~~linl~ 96 (141)
++ ....+-.++..+||-.
T Consensus 103 Td~~~rGiDi~~v~~VI~yd 122 (185)
T 2jgn_A 103 TAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp EC------CCCSBSEEEESS
T ss_pred ECHHHHCCCCCCCCEEEEEC
T ss_conf 00022002468886589924
No 7
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=80.85 E-value=3 Score=20.86 Aligned_cols=106 Identities=11% Similarity=0.032 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCCCCCCCEEEEECCC--
Q ss_conf 67489999999999997798499982998999999998521882333133224777------6544422069983286--
Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD------EGDFSSFQPVLLTISS-- 81 (141)
Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~------~~~~~~~~PV~i~~~~-- 81 (141)
.++...+++.|++. ..+.+++|+|...+.++.|-+.|=...-..-.=|+-.... .+-......|+++++.
T Consensus 19 ~~~K~~~L~~ll~~--~~~~k~iVF~~s~~~~~~l~~~l~~~g~~~~~~~g~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 96 (163)
T 2hjv_A 19 EENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAA 96 (163)
T ss_dssp GGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGT
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEEEEHHHHH
T ss_conf 89999999999984--7988599996909999999998986698389997783298898652323478568998614544
Q ss_pred CCCCCCCEEEEEECCC-CCCC-HHH------CC---CEEEEEECCCC
Q ss_conf 6789981999981687-7821-131------17---57999975989
Q gi|254780391|r 82 LNANTSTIRFLVDEAS-MHIG-DVD------YY---EKVVFIINTDD 117 (141)
Q Consensus 82 ~~~~~~~~~~linl~~-~~p~-~~~------~f---~rvieiv~~~d 117 (141)
...+-.++...|+.+. ..+. +.. |+ ..++-++...|
T Consensus 97 ~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d 143 (163)
T 2hjv_A 97 RGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp TTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGG
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
T ss_conf 76676655089975898689999998671570799757999747899
No 8
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=80.77 E-value=3 Score=20.84 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=61.9
Q ss_pred EEEEC-CC--CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEE
Q ss_conf 99631-67--48999999999999779849998299899999999852188233313322477765------44422069
Q gi|254780391|r 5 LFYRF-KN--DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPV 75 (141)
Q Consensus 5 ~FY~l-~~--~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV 75 (141)
-||.. .+ .....++.|+++ ..+.+++|+|.+.+.++.+.+.|....-....=|+-.....- -.....-|
T Consensus 6 q~y~~v~~~~~Kl~~L~~ll~~--~~~~k~iIF~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~i 83 (165)
T 1fuk_A 6 QFYVNVEEEEYKYECLTDLYDS--ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp EEEEEEESGGGHHHHHHHHHHH--TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred EEEEEECCCHHHHHHHHHHHHH--CCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCE
T ss_conf 9999948818899999999984--79983999991767799999999857997899969999999999999985388755
Q ss_pred EEECCC--CCCCCCCEEEEEECCCCCCCHHHCC----C---------EEEEEECCCCH
Q ss_conf 983286--6789981999981687782113117----5---------79999759898
Q gi|254780391|r 76 LLTISS--LNANTSTIRFLVDEASMHIGDVDYY----E---------KVVFIINTDDQ 118 (141)
Q Consensus 76 ~i~~~~--~~~~~~~~~~linl~~~~p~~~~~f----~---------rvieiv~~~d~ 118 (141)
+++++. ...+-.++..+||.. .|.....| . .++-++...|.
T Consensus 84 Lv~Td~~~rGiDi~~v~~VI~~d--~P~~~~~yiqR~GR~gR~g~~g~~i~~~~~~d~ 139 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYD--LPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESS--CCSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred EEEEHHHHCCCCCCCCCEEEEEC--CCCCHHHHHHHHCCCCCCCCCEEEEEEECHHHH
T ss_conf 77312543666789998899988--997899998987035658995599998558999
No 9
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=80.38 E-value=3.1 Score=20.76 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=53.6
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCEEEEE
Q ss_conf 63167489999999999997798499982998999999998521882333133224777654442--------2069983
Q gi|254780391|r 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS--------FQPVLLT 78 (141)
Q Consensus 7 Y~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~--------~~PV~i~ 78 (141)
|........+++.-+.....+|+.|+|-|.+.+.++.|+++|=. .-|||.+.........+ .--|.|+
T Consensus 420 ~~t~~~k~~ai~~ei~~~~~~grpVLvgt~sv~~se~ls~~L~~----~~i~h~vLnak~~~~Ea~Iia~AG~~g~VTIA 495 (853)
T 2fsf_A 420 YMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTK----AGIKHNVLNAKFHANEAAIVAQAGYPAAVTIA 495 (853)
T ss_dssp ESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH----TTCCCEECCTTCHHHHHHHHHTTTSTTCEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH----CCCHHHHHHCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 96217889999999999997189779984249879999999987----48607676323306589999845899977984
Q ss_pred CCCCCCCCCCEEEEEE
Q ss_conf 2866789981999981
Q gi|254780391|r 79 ISSLNANTSTIRFLVD 94 (141)
Q Consensus 79 ~~~~~~~~~~~~~lin 94 (141)
++. .+.+.|+.+.
T Consensus 496 TNM---AGRGTDIkLg 508 (853)
T 2fsf_A 496 TNM---AGRGTDIVLG 508 (853)
T ss_dssp ESC---CSSCSCCCTT
T ss_pred CCC---CCCCCCCCCC
T ss_conf 110---1477575467
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.49 E-value=3.5 Score=20.40 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=70.1
Q ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECCC--CCCCCCCE
Q ss_conf 999999997798499982998999999998521882333133224777654------4422069983286--67899819
Q gi|254780391|r 18 LVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTISS--LNANTSTI 89 (141)
Q Consensus 18 ~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~~--~~~~~~~~ 89 (141)
..++......+.+++|+|.+.+.++.+-+.|....-.+..-|+-.....-. ......|+++++. ...+-.++
T Consensus 290 ~~~~~~~~~~~~~~iIF~~t~~~a~~l~~~L~~~~~~~~~~h~~~~~~~R~~~l~~F~~g~~~ILvaTd~~~rGlDip~V 369 (434)
T 2db3_A 290 SKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 32212112467349999434187999999987412453322456789999999999875998799977853157772149
Q ss_pred EEEEECCC-C-CCCHHHCC---------CEEEEEECCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99981687-7-82113117---------5799997598989999999999999988998
Q gi|254780391|r 90 RFLVDEAS-M-HIGDVDYY---------EKVVFIINTDDQGSLEWGRAHWRSLKNSGYA 137 (141)
Q Consensus 90 ~~linl~~-~-~p~~~~~f---------~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~ 137 (141)
...||.+. . ...++.+. ..++-++++.+ .+..++.--|..+..|-+
T Consensus 370 ~~VI~~d~P~s~~~yihriGR~GR~g~~G~ai~f~~~~~--~~~~~~~l~~~l~~~~q~ 426 (434)
T 2db3_A 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK--DRAIAADLVKILEGSGQT 426 (434)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT--CGGGHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEEECCHH--HHHHHHHHHHHHHHCCCC
T ss_conf 789996999898998643250547999538999977177--799999999999986998
No 11
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural genomics consortium, SGC, alternative initiation ATP-binding; 2.80A {Homo sapiens}
Probab=62.76 E-value=8.1 Score=18.24 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=55.7
Q ss_pred EEE-EEECCCC---HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCC
Q ss_conf 279-9631674---8999999999999779849998299899999999852188233313322477765------44422
Q gi|254780391|r 3 TLL-FYRFKND---WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSF 72 (141)
Q Consensus 3 ~v~-FY~l~~~---~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~ 72 (141)
.|- ||...++ ....++.|+++ ..+.+++|+|.+...++.|...|=...-....=|+-.+...- -....
T Consensus 7 nikq~y~~~~~~~~K~~~L~~ll~~--~~~~k~lIF~~s~~~~~~l~~~l~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~ 84 (175)
T 2rb4_A 7 NIRQYYVLCEHRKDKYQALCNIYGS--ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHTT--SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 6589999959888999999999985--89998999979288899999999877998899709999999999999976699
Q ss_pred CEEEEECC--CCCCCCCCEEEEEECC
Q ss_conf 06998328--6678998199998168
Q gi|254780391|r 73 QPVLLTIS--SLNANTSTIRFLVDEA 96 (141)
Q Consensus 73 ~PV~i~~~--~~~~~~~~~~~linl~ 96 (141)
..|+++++ ....+-.++.+.||..
T Consensus 85 ~~iLv~Td~~~rGiDi~~v~~VInyd 110 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFD 110 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESS
T ss_pred CEEEEEEEECCCCCCCCCCCEEEEEC
T ss_conf 42998443100102357875899977
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=57.94 E-value=9.8 Score=17.73 Aligned_cols=125 Identities=8% Similarity=-0.006 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEEC-C--CCCCC
Q ss_conf 999999999997798499982998999999998521882333133224777654------44220699832-8--66789
Q gi|254780391|r 15 YNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTI-S--SLNAN 85 (141)
Q Consensus 15 ~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~-~--~~~~~ 85 (141)
..++.++.+....+.+++|+|...++++.+-++|.......+.=|+-.....-. .....+|++++ + .+..+
T Consensus 334 ~~i~~l~~~~~~~~~~~LI~~~~~~~~~~l~~~L~~~~~~~~~i~g~~~~~~r~~~~~~~~~~~~~iivaT~~vl~~GiD 413 (510)
T 2oca_A 334 KWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCHHHCEEC
T ss_conf 88999887765542346678877886999999998538838999578757789999999756998599998796554225
Q ss_pred CCCEEEEEECCCCCCC--HH------------HCCCEEEEEECCCC---------------HHHHHHHHHHHHHHHHCCC
Q ss_conf 9819999816877821--13------------11757999975989---------------8999999999999998899
Q gi|254780391|r 86 TSTIRFLVDEASMHIG--DV------------DYYEKVVFIINTDD---------------QGSLEWGRAHWRSLKNSGY 136 (141)
Q Consensus 86 ~~~~~~linl~~~~p~--~~------------~~f~rvieiv~~~d---------------~~~~~~aR~rwk~yk~~G~ 136 (141)
-+++..+|..++.-.. .. .....+++++|... .-.+...-+|.+.|.+..|
T Consensus 414 ip~l~~vI~~~p~kS~~~~iQ~iGR~lR~~~~K~~~~i~D~vd~~~~~~~~~~~~~~~~~~ny~~~h~~~r~~iy~~e~f 493 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSANTKKKYVHLNYLLKHGIDRIQRYADEKF 493 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSSSCSCSCSBCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_conf 45468999977999889999997337867999856999998526777756555555555515358989999988874478
Q ss_pred CCC
Q ss_conf 860
Q gi|254780391|r 137 APD 139 (141)
Q Consensus 137 ~~~ 139 (141)
.-+
T Consensus 494 ~y~ 496 (510)
T 2oca_A 494 NYV 496 (510)
T ss_dssp CEE
T ss_pred CEE
T ss_conf 728
No 13
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=57.13 E-value=10 Score=17.65 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=43.6
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 6316748999999999999779849998299899999999852188233313322477765
Q gi|254780391|r 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG 67 (141)
Q Consensus 7 Y~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~ 67 (141)
|........++..-+......|+.|+|.|.+.+.++.|.++|=. .-|||.+......
T Consensus 439 ~~t~~~k~~aii~~i~~~~~~grPVLVgt~si~~se~ls~~L~~----~~i~h~vLnak~~ 495 (922)
T 1nkt_A 439 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK----RRIPHNVLNAKYH 495 (922)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH----TTCCCEEECSSCH
T ss_pred EECHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH----CCCCCEECCCCCH
T ss_conf 93489999999999999996499779974229889999999997----6994022130021
No 14
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 1m6n_A 1m74_A* 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=51.73 E-value=12 Score=17.12 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--------CCCEEEEECC
Q ss_conf 16748999999999999779849998299899999999852188233313322477765444--------2206998328
Q gi|254780391|r 9 FKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFS--------SFQPVLLTIS 80 (141)
Q Consensus 9 l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~--------~~~PV~i~~~ 80 (141)
.......++..-+.+..++|+.|+|.|.+.+.++.++.+|=.. =+||.+......+.. ..--|.|++.
T Consensus 413 t~~~k~~ai~~~i~~~~~~grpVLIgt~si~~se~ls~~l~~~----~i~~~vLnak~~e~Ea~iIa~AG~~G~VTIATn 488 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred ECHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHC----CCHHHHHHCCCHHHHHHHHHHHCCCCEEEEECH
T ss_conf 3148899999999999865886699984078679999998872----750666522235758999996377886999513
Q ss_pred C
Q ss_conf 6
Q gi|254780391|r 81 S 81 (141)
Q Consensus 81 ~ 81 (141)
.
T Consensus 489 m 489 (844)
T 1tf5_A 489 M 489 (844)
T ss_dssp T
T ss_pred H
T ss_conf 5
No 15
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B
Probab=49.96 E-value=13 Score=16.95 Aligned_cols=32 Identities=6% Similarity=-0.112 Sum_probs=19.3
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCCCHHHCC
Q ss_conf 99832866789981999981687782113117
Q gi|254780391|r 75 VLLTISSLNANTSTIRFLVDEASMHIGDVDYY 106 (141)
Q Consensus 75 V~i~~~~~~~~~~~~~~linl~~~~p~~~~~f 106 (141)
++++.+........+.++||.+.+.+..+..+
T Consensus 52 lylgs~~~~~~~~~i~~ViNva~e~~n~~~~~ 83 (182)
T 2j16_A 52 IYLYSEPTVKELLPFDVVINVAEEANDLRMQV 83 (182)
T ss_dssp EEEEESCCTTTTTTCSEEEECCSCC-------
T ss_pred EEECCCCCHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 16735613798769988998997689876678
No 16
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=45.58 E-value=6.8 Score=18.71 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.8
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7598989999999999999988998603
Q gi|254780391|r 113 INTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 113 v~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
|...++..|+.-|+--+.||+.||..++
T Consensus 82 Fs~~~~~~K~~i~ei~~kyk~~Gyk~E~ 109 (111)
T 2jmk_A 82 FSDIDENMKKVIKATAEKFKNKGFKVET 109 (111)
T ss_dssp ECSCCTTHHHHHHHHHHHGGGGCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 3254446899999999987537851540
No 17
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=45.36 E-value=16 Score=16.51 Aligned_cols=113 Identities=23% Similarity=0.106 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---------CC---CCCCE-EEEEC
Q ss_conf 8999999999999779849998299899999999852188233313322477765---------44---42206-99832
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG---------DF---SSFQP-VLLTI 79 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~---------~~---~~~~P-V~i~~ 79 (141)
....+.+|+.+....|+|++|+|.-...+..|-++|=. ..+++.+..+... .+ ..... ++|++
T Consensus 557 Kl~~L~~lL~~l~~~g~KvLIFsq~~~~ld~L~~~L~~----~g~~~~ridG~~~~~eR~~~i~~Fn~~~~~~~v~Llst 632 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI----KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH----HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEH
T ss_conf 99999999998600798289997147989999999862----48863688678999999999999718899964999115
Q ss_pred C--CCCCCCCCEEEEEECCCCC-C-CHHHCC-----------CEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 8--6678998199998168778-2-113117-----------57999975989899999999999
Q gi|254780391|r 80 S--SLNANTSTIRFLVDEASMH-I-GDVDYY-----------EKVVFIINTDDQGSLEWGRAHWR 129 (141)
Q Consensus 80 ~--~~~~~~~~~~~linl~~~~-p-~~~~~f-----------~rvieiv~~~d~~~~~~aR~rwk 129 (141)
. .+..|-..+..+|+....+ | ...++. -+|+-++..+.-+.+-..|.+-|
T Consensus 633 ~agg~GlNL~~A~~VI~~D~~WNP~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TvEe~i~~~~~~K 697 (800)
T 3mwy_W 633 RAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKK 697 (800)
T ss_dssp HHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 65266756444888999799989246999988667259997489999887998899999999999
No 18
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP- binding, helicase, nucleotide-binding; 2.80A {Thermus thermophilus HB27}
Probab=39.04 E-value=20 Score=15.92 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---------CCCCCEEEEECC
Q ss_conf 67489999999999997798499982998999999998521882333133224777654---------442206998328
Q gi|254780391|r 10 KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD---------FSSFQPVLLTIS 80 (141)
Q Consensus 10 ~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~---------~~~~~PV~i~~~ 80 (141)
..+....+++++.+ ..+.+++|+|.....++.|-+.|=.. .|-...+.|+-+.. ......|+++++
T Consensus 12 ~~~k~~~l~~~l~~--~~~~k~iVF~~t~~~~~~l~~~L~~~---g~~~~~ihg~~~~~~R~~~~~~F~~~~~~vlv~t~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHTT---TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHHHCCEEEECCH
T ss_conf 77399999999985--79886999989889999999999868---99789996999999999999999863340321111
Q ss_pred C--CCCCCCCEEEEEECCCCC--CCHHHCC---------CEEEEEECCCCHH
Q ss_conf 6--678998199998168778--2113117---------5799997598989
Q gi|254780391|r 81 S--LNANTSTIRFLVDEASMH--IGDVDYY---------EKVVFIINTDDQG 119 (141)
Q Consensus 81 ~--~~~~~~~~~~linl~~~~--p~~~~~f---------~rvieiv~~~d~~ 119 (141)
. ...+..++..+||..... ..+.++. .+++-++.+.+..
T Consensus 87 ~~~~Gid~~~v~~vi~~d~p~~~~~y~qr~GR~~R~g~~~~~i~~~~~~e~~ 138 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERR 138 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHH
T ss_pred HHHCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHH
T ss_conf 6550466788861267359853206788744256388998799997768999
No 19
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A
Probab=36.62 E-value=21 Score=15.69 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999999779849998299
Q gi|254780391|r 15 YNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 15 ~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
..++..++++.+.|.+|+|+|..
T Consensus 95 ~~~~~fI~~~~~~g~~VLVHC~~ 117 (176)
T 3cm3_A 95 DDVTAFLSKCDQRNEPVLVHSAA 117 (176)
T ss_dssp HHHHHHHHHHHHHTCCEEEECSS
T ss_pred HHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99999999998559989999998
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens}
Probab=33.27 E-value=24 Score=15.36 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECCCC--CC
Q ss_conf 8999999999999779849998299899999999852188233313322477765------444220699832866--78
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTISSL--NA 84 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~~~--~~ 84 (141)
....+..++++. .+.+++|+|.+.+.++.+-+.|-...-....=|+-.....- -......|+++++.- ..
T Consensus 267 k~~~l~~l~~~~--~~~k~lVF~~s~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~iLv~T~~~~~Gl 344 (414)
T 3eiq_A 267 KLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGI 344 (414)
T ss_dssp HHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--C
T ss_pred HHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 999999999845--899689995549999999999986799879981899677799999998748976999868502367
Q ss_pred CCCCEEEEEEC--CCCCCCHHHCCCE---------EEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99819999816--8778211311757---------99997598989999999999999
Q gi|254780391|r 85 NTSTIRFLVDE--ASMHIGDVDYYEK---------VVFIINTDDQGSLEWGRAHWRSL 131 (141)
Q Consensus 85 ~~~~~~~linl--~~~~p~~~~~f~r---------vieiv~~~d~~~~~~aR~rwk~y 131 (141)
+-.++..+|+. ......+.++..| ++-++. .++. ...+.--+.+
T Consensus 345 Dip~v~~VI~~~~p~s~~~yiqr~GR~gR~g~~G~~~~~~~-~~d~--~~l~~ie~~~ 399 (414)
T 3eiq_A 345 DVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT-EEDK--RTLRDIETFY 399 (414)
T ss_dssp CGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEEC-STHH--HHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCEEEEEEEC-HHHH--HHHHHHHHHH
T ss_conf 77788789996999999999998553458999569999975-8999--9999999997
No 21
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=33.22 E-value=24 Score=15.35 Aligned_cols=23 Identities=9% Similarity=-0.024 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999999779849998299
Q gi|254780391|r 15 YNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 15 ~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
..++.+++++...|.+|+|+|..
T Consensus 71 ~~~~~fI~~~~~~~~~VLVHC~~ 93 (160)
T 1yz4_A 71 KECINFIHCCRLNGGNCLVHSFA 93 (160)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETT
T ss_pred HHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999987437736768466
No 22
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
Probab=33.17 E-value=24 Score=15.35 Aligned_cols=44 Identities=18% Similarity=0.060 Sum_probs=28.5
Q ss_pred CCEEEEEECCCCHHH--HHHHHHHHHHHCCCEEEEEE-CCHHHHHHH
Q ss_conf 982799631674899--99999999997798499982-998999999
Q gi|254780391|r 1 MRTLLFYRFKNDWEY--NLLVLLQDEYEKGKRVSVQC-GSERVRDSL 44 (141)
Q Consensus 1 Mt~v~FY~l~~~~~~--~~~~L~~K~~~~~~ri~I~~-~d~~~~~~l 44 (141)
|++|.+|..+.=.-+ .++-++-..-++|+|+++.. .|.+....+
T Consensus 1 M~~Ii~f~GKGGVGKTT~aa~lA~~lA~~G~rvLlvs~~dp~~sl~~ 47 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVLPLLL 47 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEECSCSHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHC
T ss_conf 98899998998772999999999999978996899967986445443
No 23
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=32.49 E-value=25 Score=15.28 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999999779849998299
Q gi|254780391|r 15 YNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 15 ~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
..++..++++.++|++|+|+|..
T Consensus 68 ~~~~~~i~~~~~~~~~VlVHC~~ 90 (145)
T 2nt2_A 68 NDTYKFISKAKKHGSKCLVHSKM 90 (145)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHHHCCCCEEEEEECC
T ss_conf 99999999863357539999467
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=31.89 E-value=7.9 Score=18.29 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=41.9
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CC-CCCCEEEEECCC--CCCCCCCEEEEEEC
Q ss_conf 79849998299899999999852188233313322477765-----44-422069983286--67899819999816
Q gi|254780391|r 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG-----DF-SSFQPVLLTISS--LNANTSTIRFLVDE 95 (141)
Q Consensus 27 ~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~-----~~-~~~~PV~i~~~~--~~~~~~~~~~linl 95 (141)
.+.+++|+|.+.++++.|-..|+........=|+-.....- .. .....|+++++. ...+-+++...|+.
T Consensus 258 ~~~k~lIf~~s~~~a~~l~~~l~~~~~~~~~~~~~l~~~~R~~~~~~f~~~~~~ilv~T~~l~~GiDip~v~~VI~~ 334 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 334 (394)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCEEEEE
T ss_conf 78838999556788999999887538764343578799999999999862354289740254435777788789996
No 25
>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} SCOP: c.136.1.1
Probab=31.19 E-value=26 Score=15.15 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3117579999759898999999999999998899860
Q gi|254780391|r 103 VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 (141)
Q Consensus 103 ~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~ 139 (141)
..++.+|+.++| +|+.-++.++.--+.....|+.++
T Consensus 59 ~~~~~~Vil~~D-~D~aG~~~~~k~~~~L~~~g~~v~ 94 (118)
T 1t6t_1 59 EGKWEKVILLFD-LDTHGERINQKMKELLSSQGFLVD 94 (118)
T ss_dssp TTTCSEEEECCC-SSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHCCCEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 864893899867-888899999999999998779137
No 26
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=30.17 E-value=27 Score=15.04 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCH
Q ss_conf 999999999997798499982998
Q gi|254780391|r 15 YNLLVLLQDEYEKGKRVSVQCGSE 38 (141)
Q Consensus 15 ~~~~~L~~K~~~~~~ri~I~~~d~ 38 (141)
..++.+++++...|++|+|+|..-
T Consensus 76 ~~~~~~I~~~~~~~~~VLVhC~~G 99 (164)
T 2hcm_A 76 EPTCAAMEAAVRDGGSCLVYCKNG 99 (164)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSS
T ss_pred HHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 999998998873376599985899
No 27
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=30.03 E-value=28 Score=15.03 Aligned_cols=121 Identities=17% Similarity=0.046 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEEECC--CC
Q ss_conf 74899999999999977984999829989999999985218823331332247776------54442206998328--66
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLLTIS--SL 82 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i~~~--~~ 82 (141)
++....+.+++. ..+.+++|+|...+.++.|-+.|=...-....=|+-..... .-......|+++++ ..
T Consensus 40 ~~K~~~L~~~l~---~~~~kvlIF~~~~~~~~~l~~~L~~~g~~~~~ihg~~~~~eR~~~~~~f~~g~~~ilv~t~~~~~ 116 (191)
T 2p6n_A 40 EAKMVYLLECLQ---KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116 (191)
T ss_dssp GGHHHHHHHHHT---TSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHT
T ss_pred HHHHHHHHHHHH---HCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECEEEE
T ss_conf 899999999984---48999999989999999999999878997999979899999999998753124437886100350
Q ss_pred CCCCCCEEEEEECCCCC--CCHHHCCC---------EEEEEECCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 78998199998168778--21131175---------79999759898999999999999998899
Q gi|254780391|r 83 NANTSTIRFLVDEASMH--IGDVDYYE---------KVVFIINTDDQGSLEWGRAHWRSLKNSGY 136 (141)
Q Consensus 83 ~~~~~~~~~linl~~~~--p~~~~~f~---------rvieiv~~~d~~~~~~aR~rwk~yk~~G~ 136 (141)
..+-.++...||.+... ..+.++-. .++-++.+..++ ...+...+.++..+=
T Consensus 117 Gid~~~~~~VI~~d~p~~~~~yiQr~GR~gR~g~~g~~i~~~~~~~d~--~~~~~l~~~l~~~~q 179 (191)
T 2p6n_A 117 GLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE--SVLMDLKALLLEAKQ 179 (191)
T ss_dssp TCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH--HHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHH--HHHHHHHHHHHHCCC
T ss_conf 257888508999079999999988846668689960899998980079--999999999998479
No 28
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=29.03 E-value=29 Score=14.92 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999999999779849998299
Q gi|254780391|r 14 EYNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 14 ~~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
...++..++++..+|.+|+|+|..
T Consensus 69 ~~~~~~fI~~~~~~g~~VLVHC~~ 92 (211)
T 2g6z_A 69 FQEAIDFIDCVREKGGKVLVHSEA 92 (211)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999999889998649879998388
No 29
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=28.90 E-value=29 Score=14.91 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCC-----CC-CCCCCEEEEECCC--
Q ss_conf 748999999999999779849998299899999999852188-23331332247776-----54-4422069983286--
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWK-KDGFLPHGVDVGDE-----GD-FSSFQPVLLTISS-- 81 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~-~~sFiPH~~~~~~~-----~~-~~~~~PV~i~~~~-- 81 (141)
.+....+..|+.+. .+.|++|+|.+...++.+-+.|=... +-..+ |+-..... .. ......|+++++.
T Consensus 16 ~~kl~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~g~~~~~i-hg~~~~~~R~~~~~~F~~g~~~vlv~T~~~~ 92 (212)
T 3eaq_A 16 RGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQAL-HGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp TSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEE-CSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred HHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHHHCCCEEEEEECHHHH
T ss_conf 76999999999857--98979999797899999999998689978998-7999999999999886348754787301343
Q ss_pred CCCCCCCEEEEEECCCCC-C-CHHHC---------CCEEEEEECCCCH
Q ss_conf 678998199998168778-2-11311---------7579999759898
Q gi|254780391|r 82 LNANTSTIRFLVDEASMH-I-GDVDY---------YEKVVFIINTDDQ 118 (141)
Q Consensus 82 ~~~~~~~~~~linl~~~~-p-~~~~~---------f~rvieiv~~~d~ 118 (141)
...+-..+.+++|..... + .+.++ -.+++-++.++|.
T Consensus 93 ~Gid~~~~~~Vi~~d~p~~~~~~~qr~GR~gR~g~~~~~i~l~~~~d~ 140 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRER 140 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGH
T ss_pred CCCCCCCCCHHHHCCCCCCHHHHHHHHCHHCCCCCCCEEEEEECHHHH
T ss_conf 243202641554416999988999996650347789879999784589
No 30
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=27.98 E-value=30 Score=14.81 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=11.9
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 798499982998999999998521
Q gi|254780391|r 27 KGKRVSVQCGSERVRDSLNEYLWT 50 (141)
Q Consensus 27 ~~~ri~I~~~d~~~~~~lD~~LW~ 50 (141)
.+.+++|+|++.++++.+-+.|-.
T Consensus 176 ~~gk~LVF~~s~~~~e~la~~L~~ 199 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 589889998959999999999985
No 31
>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, PSI-2, protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}
Probab=27.47 E-value=31 Score=14.76 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=4.3
Q ss_pred HHHHHCCCEEEEEE
Q ss_conf 99997798499982
Q gi|254780391|r 22 QDEYEKGKRVSVQC 35 (141)
Q Consensus 22 ~K~~~~~~ri~I~~ 35 (141)
+++...|.+|+|+|
T Consensus 119 ~~~~~~~~~VLVHC 132 (195)
T 2q05_A 119 SKCDQRNEPVLVHC 132 (195)
T ss_dssp HHHHHTTCCEEEEC
T ss_pred HHHHHCCCEEEEEC
T ss_conf 99986399599987
No 32
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=26.65 E-value=32 Score=14.67 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999999999779849998299
Q gi|254780391|r 14 EYNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 14 ~~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
...++..++++...|.+|+|+|..
T Consensus 83 ~~~~~~fI~~~~~~~~~VLVHC~~ 106 (188)
T 2esb_A 83 FDPIADHIHSVEMKQGRTLLHCAA 106 (188)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 999999999998568718998188
No 33
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=25.67 E-value=33 Score=14.56 Aligned_cols=39 Identities=21% Similarity=0.091 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 899999999999977984999829989999999985218
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~ 51 (141)
...++.+|+++....|+|++|+|.....+.-|-.+|..-
T Consensus 110 K~~~l~~ll~~~~~~~~kvlIfsq~~~~Ldlle~~l~~~ 148 (328)
T 3hgt_A 110 KFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN 148 (328)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 099999999998746975999978689999999999977
No 34
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specificity phosphatase; 1.88A {Homo sapiens}
Probab=25.14 E-value=34 Score=14.50 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999999779849998299
Q gi|254780391|r 16 NLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 16 ~~~~L~~K~~~~~~ri~I~~~d 37 (141)
.++.+++++...|.+|+|+|..
T Consensus 91 ~~~~fI~~~~~~g~~VLVHC~~ 112 (190)
T 2wgp_A 91 TVADKIHSVSRKHGATLVHCAA 112 (190)
T ss_dssp HHHHHHHHHHHTTCCEEEECSS
T ss_pred HHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999999863368518998788
No 35
>3gfp_A DEAD box protein 5; mRNA export, ATPase, RECA-fold, ATP-binding, cytoplasm, helicase, hydrolase, membrane, mRNA transport; 1.80A {Saccharomyces cerevisiae} PDB: 2kbf_A
Probab=23.85 E-value=36 Score=14.35 Aligned_cols=89 Identities=17% Similarity=0.048 Sum_probs=50.0
Q ss_pred EEECCC---CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEE
Q ss_conf 963167---489999999999997798499982998999999998521882333133224777654------44220699
Q gi|254780391|r 6 FYRFKN---DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVL 76 (141)
Q Consensus 6 FY~l~~---~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~ 76 (141)
||.... +....++.|++.. ...+++|+|.+...++.|-+.|=...-....=|+-.....-. ......|+
T Consensus 14 ~~i~~~~~~~K~~~L~~ll~~~--~~~k~lIF~~s~~~~~~l~~~L~~~g~~~~~ih~~~~~~~R~~~~~~f~~~~~~il 91 (189)
T 3gfp_A 14 LYMDCKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVL 91 (189)
T ss_dssp EEEECSSTTHHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 9999598899999999999738--99979999797899999999998689989999799999999999988514885156
Q ss_pred EECCC--CCCCCCCEEEEEECC
Q ss_conf 83286--678998199998168
Q gi|254780391|r 77 LTISS--LNANTSTIRFLVDEA 96 (141)
Q Consensus 77 i~~~~--~~~~~~~~~~linl~ 96 (141)
++++. ...+-..+..++|..
T Consensus 92 v~T~~~~~Gid~~~~~~vi~~d 113 (189)
T 3gfp_A 92 ITTNVLARGIDIPTVSMVVNYD 113 (189)
T ss_dssp EEETTTTTSTTCCCCSEEEESS
T ss_pred EEEECCCCCCCCCCEEEEEEEC
T ss_conf 6640122544524551899947
No 36
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=23.78 E-value=36 Score=14.34 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999999779849998299
Q gi|254780391|r 17 LLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 17 ~~~L~~K~~~~~~ri~I~~~d 37 (141)
++..++++.+.|.+|+|.|..
T Consensus 76 a~~fI~~~~~~~~~VLVHC~a 96 (161)
T 3emu_A 76 AIKFIIRSIQRKEGVLIISGT 96 (161)
T ss_dssp HHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999999876169779998167
No 37
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 1mkp_A
Probab=21.98 E-value=39 Score=14.12 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=11.5
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999999779849998299
Q gi|254780391|r 17 LLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 17 ~~~L~~K~~~~~~ri~I~~~d 37 (141)
+..+++++.++|.+|+|.|..
T Consensus 74 ~~~~i~~~~~~~~~VlVHC~~ 94 (155)
T 2hxp_A 74 AIEFIDEALSQNCGVLVHSLA 94 (155)
T ss_dssp HHHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHHCCCEEEEECCC
T ss_conf 999888776225537888135
No 38
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=21.97 E-value=39 Score=14.12 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=10.3
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999999779849998299
Q gi|254780391|r 17 LLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 17 ~~~L~~K~~~~~~ri~I~~~d 37 (141)
++..++++.+.|.+|+|+|..
T Consensus 79 ~~~fi~~~~~~g~~VLVHC~~ 99 (154)
T 2r0b_A 79 TKEFIDGSLQMGGKVLVHGNA 99 (154)
T ss_dssp HHHHHHHHHHTTCCEEEECSS
T ss_pred HHHHHHHHHHCCCEEEEECCC
T ss_conf 999988776347728998787
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=21.15 E-value=41 Score=14.02 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 899999999999977984999829989999999985218
Q gi|254780391|r 13 WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW 51 (141)
Q Consensus 13 ~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~ 51 (141)
...++..|+.+++..|.|++|++|..+-+.++-+.|-..
T Consensus 33 T~~~l~~il~~~~~~~~rvLvL~PtR~La~Qv~e~L~~~ 71 (451)
T 2jlq_A 33 TKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCC
T ss_conf 899999999998707986999850999999999997387
Done!