Query gi|254780391|ref|YP_003064804.1| DNA polymerase III subunit chi [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs 108 out of 530
Neff 7.4
Searched_HMMs 13730
Date Wed Jun 1 04:06:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780391.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1em8a_ c.128.1.1 (A:) DNA pol 100.0 3.8E-41 2.8E-45 265.7 15.7 135 1-140 1-143 (147)
2 d1s2ma2 c.37.1.19 (A:252-422) 93.9 0.13 9.8E-06 27.5 7.4 109 6-116 10-139 (171)
3 d1tf5a4 c.37.1.19 (A:396-570) 88.4 0.46 3.3E-05 24.3 5.3 54 8-65 14-67 (175)
4 d1fuka_ c.37.1.19 (A:) Initiat 86.2 1 7.5E-05 22.2 9.2 106 11-118 12-136 (162)
5 d1nkta4 c.37.1.19 (A:397-615) 84.6 1.2 8.9E-05 21.7 5.9 80 8-94 14-101 (219)
6 d2j0sa2 c.37.1.19 (A:244-411) 81.2 1.7 0.00012 20.9 8.2 90 6-97 11-111 (168)
7 d1oywa3 c.37.1.19 (A:207-406) 71.1 3.2 0.00023 19.3 7.4 89 6-96 8-106 (200)
8 d1t5ia_ c.37.1.19 (A:) Spliceo 62.6 4.7 0.00034 18.2 5.3 89 6-96 5-103 (168)
9 d2rb4a1 c.37.1.19 (A:307-474) 55.8 6.2 0.00045 17.5 9.8 89 6-96 9-108 (168)
10 d1jr6a_ c.37.1.14 (A:) HCV hel 54.1 6.6 0.00048 17.3 6.2 55 26-81 33-87 (138)
11 d1hv8a2 c.37.1.19 (A:211-365) 49.6 7.7 0.00056 16.9 9.8 106 11-119 14-138 (155)
12 d1c4oa2 c.37.1.19 (A:410-583) 47.3 8.4 0.00061 16.7 13.6 126 16-141 19-174 (174)
13 d1a1va2 c.37.1.14 (A:326-624) 45.6 9 0.00065 16.5 6.4 36 27-62 35-70 (299)
14 d1t6t1_ c.136.1.1 (1:) Hypothe 39.5 11 0.00081 16.0 3.9 36 103-139 55-90 (108)
15 d1z5za1 c.37.1.19 (A:663-906) 35.2 13 0.00095 15.6 5.8 37 12-48 69-105 (244)
16 d1mkpa_ c.45.1.1 (A:) Mapk pho 27.1 18 0.0013 14.7 4.0 23 15-37 70-92 (144)
17 d1wp9a2 c.37.1.19 (A:201-486) 26.7 18 0.0013 14.7 6.7 107 13-119 144-278 (286)
18 d2p6ra4 c.37.1.19 (A:203-403) 26.3 19 0.0014 14.6 5.0 32 17-48 29-60 (201)
19 d1m3ga_ c.45.1.1 (A:) Mapk pho 24.6 20 0.0015 14.4 3.2 24 14-37 67-90 (145)
20 d2idba2 d.333.1.1 (A:326-491) 24.2 20 0.0015 14.4 2.7 99 16-131 52-163 (166)
21 d2b2na1 c.37.1.19 (A:26-333) T 22.4 22 0.0016 14.2 4.5 36 19-54 4-40 (308)
22 d2eyqa5 c.37.1.19 (A:779-989) 22.3 22 0.0016 14.2 4.8 125 7-134 11-158 (211)
23 d1gm5a4 c.37.1.19 (A:550-755) 21.8 15 0.0011 15.2 1.1 90 7-97 8-118 (206)
No 1
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.8e-41 Score=265.72 Aligned_cols=135 Identities=19% Similarity=0.368 Sum_probs=120.5
Q ss_pred CCEEEEEECCCC--------HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 982799631674--------899999999999977984999829989999999985218823331332247776544422
Q gi|254780391|r 1 MRTLLFYRFKND--------WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSF 72 (141)
Q Consensus 1 Mt~v~FY~l~~~--------~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~ 72 (141)
||+|+||+|.++ .+.++|||++|+|++|+|++|+|+|+++++.||++||+|+++|||||++.+++. ...
T Consensus 1 Mt~v~FY~L~~~~~~~~l~~~~~~~crL~~K~~~~g~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~~---~~~ 77 (147)
T d1em8a_ 1 MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---RGG 77 (147)
T ss_dssp CEEEEEEECSCCCCBTTBCHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCSS---TTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCC
T ss_conf 98269998579865667778999999999999977997999939999999999998579974364433367886---678
Q ss_pred CEEEEECCCCCCCCCCEEEEEECCCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 06998328667899819999816877821131175799997598989999999999999988998603
Q gi|254780391|r 73 QPVLLTISSLNANTSTIRFLVDEASMHIGDVDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPDV 140 (141)
Q Consensus 73 ~PV~i~~~~~~~~~~~~~~linl~~~~p~~~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~~ 140 (141)
+||+|++....++.. .++|||+++..|+++++|+|++|||+ +|++.++.||+|||+||++||+++.
T Consensus 78 ~PI~l~~~~~~~~~~-~dvlinl~~~~p~~~~~f~Rvieiv~-~de~~~~~aR~rwk~yk~~G~~l~~ 143 (147)
T d1em8a_ 78 APVEIAWPQKRSSSR-RDILISLRTSFADFATAFTEVVDFVP-YEDSLKQLARERYKAYRVAGFNLNT 143 (147)
T ss_dssp CSEEEECTTSCCCSC-CSEEEECCSSCCGGGGGCSEEEEEEC-SSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEECCCCCCCCCC-CEEEEECCCCCCHHHHCCCEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 988723787778866-62999999989403213388999979-6999999999999999987998611
No 2
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.89 E-value=0.13 Score=27.52 Aligned_cols=109 Identities=11% Similarity=0.072 Sum_probs=67.0
Q ss_pred EEECC--CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEE
Q ss_conf 96316--74899999999999977984999829989999999985218823331332247776------54442206998
Q gi|254780391|r 6 FYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLL 77 (141)
Q Consensus 6 FY~l~--~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i 77 (141)
||... ++...++..|+++. .+.+++|+|.+..+++.|-..|+...-....=|+-..... .-......|++
T Consensus 10 ~yi~v~~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv 87 (171)
T d1s2ma2 10 YYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 87 (171)
T ss_dssp EEEECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEE
T ss_pred EEEECCHHHHHHHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 999948899999999999848--987659997224135676776501334433343332114566553211368631101
Q ss_pred ECC--CCCCCCCCEEEEEECCCCC-C-CHH---------HCCCEEEEEECCC
Q ss_conf 328--6678998199998168778-2-113---------1175799997598
Q gi|254780391|r 78 TIS--SLNANTSTIRFLVDEASMH-I-GDV---------DYYEKVVFIINTD 116 (141)
Q Consensus 78 ~~~--~~~~~~~~~~~linl~~~~-p-~~~---------~~f~rvieiv~~~ 116 (141)
+++ ....+-.++..+||..... + .+. .+-..++-+|.+.
T Consensus 88 ~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~ 139 (171)
T d1s2ma2 88 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN 139 (171)
T ss_dssp ESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGG
T ss_pred CHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECHH
T ss_conf 2017654104662489996487602777877755314179961799985789
No 3
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=88.38 E-value=0.46 Score=24.30 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=43.7
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 3167489999999999997798499982998999999998521882333133224777
Q gi|254780391|r 8 RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGD 65 (141)
Q Consensus 8 ~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~ 65 (141)
........++..-+.+...+|+.|+|.|.+.+.++.|+.+| ..--|||.+....
T Consensus 14 ~T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L----~~~gi~h~vLnAk 67 (175)
T d1tf5a4 14 RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLL----KNKGIPHQVLNAK 67 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHH----HTTTCCCEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH----HHCCCCCEEEHHH
T ss_conf 17999999999999999965998899968199999999999----9759971221022
No 4
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=86.18 E-value=1 Score=22.19 Aligned_cols=106 Identities=10% Similarity=0.018 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECCC--C
Q ss_conf 748999999999999779849998299899999999852188233313322477765------44422069983286--6
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTISS--L 82 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~~--~ 82 (141)
+.....+..|++.. .+.+++|+|.+...++.+-+.|....-....=|+-.....- -......|+++++- .
T Consensus 12 e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv~~r 89 (162)
T d1fuka_ 12 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 89 (162)
T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred HHHHHHHHHHHHHC--CCCCEEEEEEEECHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 78999999999848--9885899998870699999888654955999516775236778999876403645651562344
Q ss_pred CCCCCCEEEEEECCC-CCC-CHHHCCCE---------EEEEECCCCH
Q ss_conf 789981999981687-782-11311757---------9999759898
Q gi|254780391|r 83 NANTSTIRFLVDEAS-MHI-GDVDYYEK---------VVFIINTDDQ 118 (141)
Q Consensus 83 ~~~~~~~~~linl~~-~~p-~~~~~f~r---------vieiv~~~d~ 118 (141)
..+-.++..+||... ..+ .++.+-.| ++-++.+.|.
T Consensus 90 GiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~ 136 (162)
T d1fuka_ 90 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 136 (162)
T ss_dssp TCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEECCHHHH
T ss_conf 65577750899934514677887650144547986479998179999
No 5
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=84.64 E-value=1.2 Score=21.75 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=54.9
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCEEEEEC
Q ss_conf 3167489999999999997798499982998999999998521882333133224777654442--------20699832
Q gi|254780391|r 8 RFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSS--------FQPVLLTI 79 (141)
Q Consensus 8 ~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~--------~~PV~i~~ 79 (141)
........++..-+.....+|+.|+|-+.+.+.++.|+.+|=.. =|||.+....+....+ .--|.|++
T Consensus 14 ~T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~----gi~h~vLNAK~herEAeIIAqAG~~GaVTIAT 89 (219)
T d1nkta4 14 KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR----RIPHNVLNAKYHEQEATIIAVAGRRGGVTVAT 89 (219)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT----TCCCEEECSSCHHHHHHHHHTTTSTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH----CCCHHCCCHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 47899999999999999966998899617599999999999872----53432241046888889999646688379620
Q ss_pred CCCCCCCCCEEEEEE
Q ss_conf 866789981999981
Q gi|254780391|r 80 SSLNANTSTIRFLVD 94 (141)
Q Consensus 80 ~~~~~~~~~~~~lin 94 (141)
+. .+...|+.+.
T Consensus 90 NM---AGRGTDI~LG 101 (219)
T d1nkta4 90 NM---AGRGTDIVLG 101 (219)
T ss_dssp TT---CSTTCCCCTT
T ss_pred CC---CCCCCCEEEC
T ss_conf 00---4787764646
No 6
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.16 E-value=1.7 Score=20.92 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=57.5
Q ss_pred EEEC-CC--CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEE
Q ss_conf 9631-67--48999999999999779849998299899999999852188233313322477765------444220699
Q gi|254780391|r 6 FYRF-KN--DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVL 76 (141)
Q Consensus 6 FY~l-~~--~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~ 76 (141)
||.. .+ +....++.|+++. .+.+++|+|.+...++.+-+.|=........=|+-.....- -......|+
T Consensus 11 ~~v~v~~~~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iL 88 (168)
T d2j0sa2 11 FFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 88 (168)
T ss_dssp EEEEESSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred EEEEECCHHHHHHHHHHHHHHC--CCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9999668699999999999847--87763999605888788887766304431333112257899999999863884077
Q ss_pred EECC--CCCCCCCCEEEEEECCC
Q ss_conf 8328--66789981999981687
Q gi|254780391|r 77 LTIS--SLNANTSTIRFLVDEAS 97 (141)
Q Consensus 77 i~~~--~~~~~~~~~~~linl~~ 97 (141)
++++ ....+-.++..+||.+.
T Consensus 89 v~Td~~~rGiDi~~v~~VIn~d~ 111 (168)
T d2j0sa2 89 ISTDVWARGLDVPQVSLIINYDL 111 (168)
T ss_dssp EECGGGSSSCCCTTEEEEEESSC
T ss_pred ECCCHHCCCCCCCCCCEEEEECC
T ss_conf 41441005655357656899337
No 7
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=71.08 E-value=3.2 Score=19.25 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=54.3
Q ss_pred EEECC--CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCCCEEEE
Q ss_conf 96316--74899999999999977984999829989999999985218823331332247776------54442206998
Q gi|254780391|r 6 FYRFK--NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDE------GDFSSFQPVLL 77 (141)
Q Consensus 6 FY~l~--~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~------~~~~~~~PV~i 77 (141)
+|... .+....+.+++.. ..+.+++|+|+....++.|-+.|=...-....=|+-..... .-......|++
T Consensus 8 ~y~v~~~~~k~~~L~~~l~~--~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilv 85 (200)
T d1oywa3 8 RYMLMEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVV 85 (200)
T ss_dssp EEEEEECSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEEECCCCHHHHHHHHHHH--CCCCCEEEEEEEEHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 79997187689999999985--6999889998223116776443244785357753887177789999887413430787
Q ss_pred ECCC--CCCCCCCEEEEEECC
Q ss_conf 3286--678998199998168
Q gi|254780391|r 78 TISS--LNANTSTIRFLVDEA 96 (141)
Q Consensus 78 ~~~~--~~~~~~~~~~linl~ 96 (141)
+++. ...+-+++...||..
T Consensus 86 aTd~~~~GiD~p~v~~VI~~~ 106 (200)
T d1oywa3 86 ATVAFGMGINKPNVRFVVHFD 106 (200)
T ss_dssp ECTTSCTTTCCTTCCEEEESS
T ss_pred ECCHHHHCCCCCCCCEEEECC
T ss_conf 402345316887888999877
No 8
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.57 E-value=4.7 Score=18.22 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=51.6
Q ss_pred EEEC--CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEE
Q ss_conf 9631--6748999999999999779849998299899999999852188233313322477765------4442206998
Q gi|254780391|r 6 FYRF--KNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLL 77 (141)
Q Consensus 6 FY~l--~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i 77 (141)
||.. .++....++.|++.. .+.+++|+|+..+.++.|-+.|=......-.=|+-.....- -.....+|++
T Consensus 5 ~~v~~~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv 82 (168)
T d1t5ia_ 5 YYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 82 (168)
T ss_dssp EEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEEECHHHHHHHHHHHHHHC--CCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 999947599999999999838--998199998034411013334301244432111222102222112211122211441
Q ss_pred ECCC--CCCCCCCEEEEEECC
Q ss_conf 3286--678998199998168
Q gi|254780391|r 78 TISS--LNANTSTIRFLVDEA 96 (141)
Q Consensus 78 ~~~~--~~~~~~~~~~linl~ 96 (141)
+++. ...+-..+..++|.+
T Consensus 83 ~T~~~~~Gid~~~~~~vi~~~ 103 (168)
T d1t5ia_ 83 ATNLFGRGMDIERVNIAFNYD 103 (168)
T ss_dssp ESSCCSTTCCGGGCSEEEESS
T ss_pred CCCCCCCHHHCCCCHHHHHHH
T ss_conf 233011001204413443221
No 9
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.78 E-value=6.2 Score=17.51 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=55.1
Q ss_pred EEECCCC---HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEE
Q ss_conf 9631674---89999999999997798499982998999999998521882333133224777654------44220699
Q gi|254780391|r 6 FYRFKND---WEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVL 76 (141)
Q Consensus 6 FY~l~~~---~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~ 76 (141)
||...++ ....++.|++. . ...+++|+|...+.++.|...|=...-....=|+-.....-. ......|+
T Consensus 9 ~y~~~~~~~~K~~~L~~ll~~-~-~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~il 86 (168)
T d2rb4a1 9 YYVLCEHRKDKYQALCNIYGS-I-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVL 86 (168)
T ss_dssp EEEECSSHHHHHHHHHHHHTT-S-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHH-C-CCCCEEEECCHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999959888999999999986-7-98857997188899999999998647762102331156777877633137960034
Q ss_pred EECCC--CCCCCCCEEEEEECC
Q ss_conf 83286--678998199998168
Q gi|254780391|r 77 LTISS--LNANTSTIRFLVDEA 96 (141)
Q Consensus 77 i~~~~--~~~~~~~~~~linl~ 96 (141)
++++. ...+-.++...||..
T Consensus 87 v~Td~~~~Gid~~~v~~Vi~yd 108 (168)
T d2rb4a1 87 ITTNVCARGIDVKQVTIVVNFD 108 (168)
T ss_dssp EECCSCCTTTCCTTEEEEEESS
T ss_pred ECHHHHHHHHCCCCCCEEEEEC
T ss_conf 1124543211046642798525
No 10
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=54.07 E-value=6.6 Score=17.34 Aligned_cols=55 Identities=16% Similarity=0.003 Sum_probs=37.0
Q ss_pred HCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 77984999829989999999985218823331332247776544422069983286
Q gi|254780391|r 26 EKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGDFSSFQPVLLTISS 81 (141)
Q Consensus 26 ~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~~~~~~PV~i~~~~ 81 (141)
.++.+++|+|.+...++.|-+.|-...-....=|+-... ..-......|+++++.
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~-~~~~~~~~~vlvaTd~ 87 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-SVIPTNGDVVVVATDA 87 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCS-CCCTTSSCEEEEESSS
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHCCCHH-HHHHHHHCCEEEHHHH
T ss_conf 089989999095899999999983526320334235305-4432331121410688
No 11
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=49.62 E-value=7.7 Score=16.92 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEECCC--C
Q ss_conf 7489999999999997798499982998999999998521882333133224777654------4422069983286--6
Q gi|254780391|r 11 NDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEGD------FSSFQPVLLTISS--L 82 (141)
Q Consensus 11 ~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~~------~~~~~PV~i~~~~--~ 82 (141)
.+....+++|+.. .+.+++|+|.+.+.++.+-+.|=...-....=|+-.....-. ......|+++++. +
T Consensus 14 ~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~~~~ 90 (155)
T d1hv8a2 14 NERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSR 90 (155)
T ss_dssp GGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHH
T ss_pred HHHHHHHHHHHCC---CCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf 9999999999726---9998999979448998887652334322223333100113456665541211125530367765
Q ss_pred CCCCCCEEEEEECC-CCCCC-HHH---------CCCEEEEEECCCCHH
Q ss_conf 78998199998168-77821-131---------175799997598989
Q gi|254780391|r 83 NANTSTIRFLVDEA-SMHIG-DVD---------YYEKVVFIINTDDQG 119 (141)
Q Consensus 83 ~~~~~~~~~linl~-~~~p~-~~~---------~f~rvieiv~~~d~~ 119 (141)
..+-.++..+||.. |..+. +.+ +=.+++-++++.|..
T Consensus 91 Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~ 138 (155)
T d1hv8a2 91 GIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYK 138 (155)
T ss_dssp HCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHH
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHH
T ss_conf 432212767999649999999998877637479973699998668999
No 12
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=47.31 E-value=8.4 Score=16.70 Aligned_cols=126 Identities=12% Similarity=0.085 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCCCCEEEEECC--CCCCCCC
Q ss_conf 9999999999779849998299899999999852188233313322477765------4442206998328--6678998
Q gi|254780391|r 16 NLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVDVGDEG------DFSSFQPVLLTIS--SLNANTS 87 (141)
Q Consensus 16 ~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~~~~~~------~~~~~~PV~i~~~--~~~~~~~ 87 (141)
.+..-+.+..+.|.+++|+|.+..+++.|.+.|=...-.+-.=|+-....+- -.....+|++++. .+..+-+
T Consensus 19 dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip 98 (174)
T d1c4oa2 19 DLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIP 98 (174)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCT
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCC
T ss_conf 99999999986598389998230379999999986597258986155418899999999779869999635642113677
Q ss_pred CEEEEEECCCCC---CC----HHHCC--------CEEEEEECCCCHHHH----HHHHHHH---HHHHHCCCCCCCC
Q ss_conf 199998168778---21----13117--------579999759898999----9999999---9999889986039
Q gi|254780391|r 88 TIRFLVDEASMH---IG----DVDYY--------EKVVFIINTDDQGSL----EWGRAHW---RSLKNSGYAPDVI 141 (141)
Q Consensus 88 ~~~~linl~~~~---p~----~~~~f--------~rvieiv~~~d~~~~----~~aR~rw---k~yk~~G~~~~~v 141 (141)
++.+++|..+.- |. +.++. ..++.+.+...+..+ +..|.|- ++=+..|..|+.|
T Consensus 99 ~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g~~~~~~~~~~~~~~~~i~et~rRr~iq~~~N~~h~i~p~~i 174 (174)
T d1c4oa2 99 EVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETV 174 (174)
T ss_dssp TEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7738998036544553016779988614430478706896267778999999999878999999999679999969
No 13
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=45.56 E-value=9 Score=16.53 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 798499982998999999998521882333133224
Q gi|254780391|r 27 KGKRVSVQCGSERVRDSLNEYLWTWKKDGFLPHGVD 62 (141)
Q Consensus 27 ~~~ri~I~~~d~~~~~~lD~~LW~~~~~sFiPH~~~ 62 (141)
++.|++|+|.+...++.|-..|=...-.++.-|+-.
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hggl 70 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGL 70 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 699899987968999999999977798789975894
No 14
>d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex aeolicus [TaxId: 63363]}
Probab=39.54 E-value=11 Score=15.96 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3117579999759898999999999999998899860
Q gi|254780391|r 103 VDYYEKVVFIINTDDQGSLEWGRAHWRSLKNSGYAPD 139 (141)
Q Consensus 103 ~~~f~rvieiv~~~d~~~~~~aR~rwk~yk~~G~~~~ 139 (141)
...+.+|+.++| +|..-+..|..-.+.++..|+.++
T Consensus 55 ~~~~~~vii~~D-~D~aG~~aa~kl~~~L~~~g~~vd 90 (108)
T d1t6t1_ 55 EGKWEKVILLFD-LDTHGERINQKMKELLSSQGFLVD 90 (108)
T ss_dssp TTTCSEEEECCC-SSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHCCCEEEEEEC-CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 952894999968-998999999999999998699778
No 15
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=35.23 E-value=13 Score=15.55 Aligned_cols=37 Identities=3% Similarity=0.192 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 4899999999999977984999829989999999985
Q gi|254780391|r 12 DWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYL 48 (141)
Q Consensus 12 ~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~L 48 (141)
.....+..++......|.+++|+|.-.+..+.+.+.|
T Consensus 69 ~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l 105 (244)
T d1z5za1 69 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNII 105 (244)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECEEHHHHHHHHH
T ss_conf 6899999988764146662599960100677899998
No 16
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}
Probab=27.12 E-value=18 Score=14.72 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99999999999779849998299
Q gi|254780391|r 15 YNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 15 ~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
..+...++++.+.|.+|+|+|..
T Consensus 70 ~~~~~~i~~~~~~~~~VlVHC~~ 92 (144)
T d1mkpa_ 70 PEAISFIDEARGKNCGVLVHSLA 92 (144)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99999887766226338999555
No 17
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=26.66 E-value=18 Score=14.67 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCC-----------C-CCCCEEE
Q ss_conf 89999999999997--798499982998999999998521--882333133224777654-----------4-4220699
Q gi|254780391|r 13 WEYNLLVLLQDEYE--KGKRVSVQCGSERVRDSLNEYLWT--WKKDGFLPHGVDVGDEGD-----------F-SSFQPVL 76 (141)
Q Consensus 13 ~~~~~~~L~~K~~~--~~~ri~I~~~d~~~~~~lD~~LW~--~~~~sFiPH~~~~~~~~~-----------~-~~~~PV~ 76 (141)
....+.+++.+.+. .+.+++|+|...+.++.+-+.|=. ++...+..+.......+. + .....|+
T Consensus 144 K~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vL 223 (286)
T d1wp9a2 144 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVL 223 (286)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCCCEE
T ss_conf 89999999999997189984899967188679999999976996488605664334201022889999999876998299
Q ss_pred EECC--CCCCCCCCEEEEEECCCCC--CCHHHCC--------CEEEEEECCCCHH
Q ss_conf 8328--6678998199998168778--2113117--------5799997598989
Q gi|254780391|r 77 LTIS--SLNANTSTIRFLVDEASMH--IGDVDYY--------EKVVFIINTDDQG 119 (141)
Q Consensus 77 i~~~--~~~~~~~~~~~linl~~~~--p~~~~~f--------~rvieiv~~~d~~ 119 (141)
++++ .+..+-.++..+|+.++.+ ..+.++. .+++-++.....+
T Consensus 224 v~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~~~~~~~l~~~~~~e 278 (286)
T d1wp9a2 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRD 278 (286)
T ss_dssp EECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred EECCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHH
T ss_conf 9714402036688899899958998989999999857879998899998389889
No 18
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.28 E-value=19 Score=14.63 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 99999999977984999829989999999985
Q gi|254780391|r 17 LLVLLQDEYEKGKRVSVQCGSERVRDSLNEYL 48 (141)
Q Consensus 17 ~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~L 48 (141)
...|+.+.+..|.+++|+|++...++.+-..|
T Consensus 29 ~~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L 60 (201)
T d2p6ra4 29 FEELVEECVAENGGVLVFESTRRGAEKTAVKL 60 (201)
T ss_dssp HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99999999976996899968999999999999
No 19
>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}
Probab=24.62 E-value=20 Score=14.44 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 999999999999779849998299
Q gi|254780391|r 14 EYNLLVLLQDEYEKGKRVSVQCGS 37 (141)
Q Consensus 14 ~~~~~~L~~K~~~~~~ri~I~~~d 37 (141)
...++.+++++.+.|.+|+|+|..
T Consensus 67 ~~~~~~~i~~~~~~~~~VlVHC~~ 90 (145)
T d1m3ga_ 67 FQEAIGFIDWVKNSGGRVLVHSQA 90 (145)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCSS
T ss_pred HHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999999888764057469998155
No 20
>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
Probab=24.17 E-value=20 Score=14.39 Aligned_cols=99 Identities=12% Similarity=0.214 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHC-C----CEEEEEECCHHHHHHHHHHHHCCC------CC-CCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 999999999977-9----849998299899999999852188------23-33133224777654442206998328667
Q gi|254780391|r 16 NLLVLLQDEYEK-G----KRVSVQCGSERVRDSLNEYLWTWK------KD-GFLPHGVDVGDEGDFSSFQPVLLTISSLN 83 (141)
Q Consensus 16 ~~~~L~~K~~~~-~----~ri~I~~~d~~~~~~lD~~LW~~~------~~-sFiPH~~~~~~~~~~~~~~PV~i~~~~~~ 83 (141)
-+-+...-++.. + -|.+|.+++.-....+++.+|..- .+ -++|++. ++.-++ . ..
T Consensus 52 ~a~~~~~a~~~~~~~~~~~K~vivVD~Didi~d~~~v~wa~~tR~dp~rDi~~~~~~~-~~~LDp-s----------~~- 118 (166)
T d2idba2 52 HAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTP-IDYLDF-A----------SP- 118 (166)
T ss_dssp HHHHHHHHHHHSSGGGSSCCEEEEEETTSCTTCHHHHHHHHHHSCCHHHHEEEEEEEE-CCTTCT-T----------SS-
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCC-CCCCCC-C----------CC-
T ss_conf 7999999999716633256799982898886558999999997369666738548996-876888-8----------98-
Q ss_pred CCCCCEEEEEECCCCCCCHH-HCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 89981999981687782113-1175799997598989999999999999
Q gi|254780391|r 84 ANTSTIRFLVDEASMHIGDV-DYYEKVVFIINTDDQGSLEWGRAHWRSL 131 (141)
Q Consensus 84 ~~~~~~~~linl~~~~p~~~-~~f~rvieiv~~~d~~~~~~aR~rwk~y 131 (141)
..+..--+.|+-....+... ..|.+. + ..+++.++..++||+.|
T Consensus 119 ~~~~g~Kl~IDAT~~~~~e~~~~~p~~---~-~~~~e~~~~v~~~W~el 163 (166)
T d2idba2 119 VSGLGSKMGLDATNKWPGETQREWGRP---I-KKDPDVVAHIDAIWDEL 163 (166)
T ss_dssp BTTEEEEEEEECCCCCBTTBSSCCCEE---C-CCCHHHHHHHHHHTTTS
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCC---C-CCCHHHHHHHHHHHHHC
T ss_conf 788576389983167886454658776---7-89999999999999982
No 21
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=22.43 E-value=22 Score=14.18 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=27.5
Q ss_pred HHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 99999997-7984999829989999999985218823
Q gi|254780391|r 19 VLLQDEYE-KGKRVSVQCGSERVRDSLNEYLWTWKKD 54 (141)
Q Consensus 19 ~L~~K~~~-~~~ri~I~~~d~~~~~~lD~~LW~~~~~ 54 (141)
-|+.+.++ ..+.++|+|+|...++.|-+-|-.|.++
T Consensus 4 ~~~a~~~~~~~~p~lvv~~~~~~A~~l~~~L~~~~~~ 40 (308)
T d2b2na1 4 TLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ 40 (308)
T ss_dssp HHHHHHHHHCSSCEEEEESSHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999963999899908999999999999853787
No 22
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=22.26 E-value=22 Score=14.16 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=66.1
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC-CC-CCCCCCCCCCCCCCC------CCCCCEEEEE
Q ss_conf 631674899999999999977984999829989999999985218-82-333133224777654------4422069983
Q gi|254780391|r 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLNEYLWTW-KK-DGFLPHGVDVGDEGD------FSSFQPVLLT 78 (141)
Q Consensus 7 Y~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD~~LW~~-~~-~sFiPH~~~~~~~~~------~~~~~PV~i~ 78 (141)
|....+.. .+..-+.+.+..|.+++++|++.+..+.+.+.|=.. +. .-=+-||-....+-+ ......|+++
T Consensus 11 ~v~~~~~~-~i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~ 89 (211)
T d2eyqa5 11 FVREYDSM-VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 89 (211)
T ss_dssp EEEECCHH-HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEE
T ss_pred EEECCCHH-HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99678889-99999999998699599997175212668888887477337999972268888999999998298626887
Q ss_pred CC----CCCCCCCCEEEEEECCCCC-CCHH-------HC--C-CEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 28----6678998199998168778-2113-------11--7-5799997598989999999999999988
Q gi|254780391|r 79 IS----SLNANTSTIRFLVDEASMH-IGDV-------DY--Y-EKVVFIINTDDQGSLEWGRAHWRSLKNS 134 (141)
Q Consensus 79 ~~----~~~~~~~~~~~linl~~~~-p~~~-------~~--f-~rvieiv~~~d~~~~~~aR~rwk~yk~~ 134 (141)
+. .-+.+++.+. +|+.++.. .+.+ .| - ..++-+. +.....-+.|++|.+..++.
T Consensus 90 TtvIEvGiDvpnA~~i-iI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~-~~~~~~~~~a~~RL~~l~~~ 158 (211)
T d2eyqa5 90 TTIIETGIDIPTANTI-IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT-PHPKAMTTDAQKRLEAIASL 158 (211)
T ss_dssp SSTTGGGSCCTTEEEE-EETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE-CCGGGSCHHHHHHHHHHTTC
T ss_pred EHHHHHCCCCCCCCEE-EEECCHHCCCCCCCCCCCEEEECCCCCEEEEEE-CCCCCCCCHHHHHHHHHHHC
T ss_conf 5534404689987699-871300033112223023355367665489985-68767773288998999853
No 23
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.75 E-value=15 Score=15.18 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=49.5
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---------HHHHCCCCC--CCCCCCCCCCCCCC------C
Q ss_conf 631674899999999999977984999829989999999---------985218823--33133224777654------4
Q gi|254780391|r 7 YRFKNDWEYNLLVLLQDEYEKGKRVSVQCGSERVRDSLN---------EYLWTWKKD--GFLPHGVDVGDEGD------F 69 (141)
Q Consensus 7 Y~l~~~~~~~~~~L~~K~~~~~~ri~I~~~d~~~~~~lD---------~~LW~~~~~--sFiPH~~~~~~~~~------~ 69 (141)
|....+....+...+.+.+.+|.+++++||-.+..+.++ .++..+-++ --+-||-....+-+ .
T Consensus 8 ~vv~~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~ 87 (206)
T d1gm5a4 8 MLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFA 87 (206)
T ss_dssp CCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 99885429999999999997499889997514455321101367899999985089972889860365999999999997
Q ss_pred CCCCEEEEECC----CCCCCCCCEEEEEECCC
Q ss_conf 42206998328----66789981999981687
Q gi|254780391|r 70 SSFQPVLLTIS----SLNANTSTIRFLVDEAS 97 (141)
Q Consensus 70 ~~~~PV~i~~~----~~~~~~~~~~~linl~~ 97 (141)
.....|+++|. +-+.+++... .|+.++
T Consensus 88 ~g~~~iLVaTtViE~GIDip~a~~i-ii~~a~ 118 (206)
T d1gm5a4 88 EGRYDILVSTTVIEVGIDVPRANVM-VIENPE 118 (206)
T ss_dssp TTSSSBCCCSSCCCSCSCCTTCCEE-EBCSCS
T ss_pred CCCEEEEEEEHHHHCCCCCCCCCEE-EEECCC
T ss_conf 7987899970243104552678489-998048
Done!