HHSEARCH alignment of GI: 254780391 and SCOP domain: d1em8a_

Alignment
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=3.8e-41  Score=265.72  Aligned_cols=135  Identities=19%  Similarity=0.368  Sum_probs=120.5

Q ss_pred             CCEEEEEECCCC--------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             982799631674--------899999999999977984999829989999999985218823331332247776544422
Q gi|254780391|r    1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF   72 (141)
Q Consensus         1 Mt~v~FY~l~~~--------~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~   72 (141)
                      ||+|+||+|.++        .+.++|||++|+|++|+|++|+|+|+++++.||++||+|+++|||||++.+++.   ...
T Consensus         1 Mt~v~FY~L~~~~~~~~l~~~~~~~crL~~K~~~~g~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~~---~~~   77 (147)
T d1em8a_           1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---RGG   77 (147)
T ss_dssp             CEEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCSS---TTC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCC
T ss_conf             98269998579865667778999999999999977997999939999999999998579974364433367886---678


Q ss_pred             CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             06998328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r   73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV  140 (141)
Q Consensus        73 ~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~  140 (141)
                      +||+|++....++.. .++|||+++..|+++++|+|++|||+ +|++.++.||+|||+||++||+++.
T Consensus        78 ~PI~l~~~~~~~~~~-~dvlinl~~~~p~~~~~f~Rvieiv~-~de~~~~~aR~rwk~yk~~G~~l~~  143 (147)
T d1em8a_          78 APVEIAWPQKRSSSR-RDILISLRTSFADFATAFTEVVDFVP-YEDSLKQLARERYKAYRVAGFNLNT  143 (147)
T ss_dssp             CSEEEECTTSCCCSC-CSEEEECCSSCCGGGGGCSEEEEEEC-SSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             CCEEECCCCCCCCCC-CEEEEECCCCCCHHHHCCCEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             988723787778866-62999999989403213388999979-6999999999999999987998611


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: DNA polymerase III chi subunit
superfamily: DNA polymerase III chi subunit
family: DNA polymerase III chi subunit
domain: DNA polymerase III chi subunit
species: Escherichia coli [TaxId: 562]